TCONS_00001504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001504
Unique NameTCONS_00001504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001504 ID=TCONS_00001504|Name=TCONS_00001504|organism=Clytia hemisphaerica|type=transcript|length=5900bp
CTATAAAATTGCGAtcatttaaattattttaagtagaccaaaaaaaaacg
aaatgaaaaatgaataccATATCCATCGAAGACATTTGTAATGAAGCTGA
AGGAGTCATTCAACAAGAAATAATTACTGATAGTATTGATGGAAATCAGG
ATATCATAACAGTGATTCAAGTGAACGAGGAAGATGCCTCTCAAGAAACA
ATATCTTCCACACAAACTGATATTGGAGATTTGAGTGCACTTGCTACTGT
TGCAGAATATGTACCATTGTTAAAAGATATTAATAATATTGCAGGGAATC
AGTGTTATGACATTTCCGCAGCAAATATGGAGAATGAATCAACTGTTTTT
GATGATCTTGATAATGACTCCAAGACTGAATCATTGGAAGATTCAATGGT
TCTTTCGGAAGAATCAGCAAAGGATATGTCAGTTATGGTGACCCCTGGTG
AATATTTTGTGACAACAACTTTTGATGAAATGTTACAAATTTTACAAGAT
TATTTTGATAGAACTGCAACAAAATTTGTTGTTCAGAAACGGACCAAAGA
CTTTGGATTGAAAGATGAGAATTTTGATTTGATGAAGCATCGCATACAAT
GGGAGGATACCAAGACTCAAAGTAACCAGTCTGAATATAGTTTTCTTCCA
TTTGATGGTGTACCGCATATCACTGTTGGGCACTATGTCATGCATTGCCA
GTTCGGTTCTGATCATAACGCTCTacagaaggaaaagaaaaaacttctAA
GGGAAAAAGACGCAAAGAAAACTAGAAACGTAAAGAATCCTACTAAAAAG
TGTGGATGTCCTGCTAAAATAAATATCAAACAAGTTATCAAGTTTCCAGA
ATTTAAGGTTAACAAGAAGACAGAGAGACGAAAACGAAGTTGTGCTGGAC
TCCTCAAAGAACAGTATCAAAGGGATAAATCGAAAATAACTACTGAAATG
TTCTTTATGGGTCGTCTACCTGTGATGGAAGAGCACAAATTCCATGAGTT
ACTTGAGGGAAGAGAATTTGCAAAAGAAAACGTTCATCGAGATCTCATTA
TAAAAGCACAggaattgtattttttgaacCGATCGATAACAGACATTGCA
GCTGAACTACAAAGCTACGTTGTCAACGAATTATTTTACAAACAAGAGCC
ACCTGATAAAAGCCGAAGAAAGTATAACCCAACTATGAAAGATTTGAGAA
ACTATATTGGCAAAATAAGACAGTTAGAACGCTTCAATAAGGACGATATC
ATAAGGATGGACTCTCTCATCTCATCCATTCATACGGAGGAGAGAAATAC
TAAAGTACTGTTTAACTCAGAACAAGAAAACATTCTTGACTTGCAGGACA
CCTCTTCGGAAGATGAGAATACACAACCAAATCAATTGGAATGTTTATCT
CCCAGTCTTAACAAGAACAATCATCACATAttatcttttctattttgtta
tcAAACACAAGAACATCAAAGACTGTTGAAACGATATGGAGCTACTGCAT
TCGTAACAGAAGTTCATNATCAAAGACTTTTGAAACGATATGGAGCTACT
GCATTCCTAACAGAAGTTCATCCTAGTCTGACAGTCAAAAGAGCGTTAAC
TTTTAAATTCTTCGTCGTCTTTGTACAAACTAATGTTGACTTTCAACCTG
TCGGGTTTATCGTGTTCAGTAAACGTCGCAATGATGGTTTGAAAGATGGC
TTTTCTACCTTGAAAAATTGGAATTCATCATGGTCACCTAAATACCTGTT
TATTGATTCCACTGAAGAAATGATCAACGCCTCAACTAAAGTCTTTCCAG
ATGTGCCCTATTTCCTGAACATTCACTCATGTGAAAGTCAATGGTTGGAT
TACCTCTTAACACCCTCCAACGAGTTGAGTGTATTTGATGATGACATCAT
GTTGTTTTTGAGGAACATGGCTTCCTCCTTTTCCGAGAATTCTCTTTCGT
TGGCTGCTTCTTCTCTTGAGGAAAGTAGTGTTTGGCTAAAATCCATCAAT
TTGAGGACATGGTTTCAATCAGAATGGCTACCAATTGCAAAGAAATGGGT
TGGTGGATATAGACCAGAAGATCTCTTCGTTTTCGATCATATCAAATACG
ATTTTACGTCTTGTTTGCAAGTGTTTGTGGACTTGCTGAGTGATTCCACC
AAAGGATGTTCTGGTTTTGTTGGTATGGTGGAAAGTCTCCATCGCATCAC
CGTCAACGAGGAATATGCAAAATACATCATACGTAACCGAGAACAAAATG
ATCTTGGCAACAAACTAAGGGTAGAAGAACATCTCACCGACGGCATGATT
GGCATCCCATCATTCATTGCGAACCATTTGTATTCAACTTGCAAGGAAGC
TTCTGAACAACAATTTGAAGTGGTAGAAGGTACACAGGTTGGTGTGTTTC
ATATCAATACTGATGCTTCTGAACCAGAGGTTGACAATGCTGCTGAAGAA
ACCAACGCTGAATCCGAACCATTGGAGAACGTAGTAGCTCCTAAACCAGA
GAATGAAATTATCTTAGAACAAGACCAAGTAATGACTGCAGATTCAGAAC
AACTCCAACCACAAACAGAAAACGGAATCACAACTGAAGAATCTAACATT
CTGTCAAACGTTCTTGAGAATTGTTTACTACAAACCATGGAAATACCCAA
TATGGAGGTCCTTCCTAATAGCTCGTCAACGGAGAACCCAAGCATGATCG
CAGAAACAGAAGTGGTTGATTCTGACCCATCAGAATTCATTGCATCGAAT
GAGATTACTTTAGAATCTAATGTTGAGGTAAAAGAGACTTCGGTACAACA
AGTGGTTTTTGCACAACAGATGCCTGAAGAAACCACTTTGTCAGAACAAG
AGGAGATGGTCAATAGTCTCCATCCTCCTCATGTAGGAAAGCAAGAAACG
ATTGTACAGGATGCTAAAAAGCTGGGTACATCTACCCCTAAACCAGCAGA
GAAAGCACTGCCTAATGATATAGAGCTGGCCTCGTTGGAACAGATTGACG
ATGAGAATTCGGTAGAGGAACCAAACAAAGAAGAGGAGAGTAAGGGATTA
TCAGAAAGAGAAGATCAACAAATTGACGAAGCAGTGAATAACATGAACGA
ATACACTGTCTCTTTTGGTGACTCCACCTCCTACCCATTCTGCACTTGTT
CCCACTGGCAACAACATAAACTACCATGTCATCATATGTTTCATGTTTTC
CAAGCAGTGCCGGGATGGGGATTCGATATGTTGAGTCCTGTATACCGAAT
GAACAATAAACTTCATTTCGATCATTCATGCATTGAAACtcatcaaaaat
ccaaaatctcACATTTGTTCAATAAAGCAGTCCAAACAAGCGAAGAGTTA
CCCTGCACTGTACAAACACCACAGAATCGAgatatttttcaaccaatcag
ttcTCTTCAGATGACTGGTCAACTTCATAGACAAGTATCCGACTTACTGT
TTCATCTGaacaaatcttcatttttatttaaagatatCGTGACGTACAAG
CGATTACGTAGTCAACTTACTGACCTCTTTAAAGCCTCTCACGTGACCCT
GACTAATGATAATCCCTCAAAACCACCAAACGGACCAACCTNTTATCTTA
GAACAAGACCAAGTAATGACTGCAGATTCAGAACAACTCCAACCACAAAC
AGAAAACGGAATCACAACTGAAGAATCTAACATTCTGTCAAACGTTCTTG
AGAATTGTTTACTACAAACCATGGGAATACCCAATATGGAGGTCCTTCCT
AATAGCTCGTCAACGGAGAACCCAAGCATGATCGCAGAAACAAAAGTGGT
TGATTCTGACCCATCAGAATTCATTGCATCGAATGAGATTACTTTAGAAT
CTAATGTTGAGGTAGAAGAGACTTCGGTACAACAAGTGGTTTTTGCACAA
CAGATGCCTGAAGAAACCACTTTGTCAGAACAAGAAGATACGGTCAATAG
TCTCCATCCTCCTCATGTAGGAAAGCAAGAAACGATTGTACAGGATGATA
CATCTACCCCTAAACCAGTAGAGAAAGCACTGCCTAATGATATAGAGCTG
GCCTCGTTGGAACAGATTGACGATGAGAATTCGGTAGAGGAACCAAACAA
AGAAGAGGAGAGTAAGGGATTATCAGAAAGAGAAGATCAACAAATTGACG
AAGCAGTGAATAACATGAACGAATACACTGTCTCTTTTGGTGACTCCACC
TCCTACCCATTCTGCACTTGTTCCCACTGGCAACAACATAAACTACCATG
TCATCATATGTTTCATGTTTTCCAAGCAGTGCCGGGATGGGGATTCGATA
TGTTGAGTCCTGTATACCGAATGAACAATAAACTTCATTTCGATCATTCA
TGCATTGAAACtcatcaaaaatccaaaatctcACATTTGTTCAATAAAGC
AGTCCAAACAAGCGAAGAGTTACCCTGCACTGTACAAACACCACAGAATC
GAgatatttttcaaccaatcagttcTCTTCAGATGACTGGTCAACTTCAT
AGACAAGTATCCGACTTACTGTTTCATCTGaacaaatcttcatttttatt
taaagatatCGTGACGTACAAGCGATTACGTAGTCAACTTACTGACCTCT
TTAAAGCCTCTCACGTGACCCTGACTAATGATAATCCCTCAAAACCACCA
AACGGACCAACCTACAATAACAGTGTTCTCACAACTTTAAAGAACGCAGG
TTCGATACAAAGAGCTCAAAATATTGACCctaagaaagtgaaagtgaaag
tcgCACCCAGGGCAACGTCCTTGAACTTGACACAAGGAAATGCGGTCAAT
ATCGAAGAGATTAATCGGCTTTTAGCGGCTGTTTCGCAACTTGTTTCTGA
AGATGAAATCATCAAGGCTAATGAAGCCAACGCTATTATTGTCAATAACA
GTGATATTCAAGAAACTTTTCAGGAAAGTTCGCCCTCTGAAAGCCTTACT
AATACAAATGATGAGACTCAATCAAAGCCTGTCATCGCCAGACAGTCGCC
AGACAAATCAGCAAGTCCCATTTCCACCGACAATAATGATACTTTAATCT
CCCTCTCCGAAACACCCACCACTATCGATTCAATAATAAACTTACAACCT
CTGATACACCCCGGTATCAAGCGTGACACTTCCCAGATTTTAACACAAAC
AGAAAATGACAAGATGGACGACCAGTCACTCAATAATAAAGTCTCCATAT
TAGAATATTTACCACTGCTGAAAAAGAAATGTGTTACACCAGAGGACATT
GCAAATGGTAAACTTGAACAACTCGCACCGCAAGAAGTTGCACCATTAAC
GAATTCAGATAATACACAGCTAGCTGATCCGCAATGTCAGATAGCTATTT
CACAGTTATCAGACCCCATTATAACAGACCAAACATCAGTTTTATCACTT
TTGAAAGCTCACTCAGTTACTGGACCAAAAGCTCCATCTATCAAAATCAA
TCCCAACAAAACTGGCAACCAATCAAATTCGAAGCCATCGGAAATTATAG
TTAAAAATATTGTAATTAAAACCGAAATTTGAACTGAGAGcttgaattta
tatttttagttCATTGGTTTTCTAAATGCAGAGCTTTGAATAGAAATCTG
TTCCATCAATTCATACCCTATTACGCTTCTCAACACAGAAGCAATATCGA
TTAATTAGGCTCATATTTTTCTGACtaagtttttagaattcttaTCTTTA
TACTGTTTACATGACTGCTTTATTCTAGACTAGATTCTATAAGATTAGGT
ATATTCACGGGGTATTTTCATAATCACtttgagaaatatttcaaacattt
tttattatcaCTTTTGTACAACTTGTTGTTTTGTTCAACTTTTCAAATAT
ACTTcttgttcttcatttttttgtttcacaTTGTAAAGTACAGACCTGAA
Run BLAST on NCBI

protein sequence of TCONS_00001504-protein

>TCONS_00001504-protein ID=TCONS_00001504-protein|Name=TCONS_00001504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1203bp
MNTISIEDICNEAEGVIQQEIITDSIDGNQDIITVIQVNEEDASQETISS
TQTDIGDLSALATVAEYVPLLKDINNIAGNQCYDISAANMENESTVFDDL
DNDSKTESLEDSMVLSEESAKDMSVMVTPGEYFVTTTFDEMLQILQDYFD
RTATKFVVQKRTKDFGLKDENFDLMKHRIQWEDTKTQSNQSEYSFLPFDG
VPHITVGHYVMHCQFGSDHNALQKEKKKLLREKDAKKTRNVKNPTKKCGC
PAKINIKQVIKFPEFKVNKKTERRKRSCAGLLKEQYQRDKSKITTEMFFM
GRLPVMEEHKFHELLEGREFAKENVHRDLIIKAQELYFLNRSITDIAAEL
QSYVVNELFYKQEPPDKSRRKYNPTMKDLRNYIGKIRQLERFNKDDIIRM
DSLISSIHTEERNTKVLFNSEQENILDLQDTSSEDENTQPNQLECLSPSL
NKNNHHILSFLFCYQTQEHQRLLKRYGATAFVTEVHXQRLLKRYGATAFL
TEVHPSLTVKRALTFKFFVVFVQTNVDFQPVGFIVFSKRRNDGLKDGFST
LKNWNSSWSPKYLFIDSTEEMINASTKVFPDVPYFLNIHSCESQWLDYLL
TPSNELSVFDDDIMLFLRNMASSFSENSLSLAASSLEESSVWLKSINLRT
WFQSEWLPIAKKWVGGYRPEDLFVFDHIKYDFTSCLQVFVDLLSDSTKGC
SGFVGMVESLHRITVNEEYAKYIIRNREQNDLGNKLRVEEHLTDGMIGIP
SFIANHLYSTCKEASEQQFEVVEGTQVGVFHINTDASEPEVDNAAEETNA
ESEPLENVVAPKPENEIILEQDQVMTADSEQLQPQTENGITTEESNILSN
VLENCLLQTMEIPNMEVLPNSSSTENPSMIAETEVVDSDPSEFIASNEIT
LESNVEVKETSVQQVVFAQQMPEETTLSEQEEMVNSLHPPHVGKQETIVQ
DAKKLGTSTPKPAEKALPNDIELASLEQIDDENSVEEPNKEEESKGLSER
EDQQIDEAVNNMNEYTVSFGDSTSYPFCTCSHWQQHKLPCHHMFHVFQAV
PGWGFDMLSPVYRMNNKLHFDHSCIETHQKSKISHLFNKAVQTSEELPCT
VQTPQNRDIFQPISSLQMTGQLHRQVSDLLFHLNKSSFLFKDIVTYKRLR
SQLTDLFKASHVTLTNDNPSKPPNGPTXYLRTRPSNDCRFRTTPTTNRKR
NHN
Run BLAST on NCBI

transcript from alignment at sc0000010:828895..838056-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001504 ID=TCONS_00001504|Name=TCONS_00001504|organism=Clytia hemisphaerica|type=transcript|length=9162bp|location=Sequence derived from alignment at sc0000010:828895..838056- (Clytia hemisphaerica)
CTATAAAATTGCGATCATTTAAATTATTTTAAGTAGACCAAAAAAAAACG AAATGAAAAATGAATACCATATCCATCGAAGACATTTGTAATGAAGCTGA AGGAGTCATTCAACAAGAAATAATTACTGATAGTATTGATGGAAATCAGG ATATCATAACAGTGATTCAAGTGAACGAGGAAGATGCCTCTCAAGAAACA ATATCTTCCACACAAACTGATATTGGAGATTTGAGTGCACTTGCTACTGT TGCAGAATATGTACCATTGTTAAAAGATATTAATAATATTGCAGGGAATC AGTGTTATGACATTTCCGCAGCAAATATGGAGAATGAATCAACTGTTTTT GATGATCTTGATAATGACTCCAAGACTGAATCATTGGAAGATTCAATGGT TCTTTCGGAAGAATCAGCAAAGGATATGTCAGTTATGGTGACCCCTGGTG AATATTTTGTGACAACAACTTTTGATGAAATGTTACAAATTTTACAAGAT TATTTTGATAGAACTGCAACAAAATTTGTTGTTCAGAAACGGACCAAAGA CTTTGGATTGAAAGGTGAGGAAGTTATAGAGTTCAAAATGAATTTGTTAT TTTTAAGTTATGTCTTTGGTTAAACTTTAGGTTTCTTGAACCTGTTAAAT GATATCATTTAAAACTTATCAACAAACATTTTNTCAGAAACGGACCAAAG ACTTTGGATTGAAAGGTGAGGAAGTTATTGAGTTCAAAATGAACTCAAAA TGAATTTGTTATTTTTAAGTTATGTCTTTGGTTAAACTTTAGGTTTCTTG AACCTGTTAAATGATACTTACAATGGATCTTTTTAACAACTTTCTCTACC TTCCCCGCAATAATATGTGAGCATTTTTGCTTTTATCAGCATAAGGGGAG CACCTGCTTGATGATAGTAACATTTTCATATTATATGTTTTCTTTTAATT GATCAAAACAATATTCAATTTTATTTAAATTGTATTTCTATATAGATGAG AATTTTGATTTGATGAAGCATCGCATACAATGGGAGGATACCAAGACTCA AAGTAACCAGTCTGAATATAGTTTTCTTCCATTTGATGGTGTACCGCATA TCACTGTTGGGCACTATGTCATGCATTGCCAGTTCGGTTCTGATCATAAC GCTCTACAGAAGGAAAAGAAAAAACTTCTAAGGGTAAGAATACTTTTTTG CTATAGGAAATTAAGGCTCCCTATGTGAAGAAATCAAGAATTTCTGTCTA TCTATTTACTCAGGAGATTTTGGTGGCAGAGCAGCATGTATTTTGTCCTT ATATAATAATGAAAGTAACAAAAAACCTTATAATGAAAAAAATATCTAAT GAATGAAAAAAAAGTAACTGGTTATGGTTTATCTGGGTTATCATTAACTA CTTTGGGACTCTCATATACTTGTTGGAGATAAATCGACTATAAATGAATT AGAAATCTTTTCTTTTTACCATCCAATACATTGAATAAAAAGCGCTCTTG GAATTGGTTATAGTTTTCAACAAGGGTTGTGATGGAAAGCCATCACCATA ATACACTCGTACTTTTGATTTCAGGAAAAAGACGCAAAGAAAACTAGAAA CGTAAAGAATCCTACTAAAAAGTGTGGATGTCCTGCTAAAATAAATATCA AACAAGTTATCAAGTTTCCAGAATTTAAGGTACTTCAAACAGTTTTTTGT TAATCATGAGATTTCAACCTAATCACTTTTGGAGTGGGTTGATGATATAG TTAATGGAATGTACTGCTGGATATTTAAAAAAAAATCCCATAAACCATTG TTATTTTCTAAATCCATTTTCTGCAACTTTATTCAAGGTTAACAAGAAGA CAGAGAGACGAAAACGAAGTTGTGCTGGACTCCTCAAAGAACAGTATCAA AGGGATAAATCGAAAATAACTACTGAAATGTTCTTTATGGGTCGTCTACC TGTGATGGAAGAGCACAAATTCCATGAGTTACTTGAGGTCTTAATATTCT ATCCATATTCACTTAAAAGATTAAGCCATCTTGATCGGCCAAAGTTTTCT CTACAAAACAATTTTCAGAGTGTTTCATCTCTTGATCACAGACTAGCTAT TTAAAAATTGAGTTTCACAACTAGCAACCGTAATCCTACATTCATTTACC AGGCCAGCACNGATCGGCCAAAGTTTTCTCTACAAAACAAGTTTCAGAGT GTTTCATCTCTTGATCACAGACTAGCTATTTAAAAATTGAGTTTCAACAG TAATCCTGCATTCATTTACCAGGCCAGCATTGATTATATTTCTTAATTTT ATTGTAGGGAAGAGAATTTGCAAAAGAAAACGTTCATCGAGATCTCATTA TAAAAGCACAGGAATTGTATTTTTTGAACCGATCGATAACAGACATTGCA GCTGAACTACAAAGCTACGTTGTCAACGAATTATTTTACAAACAAGAGCC ACCTGATAAAAGCCGAAGAAAGTATAACCCAACTATGAAAGATTTGAGAA ACTATATTGGCAAAATAAGACAGTTAGAACGCTTCAATAAGGACGATATC ATAAGGATGGACTCTCTCATCTCATCCATTCATACGGAGGAGAGAAATAC TAAAGTACTGTTTAACTCAGAACAAGAAAACATTCTTGACTTGCAGGACA CCTCTTCGGAAGATGAGAATACACAACCAAATCAATTGGAATGTTTATCT CCCAGTCTTAACAAGAACAATCATCACATATTATCTTTTCTATTTTGTTA TCAAACACAAGAACATCAAAGACTGTTGAAACGATATGGAGCTACTGCAT TCGTAACAGAAGTTCATNATCAAAGACTTTTGAAACGATATGGAGCTACT GCATTCCTAACAGAAGTTCATCCTAGTCTGACAGTCAAAAGAGCGTTAAC TTTTAAATTCTTCGTCGTCTTTGTACAAACTAATGTTGACTTTCAACCTG TCGGGTTTATCGTGTTCAGTAAACGTCGCAATGATGGTTTGAAAGATGGC TTTTCTACCTTGAAAAATTGGAATTCATCATGGTCACCTAAATACCTGTT TATTGATTCCACTGAAGAAATGATCAACGCCTCAACTAAAGTCTTTCCAG GTCAGTGCTTGTTGTTATTGTTGTGTTAACCCATTCTAAGTCTCATTATT CCATAGTTTTTTTATTCGGGTAGGCTTAGAAACAGGGCGGCATTGGCGCT CCTAGGTCCAGACATATAGGTACAGAACTGAAATAATGTTGTGGGATATT ATATGTGACTTCCCAAGCGATTTAAAGTACCTGAAAATCAGACCGGTCTT GGTCCGGTATTACGAGCGGTCTAGTAGCGGTCAAATTTTTGTTTTAGATC GGCCTCCAGACTTTCTAGAAACGTGATCTCTAACGGTCGTGGCCGCTTCT AGACGCTCGTGGCAGATCGTTAGACCGGTCGTGGCCGCTCACTAGACCGG TCCTGACCGCTCGTTGGACCGATCCAGGCCGATCGTTAGACCGGTCCAGG CCGCTAGTTAGTGATTTTTAGTAATAATTACATCAAAAAAATGTTGTAAA AGGATGTCAACTGAGCGATCGGGGCCGGTCCCCTAAACTCGTAGCGGCCG TTTGGTAAATTTTTACCGGTCATTTACCGGCCCTTAAAAGACCGTCTAAA GACCGGTCCCATTTTCAGGTACTTTACATCGCTTGGGGAGTCACATATTA TTCCAGTGCCACTTAATGGGTTAAATACAAAAAAACTTCGAAAAAATATC AAAAATTTTTAGAAATTCAAATTCTCGTTTAATCTAATTATATACCACCA CAAATGGTTTTTGCAGCTTCAAGGAAGAAATATTTGATTTGAGATGTTCG AGCTAGGCCTTATAAAAACTAGAATGTTTTAAGGAACTTTCTGAGATGCA AAGCGAGGCTATTATTCAAGTTTTTTGCTGCAATCATTCTGTTTGGAAGT ACAACATTGAAGCTTTTTAACATATAACAAGAAAATGTAAATAAAAAATA GATGTTTAACTTTTAGATGTGCCCTATTTCCTGAACATTCACTCATGTGA AAGTCAATGGTTGGATTACCTCTTAACACCCTCCAACGAGTTGAGTGTAT TTGATGATGACATCATGTTGTTTTTGAGGAACATGGCTTCCTCCTTTTCC GAGAATTCTCTTTCGTTGGCTGCTTCTTCTCTTGAGGAAAGTAGTGTTTG GCTAAAATCCATCAATTTGAGGACATGGTTTCAATCAGAATGGCTACCAA TTGCAAAGGTTATGTTTTTAGAAGTTCTCTTTTATAAATACAGTTTTAAA ATCTTCTTTCTTGGCATTTTATGATGATTCTATGGGCCATTAAATTACCA TACAGGTCGGACGAACCTTTTCAAATCATAAAACATTTCTTGGAAATGTG TGGATGGATACCCCCTACACTCTTAGAAAATTTCTTTTCATAGCTTAATA AAGTGAACTAAAATTAGTCTTTTACCCCCTGGTAAAACGAGAAAAAAAAC ACTCTTTTAGACTCTAATAACCACATGGAAATGTTCGTCCAACCCTTGAT TTGATATAAAATGACAGGCCCAATTTCGGTTCATCAAACTTTGATATTGT TTTTTCCTCAGGCTTAATAATATTTCGAACTTGGTGATAATCTACAGGGA CTGATCTTTAAACTTTTCTACTTTATTTTGTGCTATAACAGTCTTTTTAA TTTTTCATCACCAAACAGAAATGGGTTGGTGGATATAGACCAGAAGATCT CTTCGTTTTCGATCATATCAAATACGATTTTACGTCTTGTTTGCAAGTGT TTGTGGACTTGCTGAGTGATTCCACCAAAGGATGTTCTGGTTTTGTTGGT ATGGTGGAAAGTCTCCATCGCATCACCGTCAACGAGGAATATGCAAAGTA TTTTCATAATAAGTTTGACTTGAATTTCTCTATTTTTTGCCTTTAAACTC TAATTTGATTCATCTTGTTGACCATGAACGAGTTTGAACTCAATTCCTTT TGTAAAGATTTATCATTGTCCGTATAAAAACTCTGGTCTGGAAGCTCATT GTTTTATAAACTTTTTGTAAGCTTTTTCCTTTGTTTCCAAGTACTCTTCT TGGGATTGGTTTAAGATTTAATCACATGATCAAAAAGTGAGCAAAATTTG TTCATGATCTGTCACCATAAGTGTGCAGTCTTATTCTTGATATTCATGAC GTAATTTTTTATACGGAAACACCCGAAAAACAACGGGCGTTTGCCACTAG TTTTGAATTTGAACAATGAAACTGTTGGCAAACGCCCGATGTTTTTTGTG TGTTTCTGTATAAAAGAATACGTCATGAATATCAAGAATTTAGCTTTCAT GAAAACCATGTCAATGAAATGAGAAAAAAATTCCCTTGGAATCGGTTTTG GCATGATAGCCAAAAAGTGTGTACGTTTATTGTGAATGGACTTAATTAAT CTATTGCGCTTTTCCAAATGTTTGTAATTTCAGATACATCATACGTAACC GAGAACAAAATGATCTTGGCAACAAACTAAGGGTAGAAGAACATCTCACC GACGGCATGATTGGCATCCCATCATTCATTGCGAACCATTTGTATTCAAC TTGCAAGGAAGCTTCTGAACAACAATTTGAAGTGGTAGAAGGTACACAGG TTGGTGTGTTTCATATCAATACTGATGCTTCTGAACCAGAGGTTGACAAT GCTGCTGAAGAAACCAACGCTGAATCCGAACCATTGGAGAACGTAGTAGC TCCTAAACCAGAGAATGAAATTATCTTAGAACAAGACCAAGTAATGACTG CAGATTCAGAACAACTCCAACCACAAACAGAAAACGGAATCACAACTGAA GAATCTAACATTCTGTCAAACGTTCTTGAGAATTGTTTACTACAAACCAT GGAAATACCCAATATGGAGGTCCTTCCTAATAGCTCGTCAACGGAGAACC CAAGCATGATCGCAGAAACAGAAGTGGTTGATTCTGACCCATCAGAATTC ATTGCATCGAATGAGATTACTTTAGAATCTAATGTTGAGGTAAAAGAGAC TTCGGTACAACAAGTGGTTTTTGCACAACAGATGCCTGAAGAAACCACTT TGTCAGAACAAGAGGAGATGGTCAATAGTCTCCATCCTCCTCATGTAGGA AAGCAAGAAACGATTGTACAGGATGCTAAAAAGCTGGGTACATCTACCCC TAAACCAGCAGAGAAAGCACTGCCTAATGATATAGAGCTGGCCTCGTTGG AACAGATTGACGATGAGAATTCGGTAGAGGAACCAAACAAAGAAGAGGAG AGTAAGGGATTATCAGAAAGAGAAGATCAACAAATTGACGAAGCAGTGAA TAACATGAACGAATACACTGTCTCTTTTGGTGACTCCACCTCCTACCCAT TCTGCACTTGTTCCCACTGGCAACAACATAAACTACCATGTCATCATATG TTTCATGTTTTCCAAGCAGTGCCGGGATGGGGATTCGATATGTTGAGTCC TGTATACCGAATGAACAATAAACTTCATTTCGATCATTCATGCATTGAAA CTCATCAAAAATCCAAAATCTCACATTTGTTCAATAAAGCAGTCCAAACA AGCGAAGAGTTACCCTGCACTGTACAAACACCACAGAATCGAGATATTTT TCAACCAATCAGTTCTCTTCAGATGACTGGTCAACTTCATAGACAAGTAT CCGACTTACTGTTTCATCTGAACAAATCTTCATTTTTATTTAAAGATATC GTGACGTACAAGCGATTACGTAGTCAACTTACTGACCTCTTTAAAGCCTC TCACGTGACCCTGACTAATGATAATCCCTCAAAACCACCAAACGGACCAA CCTNTTATCTTAGAACAAGACCAAGTAATGACTGCAGATTCAGAACAACT CCAACCACAAACAGAAAACGGAATCACAACTGAAGAATCTAACATTCTGT CAAACGTTCTTGAGAATTGTTTACTACAAACCATGGGAATACCCAATATG GAGGTCCTTCCTAATAGCTCGTCAACGGAGAACCCAAGCATGATCGCAGA AACAAAAGTGGTTGATTCTGACCCATCAGAATTCATTGCATCGAATGAGA TTACTTTAGAATCTAATGTTGAGGTAGAAGAGACTTCGGTACAACAAGTG GTTTTTGCACAACAGATGCCTGAAGAAACCACTTTGTCAGAACAAGAAGA TACGGTCAATAGTCTCCATCCTCCTCATGTAGGAAAGCAAGAAACGATTG TACAGGATGATACATCTACCCCTAAACCAGTAGAGAAAGCACTGCCTAAT GATATAGAGCTGGCCTCGTTGGAACAGATTGACGATGAGAATTCGGTAGA GGAACCAAACAAAGAAGAGGAGAGTAAGGGATTATCAGAAAGAGAAGATC AACAAATTGACGAAGCAGTGAATAACATGAACGAATACACTGTCTCTTTT GGTGACTCCACCTCCTACCCATTCTGCACTTGTTCCCACTGGCAACAACA TAAACTACCATGTCATCATATGTTTCATGTTTTCCAAGCAGTGCCGGGAT GGGGATTCGATATGTTGAGTCCTGTATACCGAATGAACAATAAACTTCAT TTCGATCATTCATGCATTGAAACTCATCAAAAATCCAAAATCTCACATTT GTTCAATAAAGCAGTCCAAACAAGCGAAGAGTTACCCTGCACTGTACAAA CACCACAGAATCGAGATATTTTTCAACCAATCAGTTCTCTTCAGATGACT GGTCAACTTCATAGACAAGTATCCGACTTACTGTTTCATCTGAACAAATC TTCATTTTTATTTAAAGATATCGTGACGTACAAGCGATTACGTAGTCAAC TTACTGACCTCTTTAAAGCCTCTCACGTGACCCTGACTAATGATAATCCC TCAAAACCACCAAACGGACCAACCTACAATAACAGTGTTCTCACAACTTT AAAGAACGCAGGTTCGATACAAAGAGCTCAAAATATTGACCCTAAGAAAG TGAAAGTGAAAGTCGCACCCAGGGCAACGTCCTTGAACTTGACACAAGGA AATGCGGTCAATATCGAAGAGATTAATCGGCTTTTAGCGGCTGTTTCGCA ACTTGTTTCTGAAGATGAAATCATCAAGGCTAATGAAGCCAACGCTATTA TTGTCAATAACAGTGATATTCAAGAAACTTTTCAGGAAAGTTCGCCCTCT GAAAGCCTTACTAATACAAATGATGAGACTCAATCAAAGCCTGTCATCGC CAGACAGTCGCCAGACAAATCAGCAAGTCCCATTTCCACCGACAATAATG ATACTTTAATCTCCCTCTCCGAAACACCCACCACTATCGATTCAATAATA AACTTACAACCTCTGATACACCCCGGTATCAAGCGTGACACTTCCCAGAT TTTAACACAAACAGAAAATGACAAGATGGACGACCAGTCACTCAATAATA AAGTCTCCATATTAGAATATTTACCACTGCTGAAAAAGAAATGTGTTACA CCAGAGGACATTGCAAATGGTAAACTTGAACAACTCGCACCGCAAGAAGT TGCACCATTAACGAATTCAGATAATACACAGCTAGCTGATCCGCAATGTC AGATAGCTATTTCACAGTTATCAGACCCCATTATAACAGACCAAACATCA GTTTTATCACTTTTGAAAGCTCACTCAGTTACTGGACCAAAAGCTCCATC TATCAAAATCAATCCCAACAAAACTGGCAACCAATCAAATTCGAAGCCAT CGGAAATTATAGTTAAAAATATTGTAATTAAAACCGAAATTTGAACTGAG AGCTTGAATTTATATTTTTAGTTCATTGGTTTTCTAAATGCAGAGCTTTG AATAGAAATCTGTTCCATCAATTCATACCCTATTACGCTTCTCAACACAG AAGCAATATCGATTAATTAGGCTCATATTTTTCTGACTAAGTTTTTAGAA TTCTTATCTTTATACTGTTTACATGACTGCTTTATTCTAGACTAGATTCT ATAAGATTAGGTATATTCACGGGGTATTTTCATAATCACTTTGAGAAATA TTTCAAACATTTTTTATTATCACTTTTGTACAACTTGTTGTTTTGTTCAA CTTTTCAAATATACTTCTTGTTCTTCATTTTTTTGTTTCACATTGTAAAG TACAGACCTGAA

Coding sequence (CDS) from alignment at sc0000010:828895..838056-

>TCONS_00001504 ID=TCONS_00001504|Name=TCONS_00001504|organism=Clytia hemisphaerica|type=CDS|length=3612bp|location=Sequence derived from alignment at sc0000010:828895..838056- (Clytia hemisphaerica)
ATGAATACCATATCCATCGAAGACATTTGTAATGAAGCTGAAGGAGTCAT
TCAACAAGAAATAATTACTGATAGTATTGATGGAAATCAGGATATCATAA
CAGTGATTCAAGTGAACGAGGAAGATGCCTCTCAAGAAACAATATCTTCC
ACACAAACTGATATTGGAGATTTGAGTGCACTTGCTACTGTTGCAGAATA
TGTACCATTGTTAAAAGATATTAATAATATTGCAGGGAATCAGTGTTATG
ACATTTCCGCAGCAAATATGGAGAATGAATCAACTGTTTTTGATGATCTT
GATAATGACTCCAAGACTGAATCATTGGAAGATTCAATGGTTCTTTCGGA
AGAATCAGCAAAGGATATGTCAGTTATGGTGACCCCTGGTGAATATTTTG
TGACAACAACTTTTGATGAAATGTTACAAATTTTACAAGATTATTTTGAT
AGAACTGCAACAAAATTTGTTGTTCAGAAACGGACCAAAGACTTTGGATT
GAAAGATGAGAATTTTGATTTGATGAAGCATCGCATACAATGGGAGGATA
CCAAGACTCAAAGTAACCAGTCTGAATATAGTTTTCTTCCATTTGATGGT
GTACCGCATATCACTGTTGGGCACTATGTCATGCATTGCCAGTTCGGTTC
TGATCATAACGCTCTACAGAAGGAAAAGAAAAAACTTCTAAGGGAAAAAG
ACGCAAAGAAAACTAGAAACGTAAAGAATCCTACTAAAAAGTGTGGATGT
CCTGCTAAAATAAATATCAAACAAGTTATCAAGTTTCCAGAATTTAAGGT
TAACAAGAAGACAGAGAGACGAAAACGAAGTTGTGCTGGACTCCTCAAAG
AACAGTATCAAAGGGATAAATCGAAAATAACTACTGAAATGTTCTTTATG
GGTCGTCTACCTGTGATGGAAGAGCACAAATTCCATGAGTTACTTGAGGG
AAGAGAATTTGCAAAAGAAAACGTTCATCGAGATCTCATTATAAAAGCAC
AGGAATTGTATTTTTTGAACCGATCGATAACAGACATTGCAGCTGAACTA
CAAAGCTACGTTGTCAACGAATTATTTTACAAACAAGAGCCACCTGATAA
AAGCCGAAGAAAGTATAACCCAACTATGAAAGATTTGAGAAACTATATTG
GCAAAATAAGACAGTTAGAACGCTTCAATAAGGACGATATCATAAGGATG
GACTCTCTCATCTCATCCATTCATACGGAGGAGAGAAATACTAAAGTACT
GTTTAACTCAGAACAAGAAAACATTCTTGACTTGCAGGACACCTCTTCGG
AAGATGAGAATACACAACCAAATCAATTGGAATGTTTATCTCCCAGTCTT
AACAAGAACAATCATCACATATTATCTTTTCTATTTTGTTATCAAACACA
AGAACATCAAAGACTGTTGAAACGATATGGAGCTACTGCATTCGTAACAG
AAGTTCATNATCAAAGACTTTTGAAACGATATGGAGCTACTGCATTCCTA
ACAGAAGTTCATCCTAGTCTGACAGTCAAAAGAGCGTTAACTTTTAAATT
CTTCGTCGTCTTTGTACAAACTAATGTTGACTTTCAACCTGTCGGGTTTA
TCGTGTTCAGTAAACGTCGCAATGATGGTTTGAAAGATGGCTTTTCTACC
TTGAAAAATTGGAATTCATCATGGTCACCTAAATACCTGTTTATTGATTC
CACTGAAGAAATGATCAACGCCTCAACTAAAGTCTTTCCAGATGTGCCCT
ATTTCCTGAACATTCACTCATGTGAAAGTCAATGGTTGGATTACCTCTTA
ACACCCTCCAACGAGTTGAGTGTATTTGATGATGACATCATGTTGTTTTT
GAGGAACATGGCTTCCTCCTTTTCCGAGAATTCTCTTTCGTTGGCTGCTT
CTTCTCTTGAGGAAAGTAGTGTTTGGCTAAAATCCATCAATTTGAGGACA
TGGTTTCAATCAGAATGGCTACCAATTGCAAAGAAATGGGTTGGTGGATA
TAGACCAGAAGATCTCTTCGTTTTCGATCATATCAAATACGATTTTACGT
CTTGTTTGCAAGTGTTTGTGGACTTGCTGAGTGATTCCACCAAAGGATGT
TCTGGTTTTGTTGGTATGGTGGAAAGTCTCCATCGCATCACCGTCAACGA
GGAATATGCAAAATACATCATACGTAACCGAGAACAAAATGATCTTGGCA
ACAAACTAAGGGTAGAAGAACATCTCACCGACGGCATGATTGGCATCCCA
TCATTCATTGCGAACCATTTGTATTCAACTTGCAAGGAAGCTTCTGAACA
ACAATTTGAAGTGGTAGAAGGTACACAGGTTGGTGTGTTTCATATCAATA
CTGATGCTTCTGAACCAGAGGTTGACAATGCTGCTGAAGAAACCAACGCT
GAATCCGAACCATTGGAGAACGTAGTAGCTCCTAAACCAGAGAATGAAAT
TATCTTAGAACAAGACCAAGTAATGACTGCAGATTCAGAACAACTCCAAC
CACAAACAGAAAACGGAATCACAACTGAAGAATCTAACATTCTGTCAAAC
GTTCTTGAGAATTGTTTACTACAAACCATGGAAATACCCAATATGGAGGT
CCTTCCTAATAGCTCGTCAACGGAGAACCCAAGCATGATCGCAGAAACAG
AAGTGGTTGATTCTGACCCATCAGAATTCATTGCATCGAATGAGATTACT
TTAGAATCTAATGTTGAGGTAAAAGAGACTTCGGTACAACAAGTGGTTTT
TGCACAACAGATGCCTGAAGAAACCACTTTGTCAGAACAAGAGGAGATGG
TCAATAGTCTCCATCCTCCTCATGTAGGAAAGCAAGAAACGATTGTACAG
GATGCTAAAAAGCTGGGTACATCTACCCCTAAACCAGCAGAGAAAGCACT
GCCTAATGATATAGAGCTGGCCTCGTTGGAACAGATTGACGATGAGAATT
CGGTAGAGGAACCAAACAAAGAAGAGGAGAGTAAGGGATTATCAGAAAGA
GAAGATCAACAAATTGACGAAGCAGTGAATAACATGAACGAATACACTGT
CTCTTTTGGTGACTCCACCTCCTACCCATTCTGCACTTGTTCCCACTGGC
AACAACATAAACTACCATGTCATCATATGTTTCATGTTTTCCAAGCAGTG
CCGGGATGGGGATTCGATATGTTGAGTCCTGTATACCGAATGAACAATAA
ACTTCATTTCGATCATTCATGCATTGAAACTCATCAAAAATCCAAAATCT
CACATTTGTTCAATAAAGCAGTCCAAACAAGCGAAGAGTTACCCTGCACT
GTACAAACACCACAGAATCGAGATATTTTTCAACCAATCAGTTCTCTTCA
GATGACTGGTCAACTTCATAGACAAGTATCCGACTTACTGTTTCATCTGA
ACAAATCTTCATTTTTATTTAAAGATATCGTGACGTACAAGCGATTACGT
AGTCAACTTACTGACCTCTTTAAAGCCTCTCACGTGACCCTGACTAATGA
TAATCCCTCAAAACCACCAAACGGACCAACCTNTTATCTTAGAACAAGAC
CAAGTAATGACTGCAGATTCAGAACAACTCCAACCACAAACAGAAAACGG
AATCACAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000764XLOC_000764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001504-exon-sc0000010-1575043694:837493..838056TCONS_00001504-exon-sc0000010-1575043694:837493..838056Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1575043694:836874..837061TCONS_00001504-exon-sc0000010-1575043694:836874..837061Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1575043694:836378..836482TCONS_00001504-exon-sc0000010-1575043694:836378..836482Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1575043694:836070..836219TCONS_00001504-exon-sc0000010-1575043694:836070..836219Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1575043694:834957..835749TCONS_00001504-exon-sc0000010-1575043694:834957..835749Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1575043694:833799..834040TCONS_00001504-exon-sc0000010-1575043694:833799..834040Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1575043694:833160..833338TCONS_00001504-exon-sc0000010-1575043694:833160..833338Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1575043694:828895..832573TCONS_00001504-exon-sc0000010-1575043694:828895..832573Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:837493..838056TCONS_00001504-exon-sc0000010-1510915933:837493..838056Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:836874..837061TCONS_00001504-exon-sc0000010-1510915933:836874..837061Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:836378..836482TCONS_00001504-exon-sc0000010-1510915933:836378..836482Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:836070..836219TCONS_00001504-exon-sc0000010-1510915933:836070..836219Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:834957..835749TCONS_00001504-exon-sc0000010-1510915933:834957..835749Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:833799..834040TCONS_00001504-exon-sc0000010-1510915933:833799..834040Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:833160..833338TCONS_00001504-exon-sc0000010-1510915933:833160..833338Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1510915933:828895..832573TCONS_00001504-exon-sc0000010-1510915933:828895..832573Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:837493..838056TCONS_00001504-exon-sc0000010-1491911889:837493..838056Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:836874..837061TCONS_00001504-exon-sc0000010-1491911889:836874..837061Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:836378..836482TCONS_00001504-exon-sc0000010-1491911889:836378..836482Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:836070..836219TCONS_00001504-exon-sc0000010-1491911889:836070..836219Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:834957..835749TCONS_00001504-exon-sc0000010-1491911889:834957..835749Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:833799..834040TCONS_00001504-exon-sc0000010-1491911889:833799..834040Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:833160..833338TCONS_00001504-exon-sc0000010-1491911889:833160..833338Clytia hemisphaericaexon
TCONS_00001504-exon-sc0000010-1491911889:828895..832573TCONS_00001504-exon-sc0000010-1491911889:828895..832573Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001504-proteinTCONS_00001504-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:828895..838056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.2968 17.4897 9.4654 7.22326 15.7997 12.2544 11.9741 11.2964 4.82251 6.10553 5.26005 3.63284 5.54245 5.24096 4.23319 4.81295 5.99617 5.37765 4.04903 4.90273 5.84054 5.88284 12.48 12.6329 8.07555 10.205 5.01771 3.05988 9.21646 9.75669
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029309CaRF
IPR007527Znf_SWIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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