TCONS_00001309 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001309
Unique Name	TCONS_00001309
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1980

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000010:24431..35448+
coding sequence from alignment at sc0000010:24431..35448+

transcript sequence

>TCONS_00001309 ID=TCONS_00001309|Name=TCONS_00001309|organism=Clytia hemisphaerica|type=transcript|length=1980bp
TTTTACAGATGAAAAAACAATTGTATCAATGATGCATGATggaaaattaa
gtaaaatttaaGAAGTATCATCAATAgtataaaaatggaaaaaccgAAAG
AAATGTTTCGCTTTCCTGAGTCTTTTGATGTAAGTGACGATAATTTGGAC
AAGGATGGTACAACACCCTCTCCGCTGGACAACCCATCGACGACGCCATC
TTTTTTTGTAAGGAATGATGAAGAAAAGGAGAAGACGGAAAGTGCAAATG
AGAAAGATCGTAAGACTGAACCTCCTCCTGTTAAACGAGGACGTTCATTG
CTGTCTTTCATATCGGATGAGTTGGAAAGAGATTATTTATTGGAACAAAA
CGAGAAAAAATTGAAGGAAAGACGGAAGAGAGTCTATACTTTCTTCAAGA
CACCGCAACATCTTGAAAAAtttttgttttttggtttCTTGCTTTGTTTC
GATGTCTTCCTCTTCATCTTCACTTTTCTTCCCATTCGCATCATCATTGG
ATTGTTGAGAGGATTACGTAATATATTCAAACGCAACGGAAGaaaaatat
tgaatcCTGTTCAAAAGGTGGACCTATTAAAAGgCATCATCCTGGTTGTC
GTTTCACTGTTTATGCAAAGCATTGATACGTCAGTTATTTATCACGTGGT
TCGTGTCCAGTCCGTCATTAAGTTATATGTGGTATACAACATGTTGGATa
tggcggataaGCTATTAGCCTCGTTCGGTCAAGACGTGTTGGATGCACTC
TTTTGGACAGCTACTGAACCACGTGACCGGAGAAGAGAACATATTGGAAT
CATACCTCACCTTTTGTTGTCTTTCGCCTATGTCTCTGCACATGTTTTGT
TAAACTTATCACAAGCAATCGTACTGAACGTGGCAATCAactccttcagt
aaagctttACTCACTATCATGATATCAAACCAGTTCATAGAAATCAAGTC
AAGTGTGTTTAAAAGATTCGAAAAGAATAACTTGTTCCAAATGTCATGTA
GTGATGCCAGAGAGAGGTTGCACTATTCGATCATTCTTCTTGTAGTAGCT
TTACGTAATTTTGCTGAATATGAATGGAATATTGAATACGCGTACTCTTC
TTTCTTCCCGTTCGCTGCGTTGGTGATTGGTTCTGAATTTCTCGTGGATT
GGTTCAAACATGCTTTCATTACCAAATTTAATAATATACAACCTGATATT
TATCTGACGTATCGAAAATTTTTAGCGAAGAACATCCTCTCAAGTCGAGA
TGATttgGTTTTCACAGGACATACAGACCAAGTCTCAAGAAGAATGGGAT
TCACTGCACTTCCCTTAGCCATTCTGTTGATCAAAGTAGTTGGACAGTGT
GTGTCATTAAATGGAATCAATGGATTGTGTTTCGCATTCTCTGGTTATCT
ATGtcTTTGCGCTTTGAAACTACTGGTCAGCATTACTGTATTCGGAAAAG
CGTCAGAGTACATCAAAGATGATGTCACCCCCGTTCTGGATGCCAACACG
GTTCGAAGCCCTAATGACCCAACAGAAAGTAATGACAAAATATTCAAACA
GAGTTGGTCGTTTGAACCTTTGAACAGTGTACAAGATATTTACGGAGGGT
TTAATAGTAATACGAAAATATTTACCGGTCGTTGACTGGCTGTTGTGGAT
ATGCAAATCGGGAGGATTTTTTTGTATCATAAACTGTTAACTTTTTTCAT
GTAGATAGTTTTCGATGTTGAAATATTCGATACTCTACTGGGTGTTGAAG
CAGAATCGTTAAGTTGGATGTCTTGAAATAATCTTGAAGTCTTGCCAAGT
TTCACTTATGACGATAATTTACACGAAAACACTTACACAATTTGTCCTTT
TCACGCTTTTAGACAGATTTAGTAACTCTTAtgttctttatattttctta
gaTCAAAGATTTGTAAATTATTTTAGGTAGGGTAATTTTTGAACTAAAAA
GAAAGCATCGAAACTGATAATTCATTTAAG

Run BLAST on NCBI

protein sequence of TCONS_00001309-protein

>TCONS_00001309-protein ID=TCONS_00001309-protein|Name=TCONS_00001309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MEKPKEMFRFPESFDVSDDNLDKDGTTPSPLDNPSTTPSFFVRNDEEKEK
TESANEKDRKTEPPPVKRGRSLLSFISDELERDYLLEQNEKKLKERRKRV
YTFFKTPQHLEKFLFFGFLLCFDVFLFIFTFLPIRIIIGLLRGLRNIFKR
NGRKILNPVQKVDLLKGIILVVVSLFMQSIDTSVIYHVVRVQSVIKLYVV
YNMLDMADKLLASFGQDVLDALFWTATEPRDRRREHIGIIPHLLLSFAYV
SAHVLLNLSQAIVLNVAINSFSKALLTIMISNQFIEIKSSVFKRFEKNNL
FQMSCSDARERLHYSIILLVVALRNFAEYEWNIEYAYSSFFPFAALVIGS
EFLVDWFKHAFITKFNNIQPDIYLTYRKFLAKNILSSRDDLVFTGHTDQV
SRRMGFTALPLAILLIKVVGQCVSLNGINGLCFAFSGYLCLCALKLLVSI
TVFGKASEYIKDDVTPVLDANTVRSPNDPTESNDKIFKQSWSFEPLNSVQ
DIYGGFNSNTKIFTGR

Run BLAST on NCBI

transcript from alignment at sc0000010:24431..35448+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001309 ID=TCONS_00001309|Name=TCONS_00001309|organism=Clytia hemisphaerica|type=transcript|length=11018bp|location=Sequence derived from alignment at sc0000010:24431..35448+ (Clytia hemisphaerica)
TTTTACAGATGAAAAAACAATTGTATCAATGATGCATGATggaaaattaa
gtaaaatttaaGAAGTATCATCAATAgtataaaaatggaaaaaccgAAAG
AAATGTTTCGCTTTCCTGAGTCTTTTGATGTAAGTGACGATAATTTGGAC
AAGGATGGTACAACACCCTCTCCGCTGGACAACCCATCGACGACGCCATC
TTTTTTTGTAAGGAATGATGAAGAAAAGGAGAAGACGGAAAGTGCAAATG
AGAAAGATCGTAAGACTGAACCTCCTCCTGTTAAACGAGGTAAAAATTCT
TTGGGGTTTTTGCTTGTTTACCAAGTCTTTCGATTGTAATACCAACCAAt
cctttaaaattaaaaaaagccaaaatatttCTACATAAGTCTCTAACGGC
TTCTTCTATACACCTAATCTtatctcaaaatatttatttggtTGATCATT
TTTTAGGACGTTCATTGCTGTCTTTCATATCGGATGAGTTGGAAAGAGAT
TATTTATTGGAACAAAACGAGAAAAAATTGAAGGAAAGACGGAAGAGAGT
CTATACTTTCTTCAAGACACCGCAACATCTTGAAAAAGTAAGAGAAATTG
GGCTACTATCGTTCTTATAAGGGTAGCTGTTTCTATGGAAAAATTAACCC
ATACATAGCTTTGTAAGTGAAAAGTATCCACTTTCAAAAACAGACCAGTA
ATTCCAATGCTTTCGAATCCCCTGAAATTCCTTATTCTTGATCTATGGCT
TACCATCAATAATTAAAGGTTtctgttttgattgaaaggtctgatgatgc
tgatgtagtaaaaaaaagtgagacaagattagaaaaaaggttctgaaaaa
atgaaaatacgttgaataaaaaaacattcttcaaacaaagggactttttt
actgatactctttcgaatgtttttatgtttataatagATAGAATGTTTTC
TATcttaatcaaaacattcgattgtaaatttgctcgaaatcaactttgct
attttttgtttacaattaaGCAATAAAATGTGAGGTCACATAtcgaaaca
actttcgatctttcacttgtttgtAGGATATCGTTGCGaaaaaagtagct
ttaatttatctaaagacactgcctaaaataagctccATTTATTCCCGTTG
AAAACCTTTTAACAGCCGAAATTAATCATTATATTTGACCTTCAGTTTTG
AATTTCGAAAGCTTTAAACTTGTTTGTTTTAGAGGTTTTTATAGAGTGGG
TATTCAACAACTTtaattgtgtttttctttttcagtttttgttttttggt
ttCTTGCTTTGTTTCGATGTCTTCCTCTTCATCTTCACTTTTCTTCCCAT
TCGCATCATCATTGGATTGTTGAGAGGATTACGTAATATATTCAAACGCA
ACGGAAGGTAAAAGCAACCATTTTCCCCAGTATTTTTCTTTCTGGATTTT
TCGACACTTAGGACCTGGCAACACCGCTTTTAAGCAAGTTCCTCatcaaa
aaccgggatttttcttTCCGTTTATTGGTGAGTtgcactttgacgatttt
ctaaagaaaaaaagcctttttagTGTTCTGCCGACCGCAAATTCGATGTT
TCCCTACTGCAAGAGCTTCGAGTTTAAACTGACgtcaaaaatcgaatgtt
tagagccccaATTTGGACGTTATTGCGTAGAAAAAAGGGTACATGTCATA
TACAtacatgaaataaaaaaatatatgcaCGTGTTTTCACGGGGTAATGG
CATTTGCTGCACTACCAAATCCCAACATTCGCTCTTGtcgtaatttttct
tcttttatatctAACTGAAAGCGAtatctttttttatcatttcagaaaaa
tattgaatcCTGTTCAAAAGGTGGACCTATTAAAAGGTTTGTTGATTCTT
TTCACTTGCATTTGTTTTTTTCGCGGTATTGAACGCTTTATTTATCATAA
CCTTTCCTGGCCATTGATATTgtcttttttggggaaaatatCTTAGTGCC
AGGTATATTGAATAACTTAGCTTTGTTACTCGAGGTATACTCACAACGAC
TATCCCTGTTATTGAAAATGAATCCCTTAAACGGTTTAGATTTCCCACAT
TTTTTCCACGTATCTAGCCATCCTCCTCAGttaaatacagtagagtctcc
ataaatCGAAGATGCACGAGGAactcaaatttgttcgagttagttaagga
aatttcgagttatggagactagTTTCGTTAACTGGGAGACCAACAATATT
GTTCGAGTTGAGGAGACATTCAAGTAATATAGGTTCCAGTAATGGAGATT
CCACTGTCCTTCTCATCTCTCAGcgaatatttcttttatttttcacttta
ggCATCATCCTGGTTGTCGTTTCACTGTTTATGCAAAGCATTGATACGTC
AGTTATTTATCACGTGGTTCGTGTCCAGTCCGTCATTAAGTTATATGTGG
TATACAACATGTTGGATGTAAGTCGTCGCTTTATaagtgattttttgaaa
tttaaaaaaaatttctttaaagttcATGGTATTTCCCGGTACAAATAAAC
AGATTTCGAAtagttctgttttttttttgtttttttttttgttttttttg
tgtgtgtGTCAAGAGATAGTTACTAATAAACAAACACTAATTGGTTAATG
TGTTCACGTGCTCAATTTTAGCCAAGCCGGATTAGGGTTTGGTCTAGTTT
TAAACTTATGTGCTAATTACACggaatcaaaatattgaaataattattcg
tattttacatattttttcacCAGACTTTTCAAGTAGTCTATCAAATATAT
ATGGCGATTTTATGATTTCTCCATGCAGCCCTGGCAATTCAGCTTTTTTT
GCCGCGGCAAAATGCTCTTTATCAAATTTGCCGAGGCAAAATAGCATTTT
GCCtcggcatttttttgtttattgaattttgacttgaaaaactCCTATAC
ACCCTATGTCATCCAAAGTACTAGACGTCTCCTACATGATCAgaaaacaa
agttaaaaaacTTAAACGATTTGGCACCTTTGaagtttctttgattttat
tacCATTTGTCAGAAAATTTACGGCGGCAAATTATGCCGATGCAAACAAG
GAATAATCAAATTTACGGCAGCTTTTACCGCGGCATTTGCCTCGTGCCGC
GGCCAATTGCCAGGACTGCCATGTTATATGAAAACAGATAAATATGACct
tctttttttgtcttttcaagatggcggataaGCTATTAGCCTCGTTCGGT
CAAGACGTGTTGGATGCACTCTTTTGGACAGCTACTGAACCACGTGACCG
GAGAAGAGAACATATTGGAATCATACCTCACCTTTTGTTGTCTTTCGCCT
ATGTCTGTATCCTTTTCATTTGCAACATTTTCACACCCTTTAAATGTGTC
GGTCAAAATTAAGTCGGTCAAGCTCCTGAGTCGATgcttgaaaatgtttt
gattgaaaCAGTGAACAATCTCTTTACCATAGATGTTTTGAGAATAATGA
TAATTTTTCAGAGATGACCCttgcttgttttgtttttaaccaAGCAAGTC
AAGATTTTCATTCAGTCCAACTATTCTTTGTTATTGGATTTGATTTCGGT
GTTTAACTTCCCCTTTAATTTTTATTCCCCTTAACCAGCCAACCTTTTTA
CCAAACAGCTGCACATGTTTTGTTAAACTTATCACAAGCAATCGTACTGA
ACGTGGCAATCAactccttcagtaaagctttACTCACTATCATGATATCA
AACCAGGTCGGATTCTCTGTGCTAAACTTTATTTTCATGTCTAGTATACT
TGTCGCAGTGTGGATCATGGATAATCATGTCTGATTAGGCTCTTTTGGAG
ACAATCTTCCAGAATCATTACTGTCAACATTGGGGTATAATTGGGGTTTT
ACTTCATCTTTAACttgataaaaaagtttaatACTCCTGATCTATTCTTT
CCCAAGAAAgcgtttgaaaaataaagataaatttggtatttttcttcGTC
ATTTCAGTTCATAGAAATCAAGTCAAGTGTGTTTAAAAGATTCGAAAAGA
ATAACTTGTTCCAAATGTCATGTAGTGGTAAGGGATCTTTCCTAATTTAA
TTTATAGGAGTGTATTTCTCAattctattgacctctatgaaacaatctta
catctttacaatttatagatcttatcattccattagtttgtcaattctag
tttgaatttccctacGCACGGTGCATTTACAACATTGGTTGCCAAACCGT
TCCAAGTATCAATGCTCCTATAGTAAAGTGAATTCGTTTGGTATCCTCTA
ATGCCGTCTTCAGCGAAATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAGATTGTGCTTACGTTGAGGTCGATTTCGAAGAA
CGAGTTTCTGACATAGGGAAGATTTATCATAGACATtaagatgtttatat
acttccACCATGTCCCGATTTTACGCCGGATCTTGAGCAGGGTAGGTTCA
TGACTTGTAAACGTTCTTCATATGAATGGTTTCTATAACCACCGACAAGT
CTTGTGGCCCTACCTTGGACACTTTCAATTGCATCAGAGTGTTTGATTAG
CCGTGGAGACCAAACTGCTTGCGCGTACTCAAGGTGAGGTttcacaaatg
caatgaaaagtgtGCGGAGCATCTCGGGAGAAAGGAAGTCGAAGCTTCTG
TTAATCAATCCAACGATCGAGTTAGCCTTCTTGATCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCAGCGATCTCG
TAAGGATGTGCATGTTGAATGTTCCAGAATTTCCCTAGTGTCAACACGTG
ACACTTGTCAGGATGGAATTTCAACAACCAGTCATCAGACCACTTTTCCA
TTGCCTCGATATCGTGCTGAAGTCTAATTGCATCTTCAGCGTTCTTTATT
TCTTCAACCAGCTTTGTGTCATCGGCAAAGAAGAACATTTTTGAGTTGGT
GACTTCAGCTAGATGCTGTAAATAACAAAAAGGAGTGGATCTAAGAAATT
TCCTTGTGGTACACCACTATGCACATGATATTTCTTAGATAACTTTCCAT
TGACCTTCACATATTGGTAACGATCGGACAAAAATGCTTTCATCCAACCA
AGTACCCTTCCTCTGATACCTTACGCTTCGAGTTTTCTTAGTAATCTGCG
ATGTGGAACGGTGTCAAAGGCCTTTGCGAAGTCGAAATAGATTACGTCAA
CAACCTTATCATTGGATATCGAGTCCGCACATTTGTCTAAGTAGTGTAGT
AGTTGGGTTACTGTCGATCGCTTTCCTGATTCTTTGAATAACCAACActa
aaataagttaaaattaaaattaactcAAGGAAGAATTCACGCATATGTGA
GCAACTTTCTCGCATGCACAGTGGCCCTATTTCGAATTGATATATACCTA
TTGAGACCCTTAAAGCGTTAGGAGACTGGGTTATAGTTTACCGAGTATGA
TAGACGTGAAATGTTTGTAATATGATAAACAACCAAGTCCGAATATGAGC
ATCTTTCTGATCTTTctataaaaattcaagaaagaaaCAAGATGTTATGT
AAACAGAATATTTTCTAAATGTTTGCGTCCGTAGGAAGACCAATGTAACA
ACTTTAGACATTTGACGCTTCTTCCTAGTAAATTCTAACCCGGTCGTTTC
ACGCTTTCATGATTGTTACCAGGTGTATTAGTGAGTAGTTAAGTATGTCC
ATTATCGATGCTGACGGAAACGGGAAGTTAATATTCTGCAAAATTTACCG
CTGTCACTTACATTAGTAAGTAGACGTGTCGGTTCATTGGAATTGGAATA
ATTAAAATTCTTTCTGTTTTTGTAGATGCCAGAGAGAGGTTGCACTATTC
GATCATTCTTCTTGTAGTAGCTTTACGTAATTTTGCTGAATATGAATGGA
ATATTGGTAGGTTTGATTATGGAATTTTACTTCACTTGCATTTCCTTTCG
TTTGATTTACTGAAATACAGTTGAATTTCTCTAATACTATCTTGATGtga
ccaaaaattttcttcgaaatggagaaagattcgaatcgCAAAGAGTAATT
CaaaccactttccagctgaAGGGACCAATatattagttcgaattacagaa
agattcgataaatagaagttcgaattaaagTGAGTTGGCTGTACATACGA
TATCTTAATAGTTATCGAATATTCTGGAATAttatataattcaaaatttg
ccttgtttttgggtcattttgaatgtccaggggtcaactgatgcttgtcc
gggggttgAGATttgttgtccggggggggggggggNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggtaaa
tttccaaaaaatgttatatcctccaagGGGATGTCTCCATATTCtaattt
tttctggaagggCCCATTGGAGTACACGCCAccttaaaaaataatacaaa
ctttttgttttgctttcttTAGAATACGCGTACTCTTCTTTCTTCCCGTT
CGCTGCGTTGGTGATTGGTTCTGAATTTCTCGTGGATTGGTTCAAACATG
CTTTCATTACCAAATTTAATAATATACAACCTGATGTAAGTTTTTTacga
tcttcttctttctttataGAAAAAGATAGTAGGTCTATCGATAGAATTGA
GTGATTGATGTTAGATGCCACTGACACTTGCGGTTGGTTTCAAGGCTTAG
TTAATTGCCTGctgaagaaatttcaaatagttAGTCTCGACTTTGAAAAA
GCATGATTTCCAAACAAGTTTGATAAAAACCCTTGTCACTGTTGGTATTT
TTATACTTTAGTaagattgggctattccagaaaaaaattgtaccttTTTG
GCACCCACtggatttcttttttcaatttttcaggaccccttGGGTTTTTT
TATCTCACTtcttggaccaccctggatttccCTGCACAATTTACTAACCA
CTAAGGGAtgcagactatttctggaataccttatcggccaaaacttagtc
ggccctaagtgactaaattttggcttggtgactaaaattagggccgacta
aaatttgggctgactaaaaatttgggccaatttaaaagtttataattaag
ctttccttaaccAACTTTTTTGAATATCACATCATTACGTCCGCTACAAT
TCATCATTTTGTCCGCTATTACTCATTATATATTAGTTGGCcattagtga
ctaaattttgacgaggtgactaaaattagggccgactaaaattaaggtcg
actaaaattaaggccgactaagttttggccgataaggtagccACTTTGAC
CAGTCGTCATTGAAGAGTTCGTCAAGTTGATCTTATCTAAGTCTTAAAAG
TTGACTTAAACTGAAAATCTTTCTCTTTCAGATTTATCTGACGTATCGAA
AATTTTTAGCGAAGAACATCCTCTCAAGTCGAGATGATttggtaaaaata
attttaattgtcGACTTGAAAATATATCTAATCTGATTGACTTAGGGAGA
AGCCActactcgttatttttttcttttgcgtACAAAGATTTTACCCTATT
ATACTCATCGTAAGAATATTTAAGGAGTGGAGGCCAAGTAACGCCCATTA
TCCTTTGCTCAGCTATCGGTATCTAGACTATATTTACTTAGACGGAgaag
ttaattctttttattCTTGTTCAGGTTTTCACAGGACATACAGACCAAGT
CTCAAGAAGAATGGGATTCACTGCACTTCCCTTAGCCATTCTGGTGAGTC
TCTTACGCTAAGTATctgacaatagaccttttcataaattacgtcacgga
catcacttgcctcgttttgaaattattaccatggtgattaactgCAAGTG
GATTTTAGTTAAACTACTTccaattcataaaaaaatcatttaatgtctca
agggacataattaccatggtaattgtttgaatacgaggcgagtgatgttc
gtgacgtaatttatgaaaaggtctatttgatctgtttataaaaaaactaa
attatTTCTACTTTCCACACAATATTACTTTAGATTTTAATTCTTAATTC
CTTCCTCGGGACACTCGTATGTTTTGTGGTATGTTAGCTTTGTCACAAAA
ACATCCTCCAAAAATAACTTAAAGCCATGTAAAGAATTTTGTTAAAACGG
CTTAAATTCTGATAACGGTTTAAGCggttcaaaaaaaatgtttaatgctg
ttggttttgaatgttttagaTCCTGATCAGTTTAGCATGTTTGTTTCACG
AAAGAAATTGTCATATGACGCTTCTCACAAATTTCTGACATGCTTATGTT
GTCACGCGTGTTTTTTGCTGTTGTATTACTCATATATAGTATTGAGAGTT
GATTCAAGGTTAAAATTTGATAGTCCTTTGTGTGCGAACAGCAAATGTCC
GAAAACCACGACCACAACCAGGGCCTCAATTCCATTCCAATTCATTGCTA
TTCACCCGCAGTAAAATTCTCCGAGCAGATTCCGATACTTCGCGCATGGC
ACGCATTTACTCTAAGGGCCAGGTTGGCGCACCGCTTTGATCTTTTTTAT
CCAGATTTGAGAtcaatattaaatgagcttgcTAGCTCGGTGATtggtca
aaacaaaacaatcgtACCAAAATCAAACCCCAGTTAAAACATAAACATTG
AACCCAGTCATTTTCgatttcgctttcgttttcaagcaaagagcTACGCG
GTTTTGAATGGGTTGCCTAAACAACCAGGTCCTATCATTTAGAGCAGAGC
GTAGTACGTGCAGAAGGAACGNGTTGCCTAAACAACCAGGTCCTATAATT
TAGAGCAGAGCGTAGTACGTGCAGAAGGAacgatctgttatgagattaaa
TTCCGACATAATATTTTGTCAGTCTCTTATTGGTAGGTCTTCTTCTGTGA
TGTGAATTACCCTCATTTTTTTCTTGAGCCATTCTCCAAAAATTGCGACA
TTCATATAATCATATCATCACCATAAACACTTTTTTACGTGTGATCGTGT
TACATTAAAAAGGCTCAGATCCTGTTTTGCCAATTGCTAGGTGAATCTTA
AAGGCTAAAGGCGATTTAGATCTCTCAATTTAATgcaattttctgttttt
gtgaTGTAACAAAGCCAAATCTCCTTTCAGTTCGCTGCTAAAAAAGCCAC
CAAAGTGGACGTTTTTAAAAGCTGAtgtatttttggatttttcgaAGCTC
CTGAGGGTTAGTGCTAAACTTTTTTGTCTCTCTTTTTTTACAGTTGATCA
AAGTAGTTGGACAGTGTGTGTCATTAAATGGAATCAATGGATTGTGTTTC
GCATTCTCTGGTTATCTATGGTAAGCACTTGTTAATCTTCAAATGAAAac
taattcatttttcattttcagaaagTGCAATTTGACGACTACTGAatcaa
attttggatttttttttaaatcataccCCGAATTTAAGATTAACTATATG
GGCAAATATTATgacattttacttttttctcaGCACCCagtaatgggcca
ttccattttatatctatACAGTTTCTCAAATTTTTCCAGGGAGTGAAAAA
TTATTCCAAATCTTCCTGAGGCTAAAAGACTAGTTTTAGTTCGTTCACCC
TCACTTTTAATGTATGAAGAagattttttcaaggttttttgcaAGTTCTG
CCATTTCCCAGGAGGTATGGACGCTTTTTCATGAACCTTTTCTTGAACAG
CCCAATGCTTACGTGTTAAAAAGTCATGCACATTTGGGGTTACAAATCTG
TGTTCAGATTTTCTCATATTTCTCTTAGATAAAGATTGCATCCCTGTGAA
GTAAACCGATTTTGGCTATTTTGAGTCTTTTTGACTCTTTTTGACTATAT
TTGTCCTGCTTCACAGAGCTGTAACGTTTCATTTAAGAAAGATAAGAAAA
GTCTGAACACAGATTTGAAGTCTTAACGAGATTTAAATAAACATTTAAGA
CTTTGGTATTCCTTTTTAATTTAACGATTTAGCAAAAGGTTCAAATCTTC
AAAACTCTTGACAATAAAAAgtctttccttttttctttcagtcTTTGCGC
TTTGAAACTACTGGTCAGCATTACTGTATTCGGAAAAGCGTCAGAGTACA
TCAAAGATGATGTCACCCCCGTTCTGGATGCCAACACGGTTCGAAGCCCT
AATGACCCAACAGAAAGTAATGACAAAATATTCAAACAGAGTTGGTCGTT
TGAACCTTTGAACAGTGTACAAGATATTTACGGAGGGTTTAATAGTAATA
CGAAAATATTTACCGGTCGTTGACTGGCTGTTGTGGATATGCAAATCGGG
AGGATTTTTTTGTATCATAAACTGTTAACTTTTTTCATGTAGATAGTTTT
CGATGTTGAAATATTCGATACTCTACTGGGTGTTGAAGCAGAATCGTTAA
GTTGGATGTCTTGAAATAATCTTGAAGTCTTGCCAAGTTTCACTTATGAC
GATAATTTACACGAAAACACTTACACAATTTGTCCTTTTCACGCTTTTAG
ACAGATTTAGTAACTCTTAtgttctttatattttcttagaTCAAAGATTT
GTAAATTATTTTAGGTAGGGTAATTTTTGAACTAAAAAGAAAGCATCGAA
ACTGATAATTCATTTAAG

Coding sequence (CDS) from alignment at sc0000010:24431..35448+

>TCONS_00001309 ID=TCONS_00001309|Name=TCONS_00001309|organism=Clytia hemisphaerica|type=CDS|length=1551bp|location=Sequence derived from alignment at sc0000010:24431..35448+ (Clytia hemisphaerica)
atggaaaaaccgAAAGAAATGTTTCGCTTTCCTGAGTCTTTTGATGTAAG
TGACGATAATTTGGACAAGGATGGTACAACACCCTCTCCGCTGGACAACC
CATCGACGACGCCATCTTTTTTTGTAAGGAATGATGAAGAAAAGGAGAAG
ACGGAAAGTGCAAATGAGAAAGATCGTAAGACTGAACCTCCTCCTGTTAA
ACGAGGACGTTCATTGCTGTCTTTCATATCGGATGAGTTGGAAAGAGATT
ATTTATTGGAACAAAACGAGAAAAAATTGAAGGAAAGACGGAAGAGAGTC
TATACTTTCTTCAAGACACCGCAACATCTTGAAAAAtttttgttttttgg
tttCTTGCTTTGTTTCGATGTCTTCCTCTTCATCTTCACTTTTCTTCCCA
TTCGCATCATCATTGGATTGTTGAGAGGATTACGTAATATATTCAAACGC
AACGGAAGaaaaatattgaatcCTGTTCAAAAGGTGGACCTATTAAAAGg
CATCATCCTGGTTGTCGTTTCACTGTTTATGCAAAGCATTGATACGTCAG
TTATTTATCACGTGGTTCGTGTCCAGTCCGTCATTAAGTTATATGTGGTA
TACAACATGTTGGATatggcggataaGCTATTAGCCTCGTTCGGTCAAGA
CGTGTTGGATGCACTCTTTTGGACAGCTACTGAACCACGTGACCGGAGAA
GAGAACATATTGGAATCATACCTCACCTTTTGTTGTCTTTCGCCTATGTC
TCTGCACATGTTTTGTTAAACTTATCACAAGCAATCGTACTGAACGTGGC
AATCAactccttcagtaaagctttACTCACTATCATGATATCAAACCAGT
TCATAGAAATCAAGTCAAGTGTGTTTAAAAGATTCGAAAAGAATAACTTG
TTCCAAATGTCATGTAGTGATGCCAGAGAGAGGTTGCACTATTCGATCAT
TCTTCTTGTAGTAGCTTTACGTAATTTTGCTGAATATGAATGGAATATTG
AATACGCGTACTCTTCTTTCTTCCCGTTCGCTGCGTTGGTGATTGGTTCT
GAATTTCTCGTGGATTGGTTCAAACATGCTTTCATTACCAAATTTAATAA
TATACAACCTGATATTTATCTGACGTATCGAAAATTTTTAGCGAAGAACA
TCCTCTCAAGTCGAGATGATttgGTTTTCACAGGACATACAGACCAAGTC
TCAAGAAGAATGGGATTCACTGCACTTCCCTTAGCCATTCTGTTGATCAA
AGTAGTTGGACAGTGTGTGTCATTAAATGGAATCAATGGATTGTGTTTCG
CATTCTCTGGTTATCTATGtcTTTGCGCTTTGAAACTACTGGTCAGCATT
ACTGTATTCGGAAAAGCGTCAGAGTACATCAAAGATGATGTCACCCCCGT
TCTGGATGCCAACACGGTTCGAAGCCCTAATGACCCAACAGAAAGTAATG
ACAAAATATTCAAACAGAGTTGGTCGTTTGAACCTTTGAACAGTGTACAA
GATATTTACGGAGGGTTTAATAGTAATACGAAAATATTTACCGGTCGTTG
A

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000713	XLOC_000713	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001309-protein	TCONS_00001309-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000010	supercontig	sc0000010:24431..35448 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.9618	37.9564	15.7866	10.8735	10.2927	8.19751	13.1866	11.7182	13.9269	14.407	15.8712	13.7018	10.0589	11.5117	9.90778	10.9866	10.181	12.3157	4.47197	5.7715	10.1685	11.4785	30.4109	25.518	15.2062	12.8418	5.82336	5.92169	14.2302	16.3785

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008010	Tatp1

Blast

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BLAST of TCONS_00001309 vs. Swiss-Prot (Human)
Match: TAPT1 (Transmembrane anterior posterior transformation protein 1 homolog OS=Homo sapiens GN=TAPT1 PE=1 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 9.053e-131
Identity = 199/393 (50.64%), Postives = 271/393 (68.96%), Query Frame = 1

Query:  295 SLLSFISDELERDYLLEQNEKKLKERRKRVYTFFKTPQHLEKFLFFGFLLCFDVFLFIFTFLPXXXXXXX-XXXXXNIFKRNGRKILNPVQKVDLLKGIILVVVSLFMQSIDTSVIYHVVRVQSVIKLYVVYNMLDMADKLLASFGQDVLDALFWTATEPRDRRREHIGIIPHLLLSFAYVSAHVLLNLSQAIVLNVAINSFSKALLTIMISNQFIEIKSSVFKRFEKNNLFQMSCSDARERLHYSIILLVVALRNFAEYEWNIEYAYSSFFPFAALVIGSEFLVDWFKHAFITKFNNIQPDIYLTYRKFLAKNILSSRDDLVFTGHTDQVSRRMGFTALPLAILLIKVVGQCVSLNGINGLCFAFSGYLCLCALKLLVSITVFGKASEYIKD 1470
            SLL F+S EL R Y LE NE K  ERR+RVYT  + P+ LEK + FG  LC D FL++FT LP+R+ + L        +    R++L P Q  D+LKG+ILV+    M  +D S++YH++R QSVIKLY++YNML++AD+L +SFGQD+LDAL+WTATEP++R+R HIG+IPH  ++  YV  H +L + QA  LNVA NS +K+LLTIM+SN F+EIK SVFK+FEKNNLFQMS SD +ER    ++LL+V LRN  ++ WN ++ +   FP   +VI SE  VD  KHAFITKFN+I  D+Y  YR  LA +++SSR    +T ++D V+RRMGF  LPLA+LLI+VV   + + GI         Y  L +LK+L SI + GK+ +Y+K+
Sbjct:   69 SLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLW-VLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKE 460

The following BLAST results are available for this feature:

BLAST of TCONS_00001309 vs. Swiss-Prot (Human)

BLAST of TCONS_00001309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TAPT1	9.053e-131	50.64	Transmembrane anterior posterior transformation pr...	[more]

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TCONS_00001309 (transcript) - C. hemisphaerica