TCONS_00001469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001469
Unique NameTCONS_00001469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001469 ID=TCONS_00001469|Name=TCONS_00001469|organism=Clytia hemisphaerica|type=transcript|length=2220bp
TTAATATTTTACATATTTCGTATAAAGTTTACGTGCCATCAAAAATATAT
CAACAGTGAAGAAGTGCGGTGATCTTATATGGTAAAGTAAACAACGGTGT
TACGGAATCGGTAGGAATTGACACTCCTTCTTCGAGGCTtggtatgaaaa
aaatttgaagtaaaagaAACATTTATGCCATCAACCTTCCCCTTTTGATT
TGAGCTTTGACGACACAAGTgcttctttgatatttttttgagaattttct
ttCTAGAAGAATTAAATTTTCGATTTAAAGATGACTTCAGAATCCAACGA
ACAAACTACTCAAGAAGTATCAACTTCTGCTTCAGAGACACCAAAGCAGG
AGACTCCCGAAGTTGAAGTAGCTCCAGCCGCACAGGCAGCGCCGCAACCA
GAAGTCCCAGCCGCAGAAGTAGCCCTACAACAAGAAGCTCCAGTCCCACA
AGCAGAGGCTTCTGTCGCTGAAGCAGCTCCACAACCGGAAGCTCCAGCAG
CAGAAGCAGCCCCACAACCAAAAGCTCCAGCCGCAGAAGCAGCCCTTCAA
GCAGAGGCTCCAGTTACAGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGC
AGAAGCAGCCCCTCAACCAGAAGCCCCAGTCACAGAAGCAGTCCCGCAAC
CAGAGGCTCCAGTCGCAGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCA
GAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGTCCCACAACC
AGAAGCTCTAGCTCCACAAGCAGGGGCTCCTGTCGCTGAAGCAGCCCCAC
AACCAGAAGCTCCTGTCGCTGAAGCAGCCCCACAACCAGAGGCTCCCATC
GCAGAAGCAGTTCCACAAGCAGAGGCTCCAGTTGTTGAAGCAGCCCCACA
ACCAGAGGCTCCAGTCGCAGAAACAGCCCCACAATCAGAAGCTCCAGCCG
CAGAAGCAGCCCTGGAAGCAGAAGCTCCAGTTGCAGAAGCAGTCCCTCAA
CCAGAAGCTCCAGTTGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTTGC
AGAAGGAGTCTCTCAACCAGAAGCTCCAGTTGCAGAAGCAGCCCCACAAC
CAGAGGCTCCAGTTCCAGAAGTTCCAGTCGCAGAAGCAGCCCCACAACCG
GAGGCTCCTGCTGCAGAAGTAGCCCCACAACCAGAATCTCCAGTCCCACA
ATCAGAGGCTCCTGTCGCTGAAGCCATCCCACAAGCAGAGGCCCCAGCCG
CAGAAGCAGCCCCACAACCAGAAACTCCTGCTCAACAGCCAGAAGCTCCA
GCCGTAGAAGCAGCCCCCCAACCGGAAGCTCCAGCTGCAGAAGTATCCCA
ACCTTCAGAGCCAGTCGCATGACTTTGTGTGTGTTTATAGTATGATGTAT
GAGTATGATTAAATGAATACCCCTTAGTGCCTTAGCCGTTTTTCCATATA
ACCTTAAACCGTATTTGTTTTCTTAATGACTTTTAAACTTCTTTTGAATG
AATATATTGATGTATGAGGTACGGGGGTATCATTTGATTGCTTGTATATT
CTTTGGAAGGCTGCTTGGATATCGGTGGAaaagagaaaattcaaaaacgC
TCCTCATCAATACTTTTGAATTCACCGCATCGACCTAAGGTTCCTCCTTG
ATGCTGGCAAGGATTACTAAGCAACATTGGTTATTGTGAATTCAGTTCCA
ATACAAATAACGTTGACAGCTCATAGAGTTGAAGAATATAATTTCTTGAT
AAATGGAGAATCTGTGAGAAATCATACAATAAGAAGCCATCCAAAGACGA
TAAAGTGAGCAACAGTTACACTTTATTGGGAAAAATAGTCGAATCGATAA
TGAATGACATTTATAAGGGATTTATTTTTGAATCAGTTACCTGACTGAGA
AAAACCTTGGATCTTTTTCCTGAAGAGGTATTGTTTATTTGAATAACAAG
TTTTTCGGCTTTGGTCATGGTAAAAAAGTAGTTTTTCTATTTCGCACATT
CTTTGTAATTATTGTTAAATAGATTATTTATTTAAGAATATCAATTGTGA
CTTTTCTCtgtcataaaaatatttaatgcctaattttcatcaaatcaaaa
aagtgaagaaacaGTTAAAGTCCAATGCTGTTTTCCATCTTTTTGGCATT
CCAAATAGATTGATTGATCTGTTGAACTGGCATTTTGGTACACGTAAcgt
aagaaaattttgaaaacttc
Run BLAST on NCBI

protein sequence of TCONS_00001469-protein

>TCONS_00001469-protein ID=TCONS_00001469-protein|Name=TCONS_00001469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MTSESNEQTTQEVSTSASETPKQETPEVEVAPAAQAAPQPEVPAAEVALQ
QEAPVPQAEASVAEAAPQPEAPAAEAAPQPKAPAAEAALQAEAPVTEAVP
QPEAPVAEAAPQPEAPVTEAVPQPEAPVAEAVPQPEAPVAEAVPQPEAPV
AEAVPQPEALAPQAGAPVAEAAPQPEAPVAEAAPQPEAPIAEAVPQAEAP
VVEAAPQPEAPVAETAPQSEAPAAEAALEAEAPVAEAVPQPEAPVVEAAP
QPEAPVAEGVSQPEAPVAEAAPQPEAPVPEVPVAEAAPQPEAPAAEVAPQ
PESPVPQSEAPVAEAIPQAEAPAAEAAPQPETPAQQPEAPAVEAAPQPEA
PAAEVSQPSEPVA
Run BLAST on NCBI

transcript from alignment at sc0000010:409793..412860-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001469 ID=TCONS_00001469|Name=TCONS_00001469|organism=Clytia hemisphaerica|type=transcript|length=3068bp|location=Sequence derived from alignment at sc0000010:409793..412860- (Clytia hemisphaerica)
TTAATATTTTACATATTTCGTATAAAGTTTACGTGCCATCAAAAATATAT
CAACAGTGAAGAAGTGCGGTGATCTTATATGGTAAAGTAAACAACGGTGT
TACGGAATCGGTAGGAATTGACACTCCTTCTTCGAGGCTTGGTATGAAAA
AAATTTGAAGTAAAAGAAACATTTATGCCATCAACCTTCCCCTTTTGATT
TGAGCTTTGACGACACAAGTGCTTCTTTGATATTTTTTTGAGAATTTTCT
TTCTAGAAGAATTAAATTTTCGATTTAAAGATGACTTCAGGTAAGTTTGG
AGAATAATATTACCTTGAGATTAAAAAAACAACACCTATTTTATTGAATA
AGAAAGAAACAGGTTGCAGAATATAGAATTAAAAAGTAAAATCAACTATC
TGTTTTTTAATCTGTTTTAGTATGCATGACCATTGAAAAACATCAATCCT
TCTAGGGTGAAAAAATTAGGAGTAATATGGTATCTTGTAAAAGACGTCAT
TTTTTTAATGTCTCTCTTTTTTAGAATCCAACGAACAAACTACTCAAGAA
GTATCAACTTCTGCTTCAGAGACACCAAAGCAGGAGACTCCCGAAGTTGA
AGTAGCTCCAGCCGCACAGGCAGCGCCGCAACCAGAAGTCCCAGCCGCAG
AAGTAGCCCTACAACAAGAAGCTCCAGTCCCACAAGCAGAGGCTTCTGTC
GCTGAAGCAGCTCCACAACCGGAAGCTCCAGCAGCAGAAGCAGCCCCACA
ACCAAAAGCTCCAGCCGCAGAAGCAGCCCTTCAAGCAGAGGCTCCAGTTA
CAGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGCCCCTCAA
CCAGAAGCCCCAGTCACAGAAGCAGTCCCGCAACCAGAGGCTCCAGTCGC
AGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGTCCCTCAAC
CAGAAGCTCCAGTCGCAGAAGCAGTCCCACAACCAGAAGCTCTAGCTCCA
CAAGCAGGGGCTCCTGTCGCTGAAGCAGCCCCACAACCAGAAGCTCCTGT
CGCTGAAGCAGCCCCACAACCAGAGGCTGCCATCGCAGAAGCAGTTCCAC
AAGCAGATGCTCCAGTTGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTC
GCAGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAGCAGCCCCACA
ATCAGAAGCTCCTGTCGCTGAAGCAGCCCCTCAACCAGAGGCTCCCATCG
CAGAAGCAGTTCCACAAGCAGAGGCTCCAGTTGTTGAAGCAGCCCCACAA
CCAGAGGCTCCAGTCGCAGAAACAGCCCCACAATCAGAAGCTCCAGCCGC
AGAAGCAGCCCTGGAAGCAGAAGCTCCAGTTGCAGAAGCAGTCCCTCAAC
CAGAAGCTCAAGTCCCACAAGCAGAAGCTCTTGTTGCTGAAGCAGCCCCA
CAGCCAGAGGCTCCCATTGCAGAAGCAGGTCCACAAGCACAGGCTCCAGT
TGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAGCAGCCCAAC
AACCAGAGGCTCCAGTTGCAGAAGGAGTCCCTCAACTAGAAGTACCAGTT
GCAGAAGCAGCCCCACAACCAGAGGCTCCAGTTGCAGAAGGAGTCTCTCA
ACCAGAAGCTCCAGTTGCAGAAGCAGCCCCACAACCAGAGGCTCCAGTTC
CAGAAGTTCCAGTCGCAGAAGCAGCCCCACAACCGGAGGCTCCTGCTGCA
GAAGTAGCCCCACAACCAGAATCTCCAGTCCCACAATCAGAGGCTCCTGT
CGCTGAAGCCATCCCACAAGCAGAGGCCCCAGCCGCAGAAGCAGCCCCAC
AACCAGAAACTCCTGCTCAACAGCCAGAAGCTCCAGCCGTAGAAGCAGCC
CCCCAACCGGAAGCTCCAGCTGCAGAAGTATCCCAACCTTCAGAGCCAGT
CGCATGACTTTGTGTGTGTTTATAGTATGATGTATGAGTATGATTAAATG
AATACCCCTTAGTGCCTTAGCCGTTTTTCCATATAACCTTAAACCGTATT
TGTTTTCTTAATGACTTTTAAACTTCTTTTGAATGAATATATTGATGTAT
GAGGTACGGGGGTATCATTTGATTCCTTGTATATTCTTTGGAANTCCAGC
CGTAGAAGCAGCCCCTCAACCGGAAGCTCCAGCTGCAGAAGTATCCCAAC
CTTCAGAGCCAGTCGCATGACTTTGTGTGTGTTTATAGTATGATGTATGA
GTATGATTAAATGAATACCCCTTAGTGCCTTAGCCGTTTTTCCATATAAC
CTTAAACCGTATTTGTTTTCTTAATGACTTTTAAACTTCTTTTGAATGAA
TATATTGATGTATGAGGTACGGGGGTATCATTTGATTGCTTGTATATTCT
TTGGAAGGCTGCTTGGATATCGGTGGAAAAGAGAAAATTCAAAAACGCTC
CTCATCAATACTTTTGAATTCACCGCATCGACCTAAGGTTCCTCCTTGAT
GCTGGCAAGGATTACTAAGCAACATTGGTTATTGTGAATTCAGTTCCAAT
ACAAATAACGTTGACAGCTCATAGAGTTGAAGAATATAATTTCTTGATAA
ATGGAGAATCTGTGAGAAATCATACAATAAGAAGCCATCCAAAGACGATA
AAGTGAGCAACAGTTACACTTTATTGGGAAAAATAGTCGAATCGATAATG
AATGACATTTATAAGGGATTTATTTTTGAATCAGTTACCTGACTGAGAAA
AACCTTGGATCTTTTTCCTGAAGAGGTATTGTTTATTTGAATAACAAGTT
TTTCGGCTTTGGTCATGGTAAAAAAGTAGTTTTTCTATTTCGCACATTCT
TTGTAATTATTGTTAAATAGATTATTTATTTAAGAATATCAATTGTGACT
TTTCTCTGTCATAAAAATATTTAATGCCTAATTTTCATCAAATCAAAAAA
GTGAAGAAACAGTTAAAGTCCAATGCTGTTTTCCATCTTTTTGGCATTCC
AAATAGATTGATTGATCTGTTGAACTGGCATTTTGGTACACGTAACGTAA
GAAAATTTTGAAAACTTC

Coding sequence (CDS) from alignment at sc0000010:409793..412860-

>TCONS_00001469 ID=TCONS_00001469|Name=TCONS_00001469|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000010:409793..412860- (Clytia hemisphaerica)
ATGACTTCAGAATCCAACGAACAAACTACTCAAGAAGTATCAACTTCTGC
TTCAGAGACACCAAAGCAGGAGACTCCCGAAGTTGAAGTAGCTCCAGCCG
CACAGGCAGCGCCGCAACCAGAAGTCCCAGCCGCAGAAGTAGCCCTACAA
CAAGAAGCTCCAGTCCCACAAGCAGAGGCTTCTGTCGCTGAAGCAGCTCC
ACAACCGGAAGCTCCAGCAGCAGAAGCAGCCCCACAACCAAAAGCTCCAG
CCGCAGAAGCAGCCCTTCAAGCAGAGGCTCCAGTTACAGAAGCAGTCCCT
CAACCAGAAGCTCCAGTCGCAGAAGCAGCCCCTCAACCAGAAGCCCCAGT
CACAGAAGCAGTCCCGCAACCAGAGGCTCCAGTCGCAGAAGCAGTCCCTC
AACCAGAAGCTCCAGTCGCAGAAGCAGTCCCTCAACCAGAAGCTCCAGTC
GCAGAAGCAGTCCCACAACCAGAAGCTCTAGCTCCACAAGCAGGGGCTCC
TGTCGCTGAAGCAGCCCCACAACCAGAAGCTCCTGTCGCTGAAGCAGCCC
CACAACCAGAGGCTCCCATCGCAGAAGCAGTTCCACAAGCAGAGGCTCCA
GTTGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAACAGCCCC
ACAATCAGAAGCTCCAGCCGCAGAAGCAGCCCTGGAAGCAGAAGCTCCAG
TTGCAGAAGCAGTCCCTCAACCAGAAGCTCCAGTTGTTGAAGCAGCCCCA
CAACCAGAGGCTCCAGTTGCAGAAGGAGTCTCTCAACCAGAAGCTCCAGT
TGCAGAAGCAGCCCCACAACCAGAGGCTCCAGTTCCAGAAGTTCCAGTCG
CAGAAGCAGCCCCACAACCGGAGGCTCCTGCTGCAGAAGTAGCCCCACAA
CCAGAATCTCCAGTCCCACAATCAGAGGCTCCTGTCGCTGAAGCCATCCC
ACAAGCAGAGGCCCCAGCCGCAGAAGCAGCCCCACAACCAGAAACTCCTG
CTCAACAGCCAGAAGCTCCAGCCGTAGAAGCAGCCCCCCAACCGGAAGCT
CCAGCTGCAGAAGTATCCCAACCTTCAGAGCCAGTCGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000751XLOC_000751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001469-exon-sc0000010-1575043694:412571..412860TCONS_00001469-exon-sc0000010-1575043694:412571..412860Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1575043694:411786..412336TCONS_00001469-exon-sc0000010-1575043694:411786..412336Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1575043694:411456..411620TCONS_00001469-exon-sc0000010-1575043694:411456..411620Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1575043694:411336..411368TCONS_00001469-exon-sc0000010-1575043694:411336..411368Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1575043694:410758..411236TCONS_00001469-exon-sc0000010-1575043694:410758..411236Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1575043694:409793..410494TCONS_00001469-exon-sc0000010-1575043694:409793..410494Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1510915933:412571..412860TCONS_00001469-exon-sc0000010-1510915933:412571..412860Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1510915933:411786..412336TCONS_00001469-exon-sc0000010-1510915933:411786..412336Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1510915933:411456..411620TCONS_00001469-exon-sc0000010-1510915933:411456..411620Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1510915933:411336..411368TCONS_00001469-exon-sc0000010-1510915933:411336..411368Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1510915933:410758..411236TCONS_00001469-exon-sc0000010-1510915933:410758..411236Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1510915933:409793..410494TCONS_00001469-exon-sc0000010-1510915933:409793..410494Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1491911889:412571..412860TCONS_00001469-exon-sc0000010-1491911889:412571..412860Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1491911889:411786..412336TCONS_00001469-exon-sc0000010-1491911889:411786..412336Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1491911889:411456..411620TCONS_00001469-exon-sc0000010-1491911889:411456..411620Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1491911889:411336..411368TCONS_00001469-exon-sc0000010-1491911889:411336..411368Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1491911889:410758..411236TCONS_00001469-exon-sc0000010-1491911889:410758..411236Clytia hemisphaericaexon
TCONS_00001469-exon-sc0000010-1491911889:409793..410494TCONS_00001469-exon-sc0000010-1491911889:409793..410494Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001469-proteinTCONS_00001469-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:409793..412860 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.15877	0.0158918	0	0.0637677	0	0.0915895	0	0	0	0	70.3961	90.9883	0	0.184188	99.1735	107.214	0.392995	0.605305	0	0.193852	0	0	0.0195811	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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