TCONS_00001336 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001336
Unique Name	TCONS_00001336
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2965

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000010:226374..238625+
coding sequence from alignment at sc0000010:226374..238625+

transcript sequence

>TCONS_00001336 ID=TCONS_00001336|Name=TCONS_00001336|organism=Clytia hemisphaerica|type=transcript|length=2965bp
TTTTCTATAAATATTCTTGAAAAGACAATAAGTATACAAAAAGGAAGACA
AATAAAGATGATCTAGGAAGATCAATATTTGAGTGGAAGATTTTTAATGT
ACAAAAATTCTAAGaagtgaatcaatcaatcaaacatGGATTTTGATCCG
TTGAGTGACAATGAAGATGATGTGACATTTATgccagagaaaaagaaaaa
agataaagaagAAAAACGACGAAAAAGTAAAGGCTCCCATAAATCTGACA
AGAGAGATAAGGGAAGCTTCAGTGATGGGTCAACACCAACAGCCATGAAA
AGTAAGAATGTCGTGCATGGTCTTGTGGGTCCTGCAGAATACATTGCTGA
AAACAGTCCTACACATGGAGAATCGTCGACAGCGTTTGGCAACCAACCTA
CTTCTCCAACTACAAATATCTCTGCAGCTCAAGTCTTTTCACAACAGCAA
GTGACACCGCAAAAGATTCAACAAACATCACAGGTCCTTCAACAACAAAC
TCCCCAACAGATGCAGCAGCAATGGACGCCACAAAAACATCAACAAGCAA
ACAATCAACAGTTTGCCCAACAGTCCAATTCAACGCCCAACTTCCAACAG
CTTCAATATCAAAACACACCGACAAGTGGACAACCTTTCACAGCTAATTT
CAATGCATCCTCGACGAAAATTGAGCGACCACATTCTTCGGCTGCACTAC
TCCAAGAGCGAACGCCTCAACAATCACCACAGCCTTTCAAACAATCAACG
ACTATGACCCAACAAAAAGGCACTCTGCTTGCTCAAGCAATGAATACAAC
CCCTCAGCCTCAGCCTTCACCACTACCAAATAAACAAGCTCCTGCAGCCA
GTATCCAACCACTTCCACCGAACCCGTCCCAACTGACCGCAGCCATTAAT
ATGACACATCACCGAAACTCATCTTATTCAAGAGCTATGTCATTACCGGT
GGAGTCAGCAACTGGGAAACAGGATGCAAGCTCGGATCACATGATCAATA
GATTCCATACAAAATTTGACAGTGAGCTTGAAGTCTCCACAAATGTTGTT
GGATCACCAATCCTTGAGAATCCAGCCTCACCATTCCAGAGATCAGACTC
ACTCTCTTCACCTCCACTAACACCCAATAACAAACACTCAGCTTCACAAC
AAGAATTGTGGAACAATGCACCGCCCTTACACCACGCCCATCATCATACC
CACCACTCTCATGAAGCACCACACACGCCCAAGCAACATGACGGTGATTG
GGCGCATTTTTCACCTCAAACAGAAGATGTACCTACATCGAGTCATCCCA
ATGCTGGTGTAATCTCGTCTTCNACGGTGATTGGGCGCATTTTTCACCTC
AAACAGAAGATGTACCTACATCGAGTCATCCCAATACTGGTGTAATCTCG
TCTTCGGTTGAGTCGGACAATCAATTGCCACCGCCATCGAATCATATCGA
TATACCAAGAAAGAGAAGCCAAACGGAGAGCATGGCGTCATCCAGCATGG
CATCCAGTATCCCAGAAAGCACGAGTAGTGTTGACAGTAGTTCCGACAAT
GAAGAAATGAGAATCACGCAAGAACAAAGAGAATATTACACCAACCAATT
CAAAAGTTTACAACCCAATGAAGACGATGTTATCAAAGGTCCCCAAGCTC
GTGATTTCTTCTTGAAGTCGAATCTAGCGATGGAAACTCTTTCTAAGATC
TGgCATCTATCAGACTTGGATAAAGATGGCGCATTGAACTTGGAGGAGTT
TCAGATTGCAATGCATCTGGTTGTGTTAATTAAACATGGTTACGAGTTAC
CGATGGTTTTACCTCCTTCCCTTCTTGGTCAAGAGCAAGTCCATCAAATG
GCAAGTCAAGATGGTGTGGATATGAGCGATGAAGATGAGAAATTGATTTC
TGATGACGAAAAACAAGAATCTGGTGATTGGTCCGCTGAATTTGATGCTA
CGGATGGGGCACCAATTGATCGTGGTGAACGTATAGTGCAAACTTACGCG
CAACCCTCCCCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACAACC
CGTCTCGCACATGATCGAACAACAACAGATCAACCATGACGACGAAAACG
AATTACCTTCCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCCGCG
GCGGGTGGCAAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAATAA
AAACGTTAATCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCACCGT
CCGGGAAAACTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCGAAG
AAAGCCTTGAAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGGTGT
CATCAGTGATAGCGAAAATAATAAACTGGTCTCGATTGATAATCACATGT
CCCAAACGACGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTCGAC
GACGACGAACATTTGACGGACGACCACGATCACGAACGTTTGAAAGTCAA
GAAAAAGGATTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGCGTT
CGATTGATAGCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAATGG
AAGAGACAATCCATTAGACGAGAATCGAGACCAAGGTCATTTACAGGGGA
AAGCACACACGACACACCGCAATTCGAATCACCGCCCGTCCCACCGCCAC
GAACGAATAAAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAAATG
TTCCATAATCGTTCACCTAGAGTCAGTTCTGAACCGAAATTACAAGTAAC
GACACCAACTGACGGAACAGGCAAGAATCCGCCACAAAAACCACCACGCT
CAAATCCACCAAGCACTTCTTCAACTAATAACTCGTCTGCCGCCCCCACT
GCTGCAGCCCGCCCTCGTTCGTCCAAGGGTGATGAATATCATAGGTCACG
ATCACTTGATGTAAG

Run BLAST on NCBI

protein sequence of TCONS_00001336-protein

>TCONS_00001336-protein ID=TCONS_00001336-protein|Name=TCONS_00001336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
MASSSMASSIPESTSSVDSSSDNEEMRITQEQREYYTNQFKSLQPNEDDV
IKGPQARDFFLKSNLAMETLSKIWHLSDLDKDGALNLEEFQIAMHLVVLI
KHGYELPMVLPPSLLGQEQVHQMASQDGVDMSDEDEKLISDDEKQESGDW
SAEFDATDGAPIDRGERIVQTYAQPSPTSVTVPSETRVQPVSHMIEQQQI
NHDDENELPSSPGALASPNDVAAAGGKMTAIARPRVTANKNVNLMDASPW
QLLPPPSGKTGKFGGPNGGTTAKKALKMDSVDSELDSAGVISDSENNKLV
SIDNHMSQTTSPTNGDSSLDNLDDDEHLTDDHDHERLKVKKKDSAYFRNL
SKEKSRSIDSLRSDISESSMFEWKRQSIRRESRPRSFTGESTHDTPQFES
PPVPPPRTNKGHARASSLDFNQMFHNRSPRVSSEPKLQVTTPTDGTGKNP
PQKPPRSNPPSTSSTNNSSAAPTAAARPRSSKGDEYHRSRSLDV

Run BLAST on NCBI

transcript from alignment at sc0000010:226374..238625+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001336 ID=TCONS_00001336|Name=TCONS_00001336|organism=Clytia hemisphaerica|type=transcript|length=12252bp|location=Sequence derived from alignment at sc0000010:226374..238625+ (Clytia hemisphaerica)
TTTTCTATAAATATTCTTGAAAAGACAATAAGTATACAAAAAGGAAGACA
AATAAAGATGATCTAGGAAGATCAATATTTGAGTGGAAGATTTTTAATGT
ACAAAAATTCTAAGaagtgaatcaatcaatcaaacatGGATTTTGATCCG
TTGAGTGACAATGAAGATGATGTGACATTTATgccagagaaaaagaaaaa
agataaagaagGTATCGTTCAAATTCTACTTCctgaacaataaaaaaact
attCAGCAGCAACCTTCTCTCTCTCAACTCCCTCTAGCTTGTGTTGTCTG
ACAACCAATTACGTGGGAAAAAATAGTTTATAGTAAATAACTTGTAGTTA
ATTAAAAATGCTTGTTTTTCTATTGTGTTTTATCTATTAGCAGCTTTTTA
ATCCATCTCTACTCATCAATATTTTATACTTTCCTTGTCCTTACAAACTC
AACACTGTTTTTAACTGGCTTGAATGGTTAACCATCTAGTTTGCTCATTT
ATTTCTTACAATATCGAAttaattaacatattttattaGCCTTCCAGATA
AGTGCGAttgatatctttttattgattgTGAGTTGCTATTATATTAGCGC
TGCATTTTGGTTTGTAGAAAAACGACGAAAAAGTAAAGGCTCCCATAAAT
CTGACAAGAGAGATAAGGGAAGCTTCAGTGATGGGTCAACACCAACAGCC
ATGAAAAGTAAGAATGTCGTGCATGGTCTTGTGGGTCCTGCAGAATACAT
TGCTGAAAACAGTCCTACACATGGAGAATCGTCGACAGCGTTTGGCAACC
AACCTACTTCTCCAACTACAAATATCTCTGCAGCTCAAGTCTTTTCACAA
CAGCAAGTGACACCGCAAAAGATTCAACAAACATCACAGGTCCTTCAACA
ACAAACTCCCCAACAGATGCAGCAGCAATGGACGCCACAAAAACATCAAC
AAGCAAACAATCAACAGTTTGCCCAACAGTCCAATTCAACGCCCAACTTC
CAACAGCTTCAATATCAAAACACACCGACAAGTGGACAACCTTTCACAGC
TAATTTCAATGCATCCTCGACGAAAATTGAGCGACCACATTCTTCGGCTG
CACTACTCCAAGAGCGAACGCCTCAACAATCACCACAGCCTTTCAAACAA
TCAACGACTATGACCCAACAAAAAGGCACTCTGCTTGCTCAAGCAATGAA
TACAACCCCTCAGCCTCAGGTATCATATAAAGTAATTAGTATGAAGCTCT
ATTCTACCAACGCAGTGTTCGTTCGCTaataaatttttagattttcttaa
CCTGTTAATAAGCGTGAAATGGTTGTATTAATTTTCTAAAAGATCTTAGT
AATCTTACAACAATAGAATCTGTGTGTGATACTGCTGGCTTTTCAATTTA
AATCATCAAATCtgtaaaatgtgttttttttattcttactATATATaaca
tttaaaacttttttctcaGCCTTCACCACTACCAAATAAACAAGCTCCTG
CAGCCAGTATCCAACCACTTCCACCGAACCCGTCCCAACTGACCGCAGCC
ATTAATATGACACATCACCGAAACTCATCTTATTCAAGAGCTATGTCATT
ACCGGTGGAGTCAGCAACTGGGAAACAGGATGCAAGCTCGGATCACATGA
TCAATAGATTCCATACAAAATTTGACAGTGAGCTTGAAGTCTCCACAAAT
GTTGTTGGATCACCAATCCTTGAGAATCCAGCCTCACCATTCCAGAGATC
AGGtataaatgtttttaattttcgagCAGCAAATTACAAACACTGCACTA
TTAAttctaaaggttttattttcttCCCATTTTTTAATGATAAGTGAAGG
TGTCAAAATATTATTTCGaatctttattttttccttAAGTAACTACTCAT
CCCCACTTTATTAGCACTCTTTATGTTGCAAATCGTAAATTTAATAATTG
CAATAATTAATTACTACACTTCCACTTGCAACTAATAAGAAGTAATTAGT
TATTTATTTTACCATTCTCACATTTTTTAGACTCACTCTCTTCACCTCCA
CTAACACCCAATAACAAACACTCAGCTTCACAACAAGGTACGGACATGCA
CACCATTCATTCACTACCCCTTCTATTATAATATTACTGTTATTAAAAAA
TCTGTAGACAATCTTTTAGTATAACTTCTTTTGTTATCTCTAAATATCTC
GAATGATATCTTACGCCTTCTTCTTACAGACCCTGTGGGACCATaacaat
ttttccagttggaGGGGGGACTGGAAAAATTgcccaaaatattgtcccca
gtgTAAAATAAAACTCCAATTTTTGAATCGCTGaatgaaatttcttgaaa
acaatTTAATTCAAATCTCCGGCCATAAAAAAACATAGGAATGTCAATCG
CCATCGATATTCAGTTCGTTATTTTTTACTcaactggctgaaaaatccta
tcgggtctgtgagaagtagGTTTTATCTGATTTGAAATAGCTTTTAATTA
ATAAACTATTTAGAGCAACTCAACCCTTGACCGATAATCCCATATGGTAA
ACCTAGCTTAAACCAAAAGAATTTTATACCTTTTTTTAAAAGCTGGTTCA
GTTGACCCCTTTATCCTCCAGACATTCTGattgaacttttgaaatctcta
gagagataaaaaacaaatttcaagaaACCAAATGCTTTTCATCCTCTGTC
AGTACGTATCTCTCTCTAATCACATCCTTTGAGACGAGTCGGTGATTTTA
ACTGTGTNTGTCAGTACGTATCTCTCTCTAATCACATCCTTTGAGATGAG
TCGGTGATTTTAACTGTGTCCTTGATAAAACATGACATTTCTATTGACAT
TGCGAATCTTATTTATTTACATTgaccacaaaataaaaaacaaattgaac
GTAAAAACTTGATTAATGAAATGAGTTTATGATTTATGGGAGTAGAAACG
TTCATTTGGAGTATCGGACTAACTTTTTGAGGCTTTCATAGTCTCTGTTT
CATGCTCGTGAAATGTTGAAATTTGTTAAACTTCGAAGCAAAGTTTATCA
TGTGaatctttcaaaaagtttttcatcaGGGAGCGAAGAaggtctgtttt
tttttatgttaaaaattcttttgaggTTTTCAACAGTTTGTTTGTTCCCT
CTTATTACACAACTTATAGGGTCCATAATGTAATATAGCCAAAGGGGACC
CCCAGGGGACCCCTTTTAAAcaataagaaaaataacaaaatgggTATAGT
TAATGTCGGATGTTTGTTTATGTACAAGTGTATGTGGTGtcactttttca
caaaaaaatctgACTATATTTTTATATGTTTGCGTGTGTTTGCAGATGCT
GTAATAAAGGGGAACAACATTGTGTTGAACTATTGGTCACAAGGTTTTTA
AAAAGGAAGTGacaattgattttttaaagttttttggatTCAGTAAAATT
GTTACAAAAAAGCTAACAACTTCCAATTATCCAAAGCTAATCGCTGTTCG
CTGTTCGACTAAATACCAAGCAGCTTTTTATTTGAGTCATGGCTTTAAAT
TGCTTGGTCAATTTTAACGATTTAGAATTGTGGAACAATGCACCGCCCTT
ACACCACGCCCATCATCATACCCACCACTCTCATGAAGCACCACACACGC
CCAAGCAACATGACGGTGATTGGGCGCATTTTTCACCTCAAACAGAAGAT
GTACCTACATCGAGTCATCCCAATGCTGGTGTAATCTCGTCTTCNACGGT
GATTGGGCGCATTTTTCACCTCAAACAGAAGATGTACCTACATCGAGTCA
TCCCAATACTGGTGTAATCTCGTCTTCGGTTGAGTCGGACAATCAATTGC
CACCGCCATCGAATCATATCGATATACCAAGAAAGTAAGaacgtttttct
aatatttctaTTCTAATGACAGCATATTTAGGGTTTGAAAATTGAAGGTT
GATAATTACACTTGTAATTATACATGGATattaccattgagtttaaagcc
gcTAAAGGGGCTTAATGCTGATTAAGCTACTTATTCTCCAAAACTAATTT
TACCAGTACGAAAATTATATTGTCGACTTCTAATGGACAGAAAGATTTAA
TAACGGATAGCCCATGCCATAGCAAACAAGCTTCGTTAGATGTTCGCACT
TGGAAACTCTATTTGAATTATTGATAGCTTTGTAATTTGATTATCGTTGA
GCTGCTGtgcagaaaatgcaaaaaaaattatcttatagaaaactttttaa
aagtctTAAAAATATAACGAGAAAACATGTTAAATTTATTAGAACTTAGA
TGTTAAAATCTTTAACATCAAATATTGTTCACGTTTTGTTAGTAAACAGT
TCTTTAATAGGGAAGCTAAAAATCTTTGAATGAAGTTGTGGTACGAGTGT
GTACGAgtacttgaaaattttaaacttcCTCCACCAGTTAAAAAGGAGAT
TGTATGAATTTTGAACGTCTGTGACCAAACTTTACGAGTATTTATTATTC
CCTTCCTGCTTAATACCCTCTACGCAAggagggggtcaagcagtttgTAC
ACGACTCCCATGAAGCTTAGAACGGTGGTGGTTCACTTTCAAAAGTGACA
AAATGAAAATCTGACCTCGAAAGCAGTTAATAGATTGTGTACTTAGTGAA
AGGTAGTGGTTGTCCTTTTCAAAATCAGTTAGTAGACAAAGTGTTCCGGA
gtaactgcttgaactcctctGTTTACGCCTTCACTTTACCCTAAAGCCAG
CAAGTTAGTATTCTCAATTCGGAATTTTTGAAGAACTGTTCGTATGCATA
ACGTATTTACGTATTTACATAGTTGACGTATGCTAAACATTCTGAGCTTT
GGCAGGTTGATTGCAGGTCAAATTACTAGCCGACCTTAACCAAATCCTGG
GGATACACTgagcagtgccgtaggaagcattttaatattggggggggggg
gccccgggggggggggggggaggggggggggggggagggggggggggggg
aggggggggggggggaggggggggggggggaggggggggggggggagggg
ggggggggggagggggggggggggctgaagtttagtgacgccgcgagggc
caaccatggtttggcccgaggggggaaattttgaaaacttgagctctaga
ttgcttgaaaatgcactcaaaacatccccttataagacaattatgacaaa
ttaaaaaagaaaaactttgctttttgcaaaatagccatttttgaaaaaat
tatttgggggggggggagctgaagtttagtgacgccgcgagggccaacca
tggtttggcccgaggggggaaattttgaaaacttgagctctagattgctt
gaaaatgcactcaaaacatccccttataagacaattatgacaaattaaaa
aagaaaaactttgctttttgcaaaatagccatttttgaaaaaatttttgg
ggggcatagccccccttgccccccccccagttgctacggcactgcactGA
GTGAcctacacctttttttataaggaaccttaacgaGCTCCGaactctga
gcctggagttccttttTTCTCCAGAAAAATTTAGCCTCAAAGCTCCTTAT
CGAGCTCCTTATTCacttagctgctaagtttggactGATTTAATACAGAC
GTTTATTGAATGTTGTTTCatcaatattttgatgatattttgaacttttt
atttaGGTTTTTGTGAATGTGTGTAAGTTCAAGTTTAACTCTTACtgttc
tcagcctgagcagtttcttaagttccttataaaacgtgttccttttaaaa
aatgtgtatactTATTTGCTAAATACTCATAAAGTTTAAATCTGCAGGGA
ACGTAGTTGCGGTCTAACCTACCTTTCTTGCTACTTCGTCAGCAGGTCAG
CTTACTTTTTTACTACAGCTCCGTAGTAGTTTTTTGACAGTATTGAGTAA
TCTACAACTTGAGAAATGAAACGTCATCACACATTCTCTCATCATTCGTC
ACTGCCCAAATGAGATGTACAAGAACCTCTGCAAAGGTCAAACTGTTACA
AGTTGTTAATAGAACTGTTGACAAAAGTTTATAGATGTAATTTTAATGCt
gctttttttacttttgtagTGAATTTTTTCTATTCTGTGGTAATAGATTA
GTAAGGCATATTGGATGTGAATTAAAACGTGTGTTGATTTACATAATTGa
ttgacaaaacaaaaaaaagtttttttgagtcATAAGAGATTTTGCGGCTT
GGGTTTTCTTTATCTGAATTTGTGCTACTAAAGAGCTACAGTTAATGTAT
GTAGTATGAAAGAGACATAGAGttaaaaaaatagagaaaaaacggttttt
aaaaaccctttttttaatCTCTATAAATATAAGAGTGGCTTATTACTGTG
ATATTAGAAAAAAAGAGTGCCCTGGACTTGCGTTTTTGTTGTGATAAGCT
ATAAAGAGTTAGAGTCAGAGAAAATTTGTCAATGAAGCAGTGACTTGTAT
GGGCTTAGATTGAATAATTTATAGAGAATCAAGTGTTTTTTTGGTTTGGT
GCCATGGATGTTCGACAATCTCGTTCAAGACCATATTATTCAAGTTATCA
GTAAGTTATTGTAGGGTCAGCTATACACGCTCATGCAATGTTTATATTTT
GTCCCCAGAAATTGGGGTCTGTCATTCGTCAACATTTGATACGTTTTTTC
TCCTTTTCAACTTTTAATTCTGGTGGTTCTGCTACTAGTAAAACAGAGTA
AGTTCTTTCGTTTACAGACTACCTGCCACTGAGTTTAAAGTGCTTTTATC
GCATTCAAATTTGCTCTGAATGCTTTTCAGTCCATCTAAAATAAACGTAT
AATATTAATCAATACCGAGTTTGACCCCTATAATAAAGccggatgagctg
gagtttttacaagctggGATGCGATTTTCTTTGTGTGTATTTTACGGAAC
AAGCACACCCGATATGttatactttcaaaaaattctctaaCCCCAAGttc
cgaagtcccgagttgaactgtgccaacactctccaaagtataagcctttg
aaattttgaggatGGTGACGCCTATTAGAAGGCGGTtctctgaaaaatct
ttttctttaagAATTCCTTTGATAAGGGGGCCTGGAATTATTTTGGAGAa
actgaaattatgacgtcacccgcaaaataactcggaaaaaataacttggg
aaaaaataactcggaaattCCAGGCCCCTTCGATAAGTTTCACTGCACTA
CGATATTCTAAGTGGCTGAGTCGGTTTTGCTCCAAAAGGTTCTGGAAATG
TAGTACAGTAGAGGAAATTTTCCGTTCAAGGAGCTTAGGCATATTTTGTA
TCAGTAGCATCAATAAGTTCAACATAGTTCGTTTCAATCGatcaaatcaa
attcaaaagagGCTATTAATCTCAATATTACCTACTATGCTTATATCTCT
AAGTAGTGGGTAGCTCAAAGGAAGAGCATTCAGCTACGGTGTGTTCGTGG
GCTCAATTTATCGACGGGTCGCAAACTAACTATATCTCTTTTTCCCTCCA
GGAGAAGCCAAACGGAGAGCATGGCGTCATCCAGCATGGCATCCAGTATC
CCAGAAAGCACGAGTAGTGTTGACAGTAGTTCCGACAATGAAGAAATGAG
AATCACGCAAGAACAAAGAGAATATTACACCAACCAATTCAAAAGTTTAC
AACCCAATGAAGACGATGTTATCAAAGGTAACGATTATCgcaggaaaaaa
tctttaaatcacACTCGTGTGAAAACTGATTTCCAAGGGTGAGATTCGGT
TCGTTTTCACACTATTTGTTTACACCTTGTTGAATCAATTATCAAACTAA
AAACTCAATCTGGAATCACAATCTGACTTAATTCTTCTTAAATTTGAGGT
GTTTTAATCTAATACTTAAATCATCATGGTGTAAACACTAAGGGTGCTAT
TTACGATTTCACACCCGTGTGAAAACGAACCGAATCTCACCCTGTGAAAT
AAGTTTTCACACGAGTGTGATTTAacgattttttcctgtgtattaTGATA
GTTAATGTTTTTGTCCGAAAAGTTATACGCCCTTATTTTTCGACCTCGTC
CTTCCACAGCCTCAAAGCGTTTAAATAATGATGAAGTTTTGTTAATAATG
ATGATTCTAGCTCATTAAACTATAACTGATTCTGTTTCAACTACagtgaa
gtttttttttaactcgctggaacctctataactcgataGTTTCCTTAAAA
CGAACAAGTTTGTCTTGGAGACTTCCAATGTATTTGTTTCATATCAAGTT
GTATAActcattgaatttttttgtctaGGTCCCCAAGCTCGTGATTTCTT
CTTGAAGTCGAATCTAGCGATGGAAACTCTTTCTAAGATCTGGTATGTAT
GTTTCCCTTGTAGTAATTATCTGTCAATTATAATATATTACCCCCTCTAT
ACATGTAAGGTCTTCATTCGATTGATCTTAAACAAGCTCATTACAGCTCG
CTTTGGTGCTTTCAATTAGAtttgaactttttcttttcGACGAGATTTGT
CAATACAGTGGAAATTTGATTATTGAAACTTGCATATATTTCTCTTTCTC
AACAACCCTTAggaatttattttattaatcAAAGTTTTATTCAACCTCGT
CCCTGTGTAAaacaggctttatttacgttagtgattgacgccagagaata
tcctggtgttggctgatgcgagacTATCATCTCAAAGTGAGAACTTctca
aacaacaaaaaagtgaCGCATTCGAAAAGCAGACAATGCCAGGGTACTAT
CTGGGGTTATCAGTAATAAGCATAAATAAcagataatacgcagggaatgA
GGTTGTGTTTTATTGACAAATTGTTCACAAATAATCGAATAACctcttta
aattaaaaatttcaggCATCTATCAGACTTGGATAAAGATGGCGCATTGA
ACTTGGAGGAGTTTCAGATTGCAATGCATCTGGTTGTGTTAATTAAACAT
GGTTACGAGTTACCGATGGTTTTACCTCCTTCCCTTCTTGGTCAAGAGCA
AGGTACGTTGTTAGTCTGCCGTCAAAACATGCCTGGTTATTTTAAAATAT
CATAATTTGACTTTATCTTTAGATAGTTGATGATTAGCTTAAGGTTTATT
TCCATCTCAAACCATTCTAAGGTTGTTGTTTTTTAGTGGTCGCTAACTGG
ATttctatataatatatattcatgatatgcaccactgcaatgtcttctga
cattacgtcatggaaccaatagctcattggttggaagtgacgtaaaagca
gtcaatacgtcactctCAACCAATCAgttattgggtggaacggaagacat
tgcaatggcgcatatcatgaatagaataTTATTTTTATCTCAAATGTCTC
CTAATTGGAACAAGTTAACAATACGTTAtaatatataaaggtcagtggtt
ataccttgactcgaacaaatttgtgttcgcTGCGaagggttcgagttatg
gatacTCCtctgtaaaatgtttttttttaccaccgggaATCTAGTATTGT
ATCCGAATCCATATAATCCGAAAACAGGTGACTTTTTATGTTTCTGTATG
ACTTTTAAAACTTGTCCTTTCATTATGTCAGTCCATCAAATGGCAAGTCA
AGATGGTGTGGATATGAGCGATGAAGATGAGAAATTGATTTCTGATGACG
AAAAACAAGAATCTGGTGATGTACGTAACGCTCTTTACGTCTTGCTATTT
ACATATTATGGAACACGATAGAGTTTCAATAGTATTCCAAGATAATTAAG
ATAATATTATCCCGAATAGTTACTCCTTCTCGGTTTATAATCCGCTAAAA
GTGGTGAATTTTGACAACTCAGAGAAATTGAAAGGTTTTCCTTCACTCCG
CTTTTACCATGGGATTAAAAACTGTAGACGTACAGAGGAGACAAAAACGT
TCTGACGATTCGCGGATAGGATATAGCGCTAGAAGTGTTGTATAGGGTAT
CTTATAAAACTGTTTCTCCTTTATTTCTAGTGGTCCGCTGAATTTGATGC
TACGGATGGGGTGAGTTGATTTATGGTTTAGGTCTGGCTGTACTTATAGT
GCAGTGACCATtatataattatattttataGATATTTAAATGAGATTTAT
CATGTGCTATAGCTCGCTGTTTCAAAATACTACAAATTTCGATTTGGTTA
TTCCTTACCACATTCCTTCTCCACATCATTCCATATGATATGTAGGTGAT
TTTCTGTACTgctattttcaaaagataacCTCAATCTTTCAGTTTATGGG
AACCTTTACTTGAACACTCCTACTTTTTCACTGCAGGCACCAATTGATCG
TGGTGAACGTATAGTGCAAACTTACGCGCAACCCTCCCCTACGTCCGTCA
CCGTGCCGTCAGAAACTCGCGTACAACCCGTCTCGCACATGATCGAACAA
CAACAGATCAACCATGACGACGAAAACGAATTACCTTCCTCGCCTGGTGC
CTTGGCTTCTCCTAACGATGTCGCCGCGGCGGGTGGCAAAATGACAGCTA
TCGCACGACCCCGTGTAACCGCTAATAAAAACGTTAATCTGATGGATGCG
TCACCATGGCAGCTCCTGCCACCACCGTCCGGGAAAACTGGCAAATTCGG
TGGCCCGAATGGTGGTACAACCGCGAAGAAAGCCTTGAAAATGGATAGTG
TTGATAGTGAATTAGACTCGGCGGGTGTCATCAGTGATAGCGAAAATAAT
AAACTGGTCTCGATTGATAATCACATGTCCCAAACGACGTCGCCGACAAA
TGGCGACAGTAGTCTGGATAACCTCGACGACGACGAACATTTGACGGACG
ACCACGATCACGAACGTTTGAAAGTCAAGAAAAAGGATTCGGCATATTTC
AGGAATTTGTCAAAAGAGAAATCGCGTTCGATTGATAGCTTACGGTCAGA
TATTTCGGAGAGTAGCATGTTTGAATGGAAGAGACAATCCATTAGACGAG
AATCGAGACCAAGGTATGACTCGTTTTCCCAAAGTTGAAACAACTGAATT
ATAGTGAGATTATTCTCACTGATTCTGATTTCGAtacattttgttatttt
ttatatttattttaagGAAAACGTCTTCTTTGTATTATTCCAATTGCAAA
ATCAATCGTTGAAGAACAAGAGTTATTCGGTAGGTAAACTTTCTCGTAAT
ACTTTTTCCTTATTAGGTCATTTACAGGGGAAAGCACACACGACACACCG
CAATTCGAATCACCGCCCGTCCCACCGCCACGAACGAATAAAGGACACGC
CAGGGCGTCATCACTCGATTTTAATCAAATGTTCCATAATCGTTCACCTA
GAGTCAGTTCTGGTGAGTGCTAATTGCATTTTCGCGGTTCATTtctctgt
tgttttttttacgAGGAAAGTaagagaaaaattgaaacacTTATCAACCT
TTAAAGCATTAGAACACTGGGTTCGAGTCTACTAAGATTAATACAGTTAC
ATTCTCAAAGACAACGAATTCTGACctaatttttcttgtaaatttcTTTA
CCAGTCCCTTCGAAAACAACCGTGCTTTTATGGGTTGATTGACGTCAAAC
ATTTGAAATGctaagaaaagtgaaaaagaattgatatttttttagtcACT
CGAGCATTAGATATCTGCGAGATAATTGTGCCTGAGTGGTTGTAATCTTT
TAGTATTATGACATACATCAATAATAAGTAACTGACTTTCAAATCGTTTA
ACGCACGTTGAATTTTCTCTTTTAGAACCGAAATTACAAGTAACGACACC
AACTGACGGAACAGGCAAGAATCCGGTAAGCCCTTTGAATTCTACATTCA
ATACTACATACACATTATGCTTAATTTTTGCATTATAACTTCACGTAATT
TAACGCAGTAACTTcactctattcatgatatttatgacgtaatgttttcg
acggaaacaccccggtttttgccagtagtggcaaattggAGCTAtagaaa
aattgctcaaaatttgcCACAACTGGCAAAAATGGAGgtttttccgtaga
aaacattacgtcatgaatatcaagaattctCACTATATAATATGCATGTG
ATTAACATCAATTTTCAGCCACAAAAACCACCACGCTCAAATCCACCAAG
CACTTCTTCAACTAATAACTCGTCTGCCGCCCCCACTGCTGCAGCCCGCC
CTCGTTCGTCCAAGGGTGATGAATATCATAGGTCACGATCACTTGATGTA
AG

Coding sequence (CDS) from alignment at sc0000010:226374..238625+

>TCONS_00001336 ID=TCONS_00001336|Name=TCONS_00001336|organism=Clytia hemisphaerica|type=CDS|length=1482bp|location=Sequence derived from alignment at sc0000010:226374..238625+ (Clytia hemisphaerica)
ATGGCGTCATCCAGCATGGCATCCAGTATCCCAGAAAGCACGAGTAGTGT
TGACAGTAGTTCCGACAATGAAGAAATGAGAATCACGCAAGAACAAAGAG
AATATTACACCAACCAATTCAAAAGTTTACAACCCAATGAAGACGATGTT
ATCAAAGGTCCCCAAGCTCGTGATTTCTTCTTGAAGTCGAATCTAGCGAT
GGAAACTCTTTCTAAGATCTGgCATCTATCAGACTTGGATAAAGATGGCG
CATTGAACTTGGAGGAGTTTCAGATTGCAATGCATCTGGTTGTGTTAATT
AAACATGGTTACGAGTTACCGATGGTTTTACCTCCTTCCCTTCTTGGTCA
AGAGCAAGTCCATCAAATGGCAAGTCAAGATGGTGTGGATATGAGCGATG
AAGATGAGAAATTGATTTCTGATGACGAAAAACAAGAATCTGGTGATTGG
TCCGCTGAATTTGATGCTACGGATGGGGCACCAATTGATCGTGGTGAACG
TATAGTGCAAACTTACGCGCAACCCTCCCCTACGTCCGTCACCGTGCCGT
CAGAAACTCGCGTACAACCCGTCTCGCACATGATCGAACAACAACAGATC
AACCATGACGACGAAAACGAATTACCTTCCTCGCCTGGTGCCTTGGCTTC
TCCTAACGATGTCGCCGCGGCGGGTGGCAAAATGACAGCTATCGCACGAC
CCCGTGTAACCGCTAATAAAAACGTTAATCTGATGGATGCGTCACCATGG
CAGCTCCTGCCACCACCGTCCGGGAAAACTGGCAAATTCGGTGGCCCGAA
TGGTGGTACAACCGCGAAGAAAGCCTTGAAAATGGATAGTGTTGATAGTG
AATTAGACTCGGCGGGTGTCATCAGTGATAGCGAAAATAATAAACTGGTC
TCGATTGATAATCACATGTCCCAAACGACGTCGCCGACAAATGGCGACAG
TAGTCTGGATAACCTCGACGACGACGAACATTTGACGGACGACCACGATC
ACGAACGTTTGAAAGTCAAGAAAAAGGATTCGGCATATTTCAGGAATTTG
TCAAAAGAGAAATCGCGTTCGATTGATAGCTTACGGTCAGATATTTCGGA
GAGTAGCATGTTTGAATGGAAGAGACAATCCATTAGACGAGAATCGAGAC
CAAGGTCATTTACAGGGGAAAGCACACACGACACACCGCAATTCGAATCA
CCGCCCGTCCCACCGCCACGAACGAATAAAGGACACGCCAGGGCGTCATC
ACTCGATTTTAATCAAATGTTCCATAATCGTTCACCTAGAGTCAGTTCTG
AACCGAAATTACAAGTAACGACACCAACTGACGGAACAGGCAAGAATCCG
CCACAAAAACCACCACGCTCAAATCCACCAAGCACTTCTTCAACTAATAA
CTCGTCTGCCGCCCCCACTGCTGCAGCCCGCCCTCGTTCGTCCAAGGGTG
ATGAATATCATAGGTCACGATCACTTGATGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000722	XLOC_000722	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001336-protein	TCONS_00001336-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000010	supercontig	sc0000010:226374..238625 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6441	13.6413	6.26029	7.57723	39.3528	29.7879	27.3675	31.4503	12.1447	17.4115	10.6413	8.66142	9.51883	10.4007	10.6179	9.14658	12.7318	11.7359	10.1053	10.0924	7.99621	12.155	12.5141	12.9356	15.4455	15.7188	11.6731	9.26541	13.6055	15.8612

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000261	EH_dom
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00001336 vs. Swiss-Prot (Human)
Match: REPS2 (RalBP1-associated Eps domain-containing protein 2 OS=Homo sapiens GN=REPS2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.639e-25
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3

Query: 1548 NEEMRITQEQREYYTNQFKSLQPNEDDVIKGPQARDFFLKSNLAMETLSKIWHLSDLDKDGALNLEEFQIAMHLVVLIKHGYELPMVLPPSL 1823
            +E  RIT+EQREYY NQF+SLQP+    I G  A++FF KS L++  LS IW LSD D DGAL L EF  A HL+V  K+GY LP  LPP+L
Sbjct:  273 DEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTL 364

The following BLAST results are available for this feature:

BLAST of TCONS_00001336 vs. Swiss-Prot (Human)

BLAST of TCONS_00001336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
REPS2	5.639e-25	57.61	RalBP1-associated Eps domain-containing protein 2 ...	[more]

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TCONS_00001336 (transcript) - C. hemisphaerica