TCONS_00001399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001399
Unique NameTCONS_00001399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3126

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001399 ID=TCONS_00001399|Name=TCONS_00001399|organism=Clytia hemisphaerica|type=transcript|length=3126bp
TGAGAAAATAGATTTATTTTGTGTGGCTAGCTGCTCAAGTTCCTCAAGTC
ACTGAAGTCAAGCAACGAGGATTTTTGATATCCTTTAATTATGAAGTGTA
CTTAGTTTAAAAAATGGAGTTTTTTAATTACCAATCTGTTTATATGGTTT
TCTTGGTTTCTTTTTGGCAAGCTCATTTAACATTACAACTTGATTTTGAA
TGTACTTACAATGGGACAACACTTGCTGACAACGTCAAAATCTTTCTCGA
CTTAGAGGAAAATGGAACATCAAATCTAGTGTGTATGAAAATGCAAAACC
AAGGCTTCGTTGAAGAGCTTAAAATGAGTGTTTCCAGCAGTGACACTGAT
TTGGTGACTCTAATCTTTAATTCCACATGGACTTCAGAAAAAGTCCTAAA
CATTTCTGACCATGATATATTTAAAACTAATAACCCACCGAGTTTCAACA
TGAAGATTTTGGTTTGTGAAATATATTACGTCGATGCTTTACATGAAAAT
GTTaccataataaaatttttggctGTTACAGCACATAGATCATTCAGTCA
ATATCAGAGGACTTTTGGTTTGGATGATTCAAAGCATGTTGTAGCTGAAA
GTCCATGTTCTAGCATTGTTTCTTACTGGATACCAAAGATGTTATCGGAA
ACGAAAAACTCACTTCACTTGAAGATCAGCAAAGAAACACTTCTAATGAT
ACCCATTCTTATGAGTGAAAGCCAAAAGATTTCAGAGAATTCAACGGTAA
CCCGTTTCGTTGTTATGAATAATCACATCATTCTGGTAGTTGATAACCAG
TGGCTATGGAAAGGAACATTAGAACTATCTGGGGATGTGAGAATTACCAA
AGCATCATCAAATCGAGTCCAAGTTCATTTGCTAACAACAACGATTCACT
GTCCAATCACTGATACCCCTGGAGTCGAAGGCTCTGAAACAGCGCTCTTG
GTACATCAAATTGGAAATGGCACCTTCCTCAACATTTACGCGCCGCCCAT
TGAATCAACGCCCCTTTACATTGTGACTTTGACAAATATCACTGGTGAAG
ATATCATAGATGTGAAATATGATTATGGTAAAAGACAAGTTGTCGTACTA
TTGGTTACAAATACAGTACACGCATTCTCGTTATCTGGAACACTGCAATG
TGCGCCGATAATTTTGAAGGATACACATATTAAAAACCAATCAAGACTTC
TCGTAAAGTGCAACCTTCTGTTGATCGTCACAAATGAAATAGTTGTTTGG
ACATCAACAAATGGTGGATGCAATTGGAAACGACCTATACAATGGAACAA
CATCCTCCATGCAGACTTTGAGTTCCATTCTGCCGATACATTGAAATTTA
CATCTAACATAACATCAAGTTACGGAACTCCGCTAGAAAGCTATCGGGAT
TATGATATTTTATGGACCAAAATTGGTTTCTTACGTCCACAAGCAGCATT
GAATAACTCTAATTACATGTTGCTCCTCAATGACAAGATTCCGGAAAGCA
ATAACCCTTATCTTGATTTAGACATTTTTGCCGTAACAGAAACCGCAGAA
GGATTCCAGTTAGAGTTTACGCCAAATGAGACGAAGTTTCCTGAAATTTG
GATTGGTTCCTTGGTAAAGCTTGGTGACTACTCATGTCGCGTCACGGCTG
TTTTCAACGCTACTGTCGAGATTTATTGCTACAATAGTAGTTTAACATTC
ACAAACATTATCGACTTTATCCAGCAACGACGCTGGTTTAGTGTCGATTT
CTTTTATGCAAGAAAAGTAGAATGTCACCTTAGTTTTAATGTGAATACCA
CAACCattgtttttcaaaagaaaccagACACGGAAATTGATCACGTGTTT
TTTTCAACGCCCCCTCTTCATGCTGGGACAAAGGAAACAAACAGTAGCGT
TGCTTGGACTTTCAAAGATCCGCTAACTTCAATACCAAGTTCGTCAAACC
AAGTTTGTCTTTACCAGAAATATAAAACCTTCCAAGAATATATTTATCAG
AATCCAACTGATTGTCCAATAACGTTCACAGTAACTGGAATCAACGAATC
TTACATACATCTAGATATTGATGAACATTTGGAAATCTCCGTCAATCTGA
CCATTGATATGATTGTACCGTTACATGAAGATATAAGCGATCTTGATTGG
CTCAAAACACAAGTTTCAAATCATGAAATTGTATGCTTAAGAACACATCG
TGAAAAATCGAGGAGAGCTGAGAAAATCCGTCTTCAATTCCATCAATCTT
TGGCAATATCAGGCATCAATGTTGTCACTATCAAATCAACTATTTATAAT
TCGAAATGTGGTGGACAAAGTCTAAAATTTCAGATTCTCAATGTTTGTCC
TCCAGACAAGAAAGTGATCTTCGAATATCCAAAATCCGTTCAACCAAACG
ATTTTGCTGACGATGATCAAAAACAAGACTCAGAAGGGATTATTCGGGTC
TTTCATTTACCAACCAACTATCAACCACCTTCTTCTAAAGGTATTGGTAT
ACCACAAACGCCGCATGTATATAATGCAGACCCGGCCAAACCAATGTTTC
ATAAGAAATATCTGGCAAATCAAATCGATCCAGTcttcaaaaaatgtaaa
gatAAACGAAACAGgaCGATGTGTGGGTGTACAAAAGCTATGGAAATTTC
TACGAagattagccaatcagattgcatcAAGAAAGTATATCGTCTTCTGT
ATCCAGAAAAGTTCATCCCTCGattacttttgcaaaaaaaagctaaaaac
aaTACTGCTTTCGATAAGCTGATGCGTTTATCTGAACTCAATGCCAGAAC
TGATTATACCCTAACCAATTCAGTTCGAGTCTCAAACGGAGCCGAAGCGG
TTAGTATGAAATCAAATACCACCATTGAACTTAAAGGATCGGGATTATAT
CATTTTCAAGTGGACGTATTTGATAAAAACGTGTCGTATTGTAATTTTGA
AACGGAATTTCTAGTCTATGTTGACGGGACACCGCTTCCAAAAGCCGTTG
AATCGCTTGTCGAGGCTTTTACCGCTTTtgtttttggttttattttgttg
GGCTTGTTCTTGTACCAATattacaaaaagtaaaaaaataggaaaaatca
CGCAAAAATGTTTTACTTCAGAAAGG
Run BLAST on NCBI

protein sequence of TCONS_00001399-protein

>TCONS_00001399-protein ID=TCONS_00001399-protein|Name=TCONS_00001399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=989bp
MEFFNYQSVYMVFLVSFWQAHLTLQLDFECTYNGTTLADNVKIFLDLEEN
GTSNLVCMKMQNQGFVEELKMSVSSSDTDLVTLIFNSTWTSEKVLNISDH
DIFKTNNPPSFNMKILVCEIYYVDALHENVTIIKFLAVTAHRSFSQYQRT
FGLDDSKHVVAESPCSSIVSYWIPKMLSETKNSLHLKISKETLLMIPILM
SESQKISENSTVTRFVVMNNHIILVVDNQWLWKGTLELSGDVRITKASSN
RVQVHLLTTTIHCPITDTPGVEGSETALLVHQIGNGTFLNIYAPPIESTP
LYIVTLTNITGEDIIDVKYDYGKRQVVVLLVTNTVHAFSLSGTLQCAPII
LKDTHIKNQSRLLVKCNLLLIVTNEIVVWTSTNGGCNWKRPIQWNNILHA
DFEFHSADTLKFTSNITSSYGTPLESYRDYDILWTKIGFLRPQAALNNSN
YMLLLNDKIPESNNPYLDLDIFAVTETAEGFQLEFTPNETKFPEIWIGSL
VKLGDYSCRVTAVFNATVEIYCYNSSLTFTNIIDFIQQRRWFSVDFFYAR
KVECHLSFNVNTTTIVFQKKPDTEIDHVFFSTPPLHAGTKETNSSVAWTF
KDPLTSIPSSSNQVCLYQKYKTFQEYIYQNPTDCPITFTVTGINESYIHL
DIDEHLEISVNLTIDMIVPLHEDISDLDWLKTQVSNHEIVCLRTHREKSR
RAEKIRLQFHQSLAISGINVVTIKSTIYNSKCGGQSLKFQILNVCPPDKK
VIFEYPKSVQPNDFADDDQKQDSEGIIRVFHLPTNYQPPSSKGIGIPQTP
HVYNADPAKPMFHKKYLANQIDPVFKKCKDKRNRTMCGCTKAMEISTKIS
QSDCIKKVYRLLYPEKFIPRLLLQKKAKNNTAFDKLMRLSELNARTDYTL
TNSVRVSNGAEAVSMKSNTTIELKGSGLYHFQVDVFDKNVSYCNFETEFL
VYVDGTPLPKAVESLVEAFTAFVFGFILLGLFLYQYYKK
Run BLAST on NCBI

transcript from alignment at sc0000010:1052094..1061179+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001399 ID=TCONS_00001399|Name=TCONS_00001399|organism=Clytia hemisphaerica|type=transcript|length=9086bp|location=Sequence derived from alignment at sc0000010:1052094..1061179+ (Clytia hemisphaerica)
TGAGAAAATAGATTTATTTTGTGTGGCTAGCTGCTCAAGTTCCTCAAGTC
ACTGAAGTCAAGCAACGAGGATTTTTGATATCCTTTAATTATGAAGTGTA
CTTAGTTTAAAAAATGGAGTTTTTTAATTACCAATCTGTTTATATGGTTT
TCTTGGTTTCTTTTTGGCAAGCTCATTTAACATTACAACTTGATTTTGAA
TGTACTTACAATGGGACAACACTTGCTGACAACGTCAAAATCTTTCTCGA
CTTAGAGGAAAATGGAACATCAAATCTAGTGTGTATGAAAATGCAAAACC
AAGGCTTCGTTGAAGAGCTTAAAATGAGTGTTTCCAGCAGTGACACTGAT
TTGGTGACTCTAATCTTTAATTCCACATGGACTTCAGAAAAAGTCCTAAA
CATTTCTGACCATGATATATTTAAAACTAATAACCCACCGAGTTTCAACA
TGAAGATTTTGGTTTGTGAAATATATTACGTCGATGCTTTACATGAAAAT
GTTaccataataaaatttttggctGTTACAGCACATAGATCATTCAGTCA
ATATCAGAGGACTTTTGGTTTGGATGATTCAAAGCATGTTGTAGCTGAAA
GTCCATGTTCTAGCATTGTTTCTTACTGGATACCAAAGATGTTATCGGAA
ACGAAAAACTGTAAGAATTGTTTcgtgtcccggggggggggtactaggtt
ggTGAGTTTGTGAGGTGATGGGTATGTcagagccaaaaatcgaaaattga
agctttgagaGGAACCCGTTTTGGGACCcttaaaaaaatctcaaaaattt
tatcgattttcactcgatttttgtcaaaattttgaaaattcacgACCGTT
AGAGaggaaatttcagaatttttgaatttcgtgatttttggacCCTTGCA
GAGAAtcgattttctttttaatggtgCTTGTACCTCTTTGAGTTTGAGAG
ACTTTCAAGGgtgtagtagggggaaatttgttcgttttttttttaaggtc
gctcgatttttttagtcaaaacacttgttatacatttttggaaagctaag
gggtaggggaatcaaaataactttggtgccaatttttttttcggacaaat
atgacggtctaaGGCAAAAATTaaagggtgaaaaattaacgaaaatttta
gcttgTGAAAATGGAgatctgttgtatatttttggaaagctctcaaaaaa
ttaagattagagatatattgcaagtataggtgatttctgtacctaactcg
ataCATTAACcctgtttttcagccagaaacagctgttttgttcagttttt
gcgctttcggaagctcaatatctcaagttaggtactgaaatcaccaatat
atcactaatcttaatttttcagagctttccaaaaatatacaacagacgtc
tctattttctcaagctaaaattttcattatttactGACTGATAATCTTTG
CCTGAGACTGTCATATTTGTcgaaaaatcacaccaaagtgtccgaaaaac
aattggcacccaagttattttgattcccctattagctttccaaaaatgta
taacaagtgctttgactaaaagaATCGAGCGATTGCACAAATTTCCTCCT
ACTAGTGTGAAAAAGGGGCCCTTATGGCTCGTACATACCCGgaacccatt
ttgcctaagtgccccccccctcccccgagGGCTTTGTACCCGAGGGCTAA
AAGTCAtgtaaagaaaattatttcagTTTCATCCAAGATTTTAACCCAAt
cgtttttctcaaattttagagcattaaaatgttctttatctCTCCTCTCG
CACATTCTAGAATTCTTACATGCCCTTTCGATTCTGACCTTGTTAAAGAT
TAAAAATAGTTGGCACACACATTTGTCGATTCCTTTTTCAGCACTTCACT
TGAAGATCAGCAAAGAAACACTTCTAATGATACCCATTCTTATGAGTGAA
AGCCAAAAGATTTCAGAGAATTCAACGGTAACCCGTTTCGTTGTTATGAA
TAATCACATCATTCTGGTAGTTGATAACCAGTGGCTATGGAAAGGAACAT
TAGAACTATCTGGGGTGAggaactttttcaaaagttataacCTGATGAGA
ACTTAGACTTATACCTTTTACAAATGCTTTCAGAAATCACTTGTGGCATT
CTTCTTTAAGAAAAAACGTTGCGTTACTTCTTTGGTTTTCTGGTTAGAAC
TCATTCTGACTCATTTTCAAAGCCTTACCTCTCATCAGAGACTTGATCTG
ATGGCTTAATGTCTTATCAGAAAACACCCCTAACCGCTTCGCCCATATAG
TGACCCGACTCCATATAATGATCTACTTTCTAGCCAATGAGAGTGATGTC
TTAAGAGAACAAAATACTGTTGGGTCTTCAAAATGTCCGTTATTTTCAgc
atggtttcagccccccagaaatctgaagggcacctatGCCAGGTTAGTAG
TAGGGGGCTAATgttttgcaattctttggggttacctattcattaagggt
acctagctgtcttgatatgatggaggctctgggggctggttatattttcc
aaatcaaatatttcaaaatatttaaaattattgaatttttttaccccagc
acctagtttcccatccaatttttctttcgtttcccatCACACCATccttt
gctatatttttctaatgtgattgttttgatttacggccgccatctttata
gcataacaacaaagctTACCAGCAGGTATTCATGCGTGAGCGCTTCCCAT
GCTGAataggggtacctaactcaaagcaatttctcaaggggacctaacTC
TTAGGGGGCACCATGCTTCAATGGGGCatctgaaaagtgggctgaaacca
tgtttTAATGAGCCCTCTAGCGCTTTTCGTGTGATTGGGGTTTTTTCAAA
CTCGTGATTTTACGATTGAAGATTTTAAAGTGCGTGATTGTGTGATCGGA
GGAACCGACGTGATGATCAACATGATCgtgatagaaagaaaatttaactc
gtgataACGTGACTGGGGGTCTCTTCAATTGGTAGGAAGTAAAGTTCTAa
agtaaaattcaaaatccaGTGGTTACCCACAAAATTATAGTGTATTTCGT
ATCTGGAATAAATACTCTGTTTACGTTTCTAAGGGTTATTGAAATTCATG
GTTTCTTGCTAACCGGGACACATTTCTTCGGTAGGTATGGCTTCCGTCTA
GGTCAGGGATGTAAACCTAATTGCTGAAATCTCTATAATTCTAGGATGTG
AGAATTACCAAAGCATCATCAAATCGAGTCCAAGTTCATTTGCTAACAAC
AACGATTCACTGTCCAATCACTGATACCCCTGGAGTCGAAGGCTCTGAAA
CAGCGCTCTTGGTACATCAAATTGGAAATGGCACCTTCCTCAACATTTAC
GCGCCGCCCATTGAATCAACGCCCCTTTACATTGTGACTTTGACAAATAT
CACTGGTGAAGATATCATAGATGTGAAATATGATTATGGTAAAAGACAAG
TTGTCGTACTATTGGTGAGTACTgtaaattttgtcaaatttgacaatttt
aaAAATTCGTCAAATTAGCTTAATCGCCAAATTTAAAGGTGCGACCTCAC
CAAAATATATCGATGTTGCTCTCtgcaataaaaaagaaaactccagttta
ttgccaccgcaggaagcctaaagcttccgaggatggcattcatagcttca
cgcataaggaagttgggcaaacatctcataattttgcgcgcgttttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNggtaacattcttagcttgactgtatttctattgttt
tatcatcattaaaaacacttttccggattttttttgatctgattacccat
tttcaaagctctatgtctttttttattacctcagggagtcgaattaaggg
aaattcctttttttgttggaaaattccctatttaaaccacaagtagttat
taaccgctTTGAGCAAtgcaaattagaaatttttatcctttcaaaaactt
gtcgtttgactattacagtaaaatggcagtttagtacagtagcgtttagt
atgCTATAAACAAACCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTATCTATGAGCTGGACACaaattgctaatatttgta
gactagattttgcttcagatgagatgccattctaacagaagtaacggcta
taagtaacatttctttccgaattcaacaatttatttgatcgtttttctgc
ggtggcactttaatgaaaattatggctagtaaaatcttctattttgaaat
ttcaaagaatCCTGTATTCGGTTCTGAGAAGAACTTCCAGTTTAAAAATC
GAATTCAAAAACCTCtcatataaaacttactaatcaaattcaaaaaccTC
TCATATACAACTTACTAATCGagctaatcaagtttctaaaacttaAGAAC
ACAAAGACGAGGGTAACTCTCAGACAGGAATTCTATACACTTTGTGCATT
TTCTATATTacaacatatcagaggggatgcgtgcagtcTACAGTCAAAGC
AACGAGCAGAAACGTGAAATTAAAATTTAGACTCCGTTCTCTTTTTAGAT
TTCATTACTTTCGGCAATCGAATTGATATTtctcgattgtgttcgattac
gttcatCAACAAAGTGTCAATCAACTTCTATTTAATTTGTTCATTATTAT
TCCTTTTAGGTTACAAATACAGTACACGCATTCTCGTTATCTGGAACACT
GCAATGTGCGCCGATAATTTTGAAGGATACACATATTAAAAACCAATCAA
GACTTCTCGTAAAGTGCAACCTTCTGTTGATCGTCACAAATGTTAGTACA
TTTCTGCCCAgttctgacaaaaggaagtaactgacatttttatgaatttt
cattttttagcaaaaatggATTCTTTGGgtcaaaacttaatttttttagc
ttggaaaaaagttttttgtgttGTCaatctggaaaaaaaatttgaatata
gtAAAGAAGCAACTGACAGGTTTCTGGAGAAtattttctgacaaaaagaa
gtTAATGACTGTTTTGCTTCTTTCTGTCAGAAAAAGTCATCACTTTTGTC
AGAAATGTTCTTTCAGGAAACTGGTCAGCTACCTCTTTACTGACAAAGCA
ACTGTCTTGTTTTTCTCTGCAACAATGAAAATTTGGAGAAAAGCAGTGAT
GCTCAAAACTTATCTTCGATGAGTAGAACAATAATCAGTCATTTGTTTTT
TGATATGTACAGTACTTTCTGCATCCGATGCCAGCATAAAGCGCGCTTGG
TCAATTTTCTCAACTTCAACTTCATGTcagttacttccttttgtcagaaa
tGGGCAGATTTCTAATCTTcatgatattttttaattatatatATGCAGCA
ATCAGAGTTTAATTAAGATGTGGTGGGGTCAGATAGAATCTAACTTGAAC
TTCAAAAGAGCCAAGTCAATACTCAAGAGattattactttttttaaacac
cCGACCCCCGTATCAGCCATAACTCGATAGAATCACACTCTCCATAGATA
TTCTATCATGCagaatttttaacaaagaaaaatctATAATAACTTTTTAC
ATACAAATACTCCACATTTAGGAAATAGTTGTTTGGACATCAACAAATGG
TGGATGCAATTGGAAACGACCTATACAATGGAACAACATCCTCCATGCAG
ACTTTGAGTTCCATTCTGCCGATACATTGAAATTTACATCTAACATAACA
TCAAGTTACGGAACTCCGCTAGAAAGCTATCGGGATTATGATATTTTATG
GACCAAAATTGGTTTCTTACGTCCACAAGCAGCATTGAATAACTCTAATT
ACATGTTGCTCCTCAATGACAAGATTCCGGAAAGCAATAACCCTTATCTT
GATTTAGACATTTTTGCCGTAACAGAAACCGCAGAAGGATTCCAGTTAGA
GTTTACGCCAAATGAGACGAAGTTTCCTGAAATTTGGATTGGTTCCTTGG
TAAAGCTTGGTGACTACTCATGTCGCGTCACGGCTGTTTTCAACGCTACT
GTCGAGATTTATTGCTACAATAGTAGTTTAACATTCACAAACATTATCGA
CTTTATCCAGCAACGACGCTGGTTTAGTGTCGATTTCTTTTATGCAAGAA
AAGTAGAATGTCACCTTAGTTTTAATGTGAATACCACAACCattgttttt
caaaagaaaccagACACGGAAATTGATCACGTGTTTTTTTCAACGCCCCC
TCTTCATGCTGGGACAAAGGAAACAAACAGTAGCGTTGCTTGGACTTTCA
AAGATCCGCTAACTTCAATACCAAGTTCGTCAAACCAAGTTTGTCTTTAC
CAGAAATATAAAACCTTCCAAGAATATATTTATCAGAATCCAACTGATTG
TCCAATAACGTTCACAGTAACTGGAATCAACGAATCTTACATACATCTAG
ATATTGATGAACATTTGGAAATCTCCGTCAATCTGACCATTGATATGATT
GTACCGTTACATGAAGATATAAGCGATCTTGATTGGCTCAAAACACAAGT
TTCAAATCATGAAATTGTATGCTTAAGAACACATCGTGAAAAATCGAGGA
GAGCTGAGAAAATCCGTCTTCAATTCCATCAATCTTTGGCAATATCAGGC
ATCAATGTTGTCACTATCAAATCAACTATTTATAATTCGAAATGTGGTGG
ACAAAGTCTAAAATTTCAGATTCTCAATGTTTGTCCTCCAGACAAGAAAG
TGATCTTCGAATATCCAAAATCCGTTCAACCAAACGATTTTGCTGACGAT
GATCAAAAACAAGACTCAGAAGGGATTATTCGGGTCTTTCATTTACCAAC
CAACTATCAACCACCTTCTTCTAAAGGTATTGGTATACCACAAACGCCGC
ATGTATATAATGCAGACCCGGCCAAACCAATGTTTCATAAGAAATATCTG
GCAAATCAAATCGATCCAGTcttcaaaaaatgtaaagatAAACGAAACAG
GTGATTCATATTCTCTATTTTgtattgtacacgttttttttttataagaa
cgtcaaaaaatttcgaagccttcggatgttcttagttttttggatttgaa
gcctaaaaatgttcttaaaatgttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCAAAGCCTtggtat
gttcttagaatgttcttaaatttttgggcctcgaagccttatgttcttat
atagtttgttcttataaaaaaaacgtgtactgtatTCAGTTGTGAAGGTG
GGTGTTGCTTGTGATCTTGTCTATAACacgttttctataagaacaaacta
tgttagaacataaggctttgcaGACAAAACATCtcatttcttaggaaaat
aaacaaaaatgctCAGAAagtggtaaaaataagaacatgttaagaacatt
tttatgcttaaaactaaagaaattaagaacatccgaaggattcaaaaatt
ttggatgttcttataaaaaatatgtacttgaagttatatatcaaatttaa
aatttggttAAAATGCATTTGTTTGTAATCAAATGGATAACTGCGCTCGT
AGTAGTAGAGCCGTCCCTCGATCGAAGACTGACTGTGAAGATTGTAATCT
TCCCTGGATCAAAAGATGTTTGCGTGAAAGTTCAGCCTACACTACTCACT
TTtgatgatttatttatttttcaggaCGATGTGTGGGTGTACAAAAGCTA
TGGAAATTTCTACGAagattagccaatcagattgcatcAAGAAAGTATAT
CGTCTTCTGTATCCAGAAAAGTTCATCCCTCGattacttttgcaaaaaaa
agctaaaaacaaTACTGCTTTCGATAAGCTGATGCGTTTATCTGAACTCA
ATGCCAGAACTGATTATACCCTAACCAATTCAGTTCGAGTCTCAAACGGA
GCCGAAGCGGTTAGTATGAAATCAAATACCACCATTGAACTTAAAGGATC
GGGATTATATCATTTTCAAGTGGACGTATTTGATAAAAACGTGTCGTATT
GTAATTTTGAAACGGAATTTCTAGTCTATGTTGACGGGACACCGCTTCCA
AAAGCCGTTGAATCGCTTGTCGAGGCTTTTACCGCTTTtgtttttggttt
tattttgttgGGCTTGTTCTTGTACCAATattacaaaaagtaaaaaaata
ggaaaaatcaCGCAAAAATGTTTTACTTCAGAAAGG

Coding sequence (CDS) from alignment at sc0000010:1052094..1061179+

>TCONS_00001399 ID=TCONS_00001399|Name=TCONS_00001399|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000010:1052094..1061179+ (Clytia hemisphaerica)
ATGGAGTTTTTTAATTACCAATCTGTTTATATGGTTTTCTTGGTTTCTTT
TTGGCAAGCTCATTTAACATTACAACTTGATTTTGAATGTACTTACAATG
GGACAACACTTGCTGACAACGTCAAAATCTTTCTCGACTTAGAGGAAAAT
GGAACATCAAATCTAGTGTGTATGAAAATGCAAAACCAAGGCTTCGTTGA
AGAGCTTAAAATGAGTGTTTCCAGCAGTGACACTGATTTGGTGACTCTAA
TCTTTAATTCCACATGGACTTCAGAAAAAGTCCTAAACATTTCTGACCAT
GATATATTTAAAACTAATAACCCACCGAGTTTCAACATGAAGATTTTGGT
TTGTGAAATATATTACGTCGATGCTTTACATGAAAATGTTaccataataa
aatttttggctGTTACAGCACATAGATCATTCAGTCAATATCAGAGGACT
TTTGGTTTGGATGATTCAAAGCATGTTGTAGCTGAAAGTCCATGTTCTAG
CATTGTTTCTTACTGGATACCAAAGATGTTATCGGAAACGAAAAACTCAC
TTCACTTGAAGATCAGCAAAGAAACACTTCTAATGATACCCATTCTTATG
AGTGAAAGCCAAAAGATTTCAGAGAATTCAACGGTAACCCGTTTCGTTGT
TATGAATAATCACATCATTCTGGTAGTTGATAACCAGTGGCTATGGAAAG
GAACATTAGAACTATCTGGGGATGTGAGAATTACCAAAGCATCATCAAAT
CGAGTCCAAGTTCATTTGCTAACAACAACGATTCACTGTCCAATCACTGA
TACCCCTGGAGTCGAAGGCTCTGAAACAGCGCTCTTGGTACATCAAATTG
GAAATGGCACCTTCCTCAACATTTACGCGCCGCCCATTGAATCAACGCCC
CTTTACATTGTGACTTTGACAAATATCACTGGTGAAGATATCATAGATGT
GAAATATGATTATGGTAAAAGACAAGTTGTCGTACTATTGGTTACAAATA
CAGTACACGCATTCTCGTTATCTGGAACACTGCAATGTGCGCCGATAATT
TTGAAGGATACACATATTAAAAACCAATCAAGACTTCTCGTAAAGTGCAA
CCTTCTGTTGATCGTCACAAATGAAATAGTTGTTTGGACATCAACAAATG
GTGGATGCAATTGGAAACGACCTATACAATGGAACAACATCCTCCATGCA
GACTTTGAGTTCCATTCTGCCGATACATTGAAATTTACATCTAACATAAC
ATCAAGTTACGGAACTCCGCTAGAAAGCTATCGGGATTATGATATTTTAT
GGACCAAAATTGGTTTCTTACGTCCACAAGCAGCATTGAATAACTCTAAT
TACATGTTGCTCCTCAATGACAAGATTCCGGAAAGCAATAACCCTTATCT
TGATTTAGACATTTTTGCCGTAACAGAAACCGCAGAAGGATTCCAGTTAG
AGTTTACGCCAAATGAGACGAAGTTTCCTGAAATTTGGATTGGTTCCTTG
GTAAAGCTTGGTGACTACTCATGTCGCGTCACGGCTGTTTTCAACGCTAC
TGTCGAGATTTATTGCTACAATAGTAGTTTAACATTCACAAACATTATCG
ACTTTATCCAGCAACGACGCTGGTTTAGTGTCGATTTCTTTTATGCAAGA
AAAGTAGAATGTCACCTTAGTTTTAATGTGAATACCACAACCattgtttt
tcaaaagaaaccagACACGGAAATTGATCACGTGTTTTTTTCAACGCCCC
CTCTTCATGCTGGGACAAAGGAAACAAACAGTAGCGTTGCTTGGACTTTC
AAAGATCCGCTAACTTCAATACCAAGTTCGTCAAACCAAGTTTGTCTTTA
CCAGAAATATAAAACCTTCCAAGAATATATTTATCAGAATCCAACTGATT
GTCCAATAACGTTCACAGTAACTGGAATCAACGAATCTTACATACATCTA
GATATTGATGAACATTTGGAAATCTCCGTCAATCTGACCATTGATATGAT
TGTACCGTTACATGAAGATATAAGCGATCTTGATTGGCTCAAAACACAAG
TTTCAAATCATGAAATTGTATGCTTAAGAACACATCGTGAAAAATCGAGG
AGAGCTGAGAAAATCCGTCTTCAATTCCATCAATCTTTGGCAATATCAGG
CATCAATGTTGTCACTATCAAATCAACTATTTATAATTCGAAATGTGGTG
GACAAAGTCTAAAATTTCAGATTCTCAATGTTTGTCCTCCAGACAAGAAA
GTGATCTTCGAATATCCAAAATCCGTTCAACCAAACGATTTTGCTGACGA
TGATCAAAAACAAGACTCAGAAGGGATTATTCGGGTCTTTCATTTACCAA
CCAACTATCAACCACCTTCTTCTAAAGGTATTGGTATACCACAAACGCCG
CATGTATATAATGCAGACCCGGCCAAACCAATGTTTCATAAGAAATATCT
GGCAAATCAAATCGATCCAGTcttcaaaaaatgtaaagatAAACGAAACA
GgaCGATGTGTGGGTGTACAAAAGCTATGGAAATTTCTACGAagattagc
caatcagattgcatcAAGAAAGTATATCGTCTTCTGTATCCAGAAAAGTT
CATCCCTCGattacttttgcaaaaaaaagctaaaaacaaTACTGCTTTCG
ATAAGCTGATGCGTTTATCTGAACTCAATGCCAGAACTGATTATACCCTA
ACCAATTCAGTTCGAGTCTCAAACGGAGCCGAAGCGGTTAGTATGAAATC
AAATACCACCATTGAACTTAAAGGATCGGGATTATATCATTTTCAAGTGG
ACGTATTTGATAAAAACGTGTCGTATTGTAATTTTGAAACGGAATTTCTA
GTCTATGTTGACGGGACACCGCTTCCAAAAGCCGTTGAATCGCTTGTCGA
GGCTTTTACCGCTTTtgtttttggttttattttgttgGGCTTGTTCTTGT
ACCAATattacaaaaagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000741XLOC_000741Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001399-proteinTCONS_00001399-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001399-exon-sc0000010-1491911889:1052094..1052753TCONS_00001399-exon-sc0000010-1491911889:1052094..1052753Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1510915933:1052094..1052753TCONS_00001399-exon-sc0000010-1510915933:1052094..1052753Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1575043694:1052094..1052753TCONS_00001399-exon-sc0000010-1575043694:1052094..1052753Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1491911889:1053985..1054157TCONS_00001399-exon-sc0000010-1491911889:1053985..1054157Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1510915933:1053985..1054157TCONS_00001399-exon-sc0000010-1510915933:1053985..1054157Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1575043694:1053985..1054157TCONS_00001399-exon-sc0000010-1575043694:1053985..1054157Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1491911889:1055338..1055607TCONS_00001399-exon-sc0000010-1491911889:1055338..1055607Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1510915933:1055338..1055607TCONS_00001399-exon-sc0000010-1510915933:1055338..1055607Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1575043694:1055338..1055607TCONS_00001399-exon-sc0000010-1575043694:1055338..1055607Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1491911889:1057503..1057634TCONS_00001399-exon-sc0000010-1491911889:1057503..1057634Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1510915933:1057503..1057634TCONS_00001399-exon-sc0000010-1510915933:1057503..1057634Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1575043694:1057503..1057634TCONS_00001399-exon-sc0000010-1575043694:1057503..1057634Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1491911889:1058415..1059793TCONS_00001399-exon-sc0000010-1491911889:1058415..1059793Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1510915933:1058415..1059793TCONS_00001399-exon-sc0000010-1510915933:1058415..1059793Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1575043694:1058415..1059793TCONS_00001399-exon-sc0000010-1575043694:1058415..1059793Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1491911889:1060668..1061179TCONS_00001399-exon-sc0000010-1491911889:1060668..1061179Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1510915933:1060668..1061179TCONS_00001399-exon-sc0000010-1510915933:1060668..1061179Clytia hemisphaericaexon
TCONS_00001399-exon-sc0000010-1575043694:1060668..1061179TCONS_00001399-exon-sc0000010-1575043694:1060668..1061179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1052094..1061179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0121624	0.0118603	0.0137709	0.040418	0.0164017	0.0129608	0.0156367	0.0439167	0.0204981	0.0507803	0	0.0081001	0	0	0	0.0370571	0.155215	0.196523	0	0	0.141112	0.240903	0.0139452	0.0380346	13.2149	12.9594	0.0333541	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028748CATSPERB
Vocabulary: Cellular Component
TermDefinition
GO:0036128CatSper complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0036128 CatSper complex
Blast
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BLAST of TCONS_00001399 vs. Swiss-Prot (Human)
Match: CTSRB (Cation channel sperm-associated protein subunit beta OS=Homo sapiens GN=CATSPERB PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 3.139e-25
Identity = 72/213 (33.80%), Postives = 112/213 (52.58%), Query Frame = 3 
Query: 2424 QDSEGIIRVFHLPTNYQPPSSKGIGIPQTPHVYNADPAKPMFHKKYLANQIDPVFKKCKDKRNRTMCGCTKAMEISTKISQSDCIKKVYRLLYPEKFIPRLL--LQKKAKNNTAFDKLMRLSELNARTDYTLTNSV-----RVSNGAE-----AVSMKSNTTIELKGSGLYHFQVDVFDKNVSYCNFETEFLVYVDGTPLPKAVESLVEAFTA 3026
            +DS+G   +  LP NY+PPS+ GI IP T + Y+ADP+KP+    +  ++    FK+C +   R  C CTK  + S  ++ SDC +KV R  +P    P  L  + +  +       L+ ++E+N R ++ L ++V     R+    E     AV   S   + +KGS L+HF+V V    V++CN   EF +YVD  PLP    +L+   TA
Sbjct:  854 KDSQGFNLIKTLPINYRPPSNMGIAIPLTDNFYHADPSKPIPRNMFHMSKKTGKFKQCANVSTREECNCTKDQKFSHAVAFSDCREKVPRFKFPITQYPVSLEIINEDGRVPLQSPYLVTVTEVNMRHNWKLKHTVPENIKRMKQLVEPILGAAVYNPSGLNLSIKGSELFHFRVTVIS-GVTFCNLIEEFQIYVDEAPLPFPGHTLIAVATA 1065
The following BLAST results are available for this feature:
BLAST of TCONS_00001399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTSRB3.139e-2533.80Cation channel sperm-associated protein subunit be... [more]
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