TCONS_00001264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001264
Unique NameTCONS_00001264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001264 ID=TCONS_00001264|Name=TCONS_00001264|organism=Clytia hemisphaerica|type=transcript|length=4315bp
CAAAGACGGAAGTGTAAGATGCCTTCTAACAGAAACAGTAGTATACAAAT
CGAAGAAAGATCGAGTCGATGATGGAGGTAGAGCTGGTAGAGGAGATAGG
TTTttatatcttaatttttttgcaaatattcTTCCTTTACTTTTACCCAA
TGATGATATGGCTACACCCATGGTGTAGAAAACGACGTGGCAAATGGTAC
CATTGGAGATTGTACTATTTTCTCTatgcatttggttggttgatattcgc
TTTACCATCGCACAACTTCAGCAAGACATATTATATGGTAGTTGGCTCGG
TCATTCATATAACCATTGTACCGTTCATTTTGGGTTGTCGTCGGTACAGA
AAGCGAAAAGAAGATTTGAATgcgaaaatgaaagaactagctGCTTTGAA
ACCACAAGTCATTACAATTTGTAAAGTCACTGAGCCTCGTTCTTCGTGCT
GCGCAAAACAACAAATCATTTGGAGAGAACAGAAAGAATTCGAGTACCGA
CATTGGATAGATCTAACTGACCAATATTCAGTCGAATTGGAACCACNGCT
GCGCAAAACAACAAATCATTTTGAGAGAACAGAAAGAATTCGAGTACCGA
CATTGGATAGATCTAACTGACCAATATTCAGTCGAACTGGAACCACAGAT
GAAAAACATGGTCGAAGgtgaattgaaaattgaaatagaaTTCGATGACG
GTGAAACGAGGGAATCTTATATTCAACATGTCCAAAATCTTCGAAATGAA
TTGCCACAATATTGCCAAAATGCTCACATTTCTACTAAACGTGTTTTCAA
AGTCGATGAAAGGGATATCGAATCTATCGAAAGATCGTTTTATGGAAGCC
ACATGCAACCATTATTCCTTTTAAAACTCGTTCATCCACAGATAGAATTT
TCTTTCAGAGTGGTGAATTGGTTTCTTCAAAAGTTTGGGTCGAAGAAATT
ATTGACTAAAGAAATTATCATCAAGAAGGTTATTTCTGACAGAACTATTG
AAGCTCTTTGAACATGATGATGTATTTACCGAAAGAAGGAAATCAAAAGT
TGATGATGGAATCCCATTCCATCAACTATTTTGAAGGATAAAGGAAACTG
CAACCTTAGCAACGCTCTATTGATCCTTTTTGTTACTCGTTTTTagatca
tttttttttattatctatTTTGAGCACTAGAAAAAATGATTTAAGCCCTC
TTGCATCCATATTAATGACTTATTTTCATAGACTTTCATAGACAAGCCAA
ATTGGTTTTTTTATCTAACTCGTCTGCGTTAGCTATCAAGAAATAAGAAA
TGCATCGATCCATCTTTTGTCTTTAaagaacatattttttttaatgaatg
aGCATGCGTGAAATGTATTTTGACATGCGGTTGCCATGGAAAGAATATAT
CGGGGATGTCACAAACAAGCATGGAAGCTGTCAGAAAACACGCcaggaga
aaaatgaagatagggaagatgaaaacgaaaaaaaagagaaaacatttttg
gtttgaaaatggaagaAAGAAGGTCTGAAAAATATGCACTGATATGTgcG
ATACTTCTAACTATAGTTGGTGGTTCATGGTCCTTGGCCAACAACACAAT
AAACTCACAACAAAACACTACAGTTACTGAGACAGTATGTTGGAACATCA
CTTGCAACAGCAGTGAGAAGTGTTCAACAACGATTACTCTCAACACTACA
ACATCCACCCTTCTTCAACTGGACAACCAAACATGCTTTCGAGCAGATTG
TATGGATTTGAAGTGCGCTCAACAATACCTCAAACAAACAGTGTCGCTAC
CGATGAAGGAAAGTTGTGTCGAAATGTCATGTCTCAACACGTCTTGTATC
GAAGATACCATCTCAAACACCAGTTGTTTTCCAAAACAAACATCGACCTC
TGCACCAACGACTACAACNGACATCAGTTGTTTTCCAAAACCAACCTCAA
CCTCTGCACCAACGACTacaaccacaacaacaaaaTCCATGCAACAACTA
CGCCAAGAAGAGTGCGACCAATACAAATACTGGCTATTCAAAAACAAATG
TTCGTCGCGCTTCAGTTTGTGTGCAAAGGACGTCTTTCTCAATATGAGTC
AACATATTGAATGCTTAGAAGAGAAGGGAACTCAACATTACAAATACCCT
GCTGCGCCAATGTTGTTAATCTACCATTTGATCAAATATACCAAAGTCTT
TATGAAGGATGAAGTGCTGAAAATGATCAAGAAAACGCCTTTCCCGATTG
AGGTCTTCAAAAAGTTAGTTTGGTATGGCGAAGAATCGTTCCGCATGTCT
GATATTGTATTACCCGGTTATCATAAGAACCCGTTCAAACGATCGCGGCG
ACGTTGGAACGGGATTAACGATACGCTAACCGTGCCTTACGGGAACATCC
TACGTGGCGATTTCATCTATAACTTTGCCATGTTTGATCAAGTGGTCGTg
gcaaaacaagaaaaagagaaatatcGATTGAAAGACAACTGGCCTGACCA
GCATCCAATCTCAAATGGAGAATACATCAGTTTCAGAAGCGAAACCGGAT
GGAAGCACTATACTAATCACGTGATCAACTCAATAGTGGTCACTTTCGAT
ATCGAGCCAGCGATGGCTGAGCTTCCCACGTACAACACCATCGCGTTTAC
ACACAAGGATCGGAAAATGGTCAATCCAATCTGCGTATATTGGCAACCGT
TGAATGCTGGCAAAGAAGGAGCGGACCCAGAAGCAGGATATTGGACCAAT
TACCATATGAAGATattgaaaaccaacaaatcgATGACCGTTTGCAAAGC
GTATACTTTTGGTTCGTTCGCTGTACTGATGGAACCATACGTACCAAAAA
ATAACAGCCAACCTCTGGATGTCACCGAGATTCTCTTCCTAGCGTTTATC
TCGTTCTCCGCCCTCCTTCAACTGGTGTATTTGGCGGGGATGTTCTCCTT
GAAGTGCCATAAGAATAGCGCTAACAGATTGTATATTTACGCAAACCTCA
GTCTGTTCATGATGCAAGTATTGATCGTTTTCTCCTTCCGCCATCGTGAC
GATTGGGAAAAGTGTGCTATATATACAGGTTGGATACAGTTCTTTTTCAT
CAACATATTGAGTTGGCTAATGATGGAGAGTGTACATCGCTTGTCGAATC
TCCTTCATTTCTTCCACAAAGACACCAACAGAGATTTCTTATATCACATC
GTCGGCCTGGGTATCCCCCTTTCCAATATGATTGCAATGCAAGGTTTCCC
GTATGACGAGTACAGCTCACTCCGCATCTGTTGGGTGTACGCCAACGACT
TACGGCTTTGGTATTTCATCAACCCTATCACAGCCATCATTTGTGCCAGC
TTCTTAATCAAGTTCATCACCTTCAAGAAATATCAAGGCCAGGATAAGTT
TCTAGAGAATGATTTCAACTACCAGCAAGCGCAGTTGAGTGTGTTTGCCA
CCGGAGCCATCTTACCCACCCTCCTGATCGGCTGGACCTTGATGAGCGTG
TCAGTGCGCACTGAAGCAAAATTGCAGAATTTTCTTCTCATCGCAGCATC
TATCGCTCAAGTATGTCTTGGATTGCAAGTGCTTTACTTTTATTTCTACC
GCAACCATTGGGTGGTGGAAGCGATGACCGAGGAGAAACGTATCAAGGAG
AAAAAGAAGTTGACCACCTTATCTTTCTTGAAAGGACTTCCCATTCGTAT
ACGTTACAAGGACAATCCTTATGACGCAATGGAGGAGAAAAGTGAGGACT
CGTACGAAATGAGATACACTTCATCTTCATCTCTTGGCGATGAAATCATG
TTAGACGAAAGTGTTTATTGACTCCTTCATCTCATTCATTTAACCTTTTA
ATGTAATTTTGTTAGACAGAGACGAGTAATAGCAGTCTAAAGCAGACCTT
CTGTATGAAACACTGTTGAGAAACACTGATGAACTTGCACTGAGTAAAGA
ACTGCATCTTATATACCGTTTTTAACACTTTGCGTAAGATACATATTAGA
AAGTGCATGTTTATGGGTGCGGAGAAAGCAAATTACTACGAAAATTGAAA
TCGAACGAGAAAAAACGTTGCGAGTTGAatgaattatttcaaaatataat
ataaatcaTATAAATCTTTTAGTGGGTTTTTCTTCCATGTTATAATTTGT
TTATTATTCAGTAGTGAGTAGCTAACTTTTGATGTACATAGATGTCATGA
ATAAATCATTCCACTAATATATTCAAATGGTATGAATCAAAAGGCTAAGG
TTAGttcattctatttttatctGGGTTGAATCCGAACATTGAAAGGTTAC
CAGGTGACAATGAAA
Run BLAST on NCBI

protein sequence of TCONS_00001264-protein

>TCONS_00001264-protein ID=TCONS_00001264-protein|Name=TCONS_00001264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp
MEERRSEKYALICAILLTIVGGSWSLANNTINSQQNTTVTETVCWNITCN
SSEKCSTTITLNTTTSTLLQLDNQTCFRADCMDLKCAQQYLKQTVSLPMK
ESCVEMSCLNTSCIEDTISNTSCFPKQTSTSAPTTTXDISCFPKPTSTSA
PTTTTTTTKSMQQLRQEECDQYKYWLFKNKCSSRFSLCAKDVFLNMSQHI
ECLEEKGTQHYKYPAAPMLLIYHLIKYTKVFMKDEVLKMIKKTPFPIEVF
KKLVWYGEESFRMSDIVLPGYHKNPFKRSRRRWNGINDTLTVPYGNILRG
DFIYNFAMFDQVVVAKQEKEKYRLKDNWPDQHPISNGEYISFRSETGWKH
YTNHVINSIVVTFDIEPAMAELPTYNTIAFTHKDRKMVNPICVYWQPLNA
GKEGADPEAGYWTNYHMKILKTNKSMTVCKAYTFGSFAVLMEPYVPKNNS
QPLDVTEILFLAFISFSALLQLVYLAGMFSLKCHKNSANRLYIYANLSLF
MMQVLIVFSFRHRDDWEKCAIYTGWIQFFFINILSWLMMESVHRLSNLLH
FFHKDTNRDFLYHIVGLGIPLSNMIAMQGFPYDEYSSLRICWVYANDLRL
WYFINPITAIICASFLIKFITFKKYQGQDKFLENDFNYQQAQLSVFATGA
ILPTLLIGWTLMSVSVRTEAKLQNFLLIAASIAQVCLGLQVLYFYFYRNH
WVVEAMTEEKRIKEKKKLTTLSFLKGLPIRIRYKDNPYDAMEEKSEDSYE
MRYTSSSSLGDEIMLDESVY
Run BLAST on NCBI

transcript from alignment at sc0000007:1402001..1407047-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001264 ID=TCONS_00001264|Name=TCONS_00001264|organism=Clytia hemisphaerica|type=transcript|length=5047bp|location=Sequence derived from alignment at sc0000007:1402001..1407047- (Clytia hemisphaerica)
CAAAGACGGAAGTGTAAGATGCCTTCTAACAGAAACAGTAGTATACAAAT
CGAAGAAAGATCGAGTCGATGATGGAGGTAGAGCTGGTAGAGGAGATAGG
TTTTTATATCTTAATTTTTTTGCAAATATTCTTCCTTTACTTTTACCCAA
TGATGATATGGCTACACCCATGGTGTAGAAAACGACGTGGCAAATGGTAC
CATTGGAGATTGTACTATTTTCGTAAGTAGTATCAATTTCATGAAATACT
TTTTGCCAAGAATATTTATTGTGATTTTAATTTAAAGTTAACAAATCAAC
TGTCAAGCCGGTCTTTAAGAAAATATCAACAGGATCTTTAACGTAAAGGG
CAACAATGCAGACAGGTGCAACATCGGTAAGTAAACGTTGGAAAGTCGAT
CTCTCAAAATGACATCGGTTACTTAGGTTGCTCGTTCATTGACAGTCTTG
AAAAAGTCATCAATGTTTATCGGTAGGAATAATAATACACTATACACTAC
ATTATAGTACCGTAATACAAACCAAATCTTCTTTTAATATTTCAGTCTAT
GCATTTGGTTGGTTGATATTCGCTTTACCATCGCACAACTTCAGCAAGAC
ATATTATATGGTAGTTGGCTCGGTCATTCATATAACCATTGTACCGTTCA
TTTTGGGTTGTCGTCGGTACAGAAAGCGAAAAGAAGATTTGAATGCGAAA
ATGAAAGAACTAGCTGCTTTGAAACCACAAGTCATTACAATTTGTAAAGT
CACTGAGCCTCGTTCTTCGTGCTGCGCAAAACAACAAATCATTTGGAGAG
AACAGAAAGAATTCGAGTACCGACATTGGATAGATCTAACTGACCAATAT
TCAGTCGAATTGGAACCACNGCTGCGCAAAACAACAAATCATTTTGAGAG
AACAGAAAGAATTCGAGTACCGACATTGGATAGATCTAACTGACCAATAT
TCAGTCGAACTGGAACCACAGATGAAAAACATGGTCGAAGGTGAATTGAA
AATTGAAATAGAATTCGATGACGGTGAAACGAGGGAATCTTATATTCAAC
ATGTCCAAAATCTTCGAAATGAATTGCCACAATATTGCCAAAATGCTCAC
ATTTCTACTAAACGTGTTTTCAAAGTCGATGAAAGGGATATCGAATCTAT
CGAAAGATCGTTTTATGGAAGCCACATGCAACCATTATTCCTTTTAAAAC
TCGTTCATCCACAGATAGAATTTTCTTTCAGAGTGGTGAATTGGTTTCTT
CAAAAGTTTGGGTCGAAGAAATTATTGACTAAAGAAATTATCATCAAGAA
GGTTATTTCTGACAGAACTATTGAAGCTCTTTGAACATGATGTATTTACC
GAAAGAAGGTAACCAAAAGTTGATGATGGAATCCNTGAAGCTCTTTGAAC
ATGATGATGTATTTACCGAAAGAAGGAAATCAAAAGTTGATGATGGAATC
CCATTCCATCAACTATTTTGAAGGATAAAGGAAACTGCAACCTTAGCAAC
GCTCTATTGATCCTTTTTGTTACTCGTTTTTAGATCATTTTTTTTTATTA
TCTATTTTGAGCACTAGAAAAAATGATTTAAGCCCTCTTGCATCCATATT
AATGACTTATTTTCATAGACTTTCATAGACAAGCCAAATTGGTTTTTTTA
TCTAACTCGTCTGCGTTAGCTATCAAGAAATAAGAAATGCATCGATCCAT
CTTTTGTCTTTAAAGAACATATTTTTTTTAATGAATGAGCATGCGTGAAA
TGTATTTTGACATGCGGTTGCCATGGAAAGAATATATCGGGGATGTCACA
AACAAGCATGGAAGCTGTCAGAAAACACGCCAGGAGAAAAATGAAGATAG
GGAAGATGAAAACGAAAAAAAAGAGAAAACATTTTTGGTTTGAAAATGGA
AGAAAGAAGGTCTGAAAAATATGCACTGATATGTGTAAGTCTGTTTTTTG
TTATTGACGGTTACTAATATTTGCGGTGCGGTAATTTTAGACTTGAATTG
GATTCAATTTCAGTTGTTGTTTAAATTATCTAAGCTCAGCGGGAGCTCAC
TTGCGTAATTTAGAGCCCAATTCTGTAAAACTTCGAAATTTTAGTCTCAG
TTAATTGTTTGTATCTTCTAAAACAAAATCTCCGATTCAGATACGTTTCA
GATCAACTACTTTTTAAGTACAAAATTTGGATCTACTTAGTNGATACGTT
TCAGATCAACTACCTTTTAGGTACAAAATTTGGATCTACTTAGTTGCAAA
ATTCTAAGCATATTCATTTTTAATTTTAGGCGATACTTCTAACTATAGTT
GGTGGTTCATGGTCCTTGGCCAACAACACAATAAACTCACAACAAAACAC
TACAGTTACTGAGACAGTATGTTGGAACATCACTTGCAACAGCAGTGAGA
AGTGTTCAACAACGATTACTCTCAACACTACAACATCCACCCTTCTTCAA
CTGGACAACCAAACATGCTTTCGAGCAGATTGTATGGATTTGAAGTGCGC
TCAACAATACCTCAAACAAACAGTGTCGCTACCGATGAAGGAAAGTTGTG
TCGAAATGTCATGTCTCAACACGTCTTGTATCGAAGATACCATCTCAAAC
ACCAGTTGTTTTCCAAAACAAACATCGACCTCTGCACCAACGACTACAAC
NGACATCAGTTGTTTTCCAAAACCAACCTCAACCTCTGCACCAACGACTA
CAACCACAACAACAAAATCCATGCAACAACTACGCCAAGAAGAGTGCGAC
CAATACAAATACTGGCTATTCAAAAACAAATGTTCGTCGCGCTTCAGTTT
GTGTGCAAAGGACGTCTTTCTCAATATGAGTCAACATATTGAATGCTTAG
AAGAGAAGGGAACTCAACATTACAAATACCCTGCTGCGCCAATGTTGTTA
ATCTACCATTTGATCAAATATACCAAAGTCTTTATGAAGGATGAAGTGCT
GAAAATGATCAAGAAAACGCCTTTCCCGATTGAGGTCTTCAAAAAGTTAG
TTTGGTATGGCGAAGAATCGTTCCGCATGTCTGATATTGTATTACCCGGT
TATCATAAGAACCCGTTCAAACGATCGCGGCGACGTTGGAACGGGATTAA
CGATACGCTAACCGTGCCTTACGGGAACATCCTACGTGGCGATTTCATCT
ATAACTTTGCCATGTTTGATCAAGTGGTCGTGGCAAAACAAGAAAAAGAG
AAATATCGATTGAAAGACAACTGGCCTGACCAGCATCCAATCTCAAATGG
AGAATACATCAGTTTCAGAAGCGAAACCGGATGGAAGCACTATACTAATC
ACGTGATCAACTCAATAGTGGTCACTTTCGATATCGAGCCAGCGATGGCT
GAGCTTCCCACGTACAACACCATCGCGTTTACACACAAGGATCGGAAAAT
GGTCAATCCAATCTGCGTATATTGGCAACCGTTGAATGCTGGCAAAGAAG
GAGCGGACCCAGAAGCAGGATATTGGACCAATTACCATATGAAGATATTG
AAAACCAACAAATCGATGACCGTTTGCAAAGCGTATACTTTTGGTTCGTT
CGCTGTACTGATGGAACCATACGTACCAAAAAATAACAGCCAACCTCTGG
ATGTCACCGAGATTCTCTTCCTAGCGTTTATCTCGTTCTCCGCCCTCCTT
CAACTGGTGTATTTGGCGGGGATGTTCTCCTTGAAGTGCCATAAGAATAG
CGCTAACAGATTGTATATTTACGCAAACCTCAGTCTGTTCATGATGCAAG
TATTGATCGTTTTCTCCTTCCGCCATCGTGACGATTGGGAAAAGTGTGCT
ATATATACAGGTTGGATACAGTTCTTTTTCATCAACATATTGAGTTGGCT
AATGATGGAGAGTGTACATCGCTTGTCGAATCTCCTTCATTTCTTCCACA
AAGACACCAACAGAGATTTCTTATATCACATCGTCGGCCTGGGTATCCCC
CTTTCCAATATGATTGCAATGCAAGGTTTCCCGTATGACGAGTACAGCTC
ACTCCGCATCTGTTGGGTGTACGCCAACGACTTACGGCTTTGGTATTTCA
TCAACCCTATCACAGCCATCATTTGTGCCAGCTTCTTAATCAAGTTCATC
ACCTTCAAGAAATATCAAGGCCAGGATAAGTTTCTAGAGAATGATTTCAA
CTACCAGCAAGCGCAGTTGAGTGTGTTTGCCACCGGAGCCATCTTACCCA
CCCTCCTGATCGGCTGGACCTTGATGAGCGTGTCAGTGCGCACTGAAGCA
AAATTGCAGAATTTTCTTCTCATCGCAGCATCTATCGCTCAAGTATGTCT
TGGATTGCAAGTGCTTTACTTTTATTTCTACCGCAACCATTGGGTGGTGG
AAGCGATGACCGAGGAGAAACGTATCAAGGAGAAAAAGAAGTTGACCACC
TTATCTTTCTTGAAAGGACTTCCCATTCGTATACGTTACAAGGACAATCC
TTATGACGCAATGGAGGAGAAAAGTGAGGACTCGTACGAAATGAGATACA
CTTCATCTTCATCTCTTGGCGATGAAATCATGTTAGACGAAAGTGTTTAT
TGACTCCTTCATCTCATTCATTTAACCTTTTAATGTAATTTTGTTAGACA
GAGACGAGTAATAGCAGTCTAAAGCAGACCTTCTGTATGAAACACTGTTG
AGAAACACTGATGAACTTGCACTGAGTAAAGAACTGCATCTTATATACCG
TTTTTAACACTTTGCGTAAGATACATATTAGAAAGTGCATGTTTATGGGT
GCGGAGAAAGCAAATTACTACGAAAATTGAAATCGAACGAGAAAAAACGT
TGCGAGTTGAATGAATTATTTCAAAATATAATATAAATCATATAAATCTT
TTAGTGGGTTTTTCTTCCATGTTATAATTTGTTTATTATTCAGTAGTGAG
TAGCTAACTTTTGATGTACATAGATGTCATGAATAAATCATTCCACTAAT
ATATTCAAATGGTATGAATCAAAAGGCTAAGGTTAGTTCATTCTATTTTT
ATCTGGGTTGAATCCGAACATTGAAAGGTTACCAGGTGACAATGAAA

Coding sequence (CDS) from alignment at sc0000007:1402001..1407047-

>TCONS_00001264 ID=TCONS_00001264|Name=TCONS_00001264|organism=Clytia hemisphaerica|type=CDS|length=2313bp|location=Sequence derived from alignment at sc0000007:1402001..1407047- (Clytia hemisphaerica)
ATGGAAGAAAGAAGGTCTGAAAAATATGCACTGATATGTGCGATACTTCT
AACTATAGTTGGTGGTTCATGGTCCTTGGCCAACAACACAATAAACTCAC
AACAAAACACTACAGTTACTGAGACAGTATGTTGGAACATCACTTGCAAC
AGCAGTGAGAAGTGTTCAACAACGATTACTCTCAACACTACAACATCCAC
CCTTCTTCAACTGGACAACCAAACATGCTTTCGAGCAGATTGTATGGATT
TGAAGTGCGCTCAACAATACCTCAAACAAACAGTGTCGCTACCGATGAAG
GAAAGTTGTGTCGAAATGTCATGTCTCAACACGTCTTGTATCGAAGATAC
CATCTCAAACACCAGTTGTTTTCCAAAACAAACATCGACCTCTGCACCAA
CGACTACAACNGACATCAGTTGTTTTCCAAAACCAACCTCAACCTCTGCA
CCAACGACTACAACCACAACAACAAAATCCATGCAACAACTACGCCAAGA
AGAGTGCGACCAATACAAATACTGGCTATTCAAAAACAAATGTTCGTCGC
GCTTCAGTTTGTGTGCAAAGGACGTCTTTCTCAATATGAGTCAACATATT
GAATGCTTAGAAGAGAAGGGAACTCAACATTACAAATACCCTGCTGCGCC
AATGTTGTTAATCTACCATTTGATCAAATATACCAAAGTCTTTATGAAGG
ATGAAGTGCTGAAAATGATCAAGAAAACGCCTTTCCCGATTGAGGTCTTC
AAAAAGTTAGTTTGGTATGGCGAAGAATCGTTCCGCATGTCTGATATTGT
ATTACCCGGTTATCATAAGAACCCGTTCAAACGATCGCGGCGACGTTGGA
ACGGGATTAACGATACGCTAACCGTGCCTTACGGGAACATCCTACGTGGC
GATTTCATCTATAACTTTGCCATGTTTGATCAAGTGGTCGTGGCAAAACA
AGAAAAAGAGAAATATCGATTGAAAGACAACTGGCCTGACCAGCATCCAA
TCTCAAATGGAGAATACATCAGTTTCAGAAGCGAAACCGGATGGAAGCAC
TATACTAATCACGTGATCAACTCAATAGTGGTCACTTTCGATATCGAGCC
AGCGATGGCTGAGCTTCCCACGTACAACACCATCGCGTTTACACACAAGG
ATCGGAAAATGGTCAATCCAATCTGCGTATATTGGCAACCGTTGAATGCT
GGCAAAGAAGGAGCGGACCCAGAAGCAGGATATTGGACCAATTACCATAT
GAAGATATTGAAAACCAACAAATCGATGACCGTTTGCAAAGCGTATACTT
TTGGTTCGTTCGCTGTACTGATGGAACCATACGTACCAAAAAATAACAGC
CAACCTCTGGATGTCACCGAGATTCTCTTCCTAGCGTTTATCTCGTTCTC
CGCCCTCCTTCAACTGGTGTATTTGGCGGGGATGTTCTCCTTGAAGTGCC
ATAAGAATAGCGCTAACAGATTGTATATTTACGCAAACCTCAGTCTGTTC
ATGATGCAAGTATTGATCGTTTTCTCCTTCCGCCATCGTGACGATTGGGA
AAAGTGTGCTATATATACAGGTTGGATACAGTTCTTTTTCATCAACATAT
TGAGTTGGCTAATGATGGAGAGTGTACATCGCTTGTCGAATCTCCTTCAT
TTCTTCCACAAAGACACCAACAGAGATTTCTTATATCACATCGTCGGCCT
GGGTATCCCCCTTTCCAATATGATTGCAATGCAAGGTTTCCCGTATGACG
AGTACAGCTCACTCCGCATCTGTTGGGTGTACGCCAACGACTTACGGCTT
TGGTATTTCATCAACCCTATCACAGCCATCATTTGTGCCAGCTTCTTAAT
CAAGTTCATCACCTTCAAGAAATATCAAGGCCAGGATAAGTTTCTAGAGA
ATGATTTCAACTACCAGCAAGCGCAGTTGAGTGTGTTTGCCACCGGAGCC
ATCTTACCCACCCTCCTGATCGGCTGGACCTTGATGAGCGTGTCAGTGCG
CACTGAAGCAAAATTGCAGAATTTTCTTCTCATCGCAGCATCTATCGCTC
AAGTATGTCTTGGATTGCAAGTGCTTTACTTTTATTTCTACCGCAACCAT
TGGGTGGTGGAAGCGATGACCGAGGAGAAACGTATCAAGGAGAAAAAGAA
GTTGACCACCTTATCTTTCTTGAAAGGACTTCCCATTCGTATACGTTACA
AGGACAATCCTTATGACGCAATGGAGGAGAAAAGTGAGGACTCGTACGAA
ATGAGATACACTTCATCTTCATCTCTTGGCGATGAAATCATGTTAGACGA
AAGTGTTTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000671XLOC_000671Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001264-proteinTCONS_00001264-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001264-exon-sc0000007-1575043694:1406826..1407047TCONS_00001264-exon-sc0000007-1575043694:1406826..1407047Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1575043694:1405712..1406502TCONS_00001264-exon-sc0000007-1575043694:1405712..1406502Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1575043694:1405114..1405647TCONS_00001264-exon-sc0000007-1575043694:1405114..1405647Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1575043694:1402001..1404768TCONS_00001264-exon-sc0000007-1575043694:1402001..1404768Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1510915933:1406826..1407047TCONS_00001264-exon-sc0000007-1510915933:1406826..1407047Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1510915933:1405712..1406502TCONS_00001264-exon-sc0000007-1510915933:1405712..1406502Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1510915933:1405114..1405647TCONS_00001264-exon-sc0000007-1510915933:1405114..1405647Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1510915933:1402001..1404768TCONS_00001264-exon-sc0000007-1510915933:1402001..1404768Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1491911889:1406826..1407047TCONS_00001264-exon-sc0000007-1491911889:1406826..1407047Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1491911889:1405712..1406502TCONS_00001264-exon-sc0000007-1491911889:1405712..1406502Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1491911889:1405114..1405647TCONS_00001264-exon-sc0000007-1491911889:1405114..1405647Clytia hemisphaericaexon
TCONS_00001264-exon-sc0000007-1491911889:1402001..1404768TCONS_00001264-exon-sc0000007-1491911889:1402001..1404768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1402001..1407047 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0642344	0.058293	0.0668869	0	0	0	0	0	0	0	0	0.232635	0.137246	0	0.00874201	0.346689	0.211467	0.689498	0.707286	0.690439	0.794506	2.4461	5.01505	5.11799	7.77459	0.585165	0.915206	0	0.0164368
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000203GPS
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
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BLAST of TCONS_00001264 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 106/460 (23.04%), Postives = 179/460 (38.91%), Query Frame = 3 
Query: 2562 TNH--VINSIVVTFDIEPAMAEL-----PTYNTIAFTHKDRKMVNPICVYWQPLNAGKEGADPEAGYWTNYHMKILKTNKSMTVCKAYTFGSFAVLMEPYVPKNNSQPLDVTEXXXXXXXXXXXXXQLVYLAGMFSLKC-----------HKNSANRLYIYANL--SLFMMQVLIVFSFRHRDDWEKCAIYTGWIQFFFINILSWLMMESVHRLSNLLHFFHKDTNRDFLYHIVGLGIPLSNMIAMQGFPYDEYSSLRICWVYANDLRLWYFINPITAIICASFLIKFITFKKYQGQDKFLENDFNYQQAQLSVFATGAILPTLLIGWT----LMSVSVRTEAKLQNFLLIAASIAQVCLGLQVLYFYFY----------------RNHWVVEAMTEEK--RIKEKKKLTTLSFLKGLPIRIRYKDNPYDAMEEKSEDSY-EMRYTSSSSLGDEIMLDES 3812
            TNH  ++NS V+T  I    +       P   T+    +  +  NP C +W              GYW+    ++L TNK+ T C      +FAVLM     K++    D+             L  + ++  + SL C               ++R  I+ NL  SLF+ ++L +      D    CA++   + FFF+   +W+ +E V     L+  F  + +R   +++VG G+P   +       Y  Y + ++CW+  +   +W FI P T II  + +   I   K       L+ +       +  +  GAI    L+G T    LM ++  T        +I A +  +   LQ ++ + +                R H      TE      K     T   +  G   RIR   N  D + ++SE S+      SS+SL  E +L+ +
Sbjct:  758 TNHSVIVNSPVITAAINKEFSNKVYLADPVVFTVKHIKQSEENFNPNCSFW------SYSKRTMTGYWSTQGCRLLTTNKTHTTCSCNHLTNFAVLMAHVEVKHSDAVHDL------------LLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISLFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYFYLVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTAILKPESGCLD-NIKSWVIGAIALLCLLGLTWAFGLMYINEST--------VIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYSTGSQSRIRRMWN--DTVRKQSESSFITGDINSSASLNREGLLNNA 1188
The following BLAST results are available for this feature:
BLAST of TCONS_00001264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRL31.891e-1823.04Adhesion G protein-coupled receptor L3 OS=Homo sap... [more]
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