TCONS_00001515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001515
Unique NameTCONS_00001515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001515 ID=TCONS_00001515|Name=TCONS_00001515|organism=Clytia hemisphaerica|type=transcript|length=2607bp
aaaacactagacaGAGCTACTCCGTCCCTGctgttccttgggaaatacag
agtagctctatctagtactttatataagatatctatggTAAACATGCTTT
CTCTCTATTTTTACCAAACACAATAGCTCAATTTAGCTAATCTTTTGTTA
TGATAAAACCTAAAAAGGAATATGTAATGTTTGATAATAGGAGGGTGAAG
GTGCAGCTAACTTTGTTGTTGAGTTGTCATTGAAAACAGAAGGAGTGGTT
TGCCGATTTAAACGTTACAATCCAATCTTtccaacaaatttttatttgtg
gAACCATAACCAAAAAATTACAAGATGCAAAAGGCCAAGAAATATGACTG
GAAAGATTCCAACATGGCCCTCTTTGGGTCTGATACTGAGAAGAAAGTGA
AGAAAGAATCAGCAGAAAGTGAGCCTGCATGGAAAGGAGCTGGTGAAAAA
GTTGGTGTTCAAGTTTGGAGAATTGTCAAATTCAAGGTCACCCACTGGGA
CAAAGAACAATATGGTGAATTTTTTAATGGAGATTCTTATATTATTTTGa
atacttacaaaaataaagaCAGCGATGAACTCCTTCATGACCTTCACTTC
TGGATCGGAAAATACTCCACTCAAGATGAATACGGTACAGCAGCTTACAA
AACTGTTGAATTGGACACCTTTTTGGATGATAAACCAATACAACATCGTG
AAGTTCAAGGACATGAATCATCAaagtttaaaagctatttttcaAcatTT
ACCTTATTGAAAGGAGGAGCAGACACAGGATTCAACagagttttaccaga
aaactatCCCAGCAGATTGTTCCATGTGAAAAAGGTTTCACGAACCAAAA
TCACTTGTACTGAAGTCAGTTTaaagaaaggaaatttgaaatctGAAGAT
GTCTTCATCATTGATGCTGGAAACAAAATCTACCAATGGAACGGTAGCGA
ATGTAGTCACGACGAGAAGTTCAAAGCAGCACAAGAAGTTGCTCGCATCA
AAGGAAAGCGTGGCAAGTGTCGTGTTGATAACCTTGATGAAGGATCCATC
TCAGAAGAACATCCAGCTATCATGATGTTGAAAGATGGAGAATCAAAACC
TaaagGAGAAGCTGCAAAGGGAGAACGAAAAATGTTCAGAGTAAGTGATG
CTGATGGCAGTTTGGATATGGATGAGATCGATGGAGACATTTCCAAGAGC
AACCTCACCTCTGATGATGTCTACATCATTAATACTGGAGACCATGTTTA
TTGTTGGGTCGGCAAAGGAGCCAGCGTTGACGAACGAAGAAATGGATTGT
CATATGCTTCCAATTATTTGAACAAGACAGAAACTCCTTACCTACCCATC
TCAGTGGTGGCAGAGGGAAAAGAAAACGCCGAATTCAACGCTGCTTTCTA
GATGCATTGACCACTTGGATTTAAGGTGATAAGCACCATCGATTCAAAAT
GGCTGCTCTTCAAACCACCAACCTATAAGGTTGATTTCGACAAAACGTCT
ACATAATTTATTCGTCATTTTCGTCCAATTAGAAATCAcgttttaagaat
tttcaacgCATAGTATTTTTTAGGGGgaatatcattttttttaattttga
tttacttttttaacatgttaattatttttacacatttcatttatttactt
ttccaGTGCATACATTTTGGTTTCCACAAAATTACAACCTGAAAATAGat
ttcgtaaaatttctttttgtctcTCTCTAGAATTTTGAACCAGTTTCGAT
CGCATATTAGCGTATTTTTGTACAGTACAAATGTatatttttcgttattt
ttgtcatcatttaatttcaaaatttttagtttaGCCTTCTATATTGGAAA
TCtgataaaaaaagtcaaaatattataCATACAGGGTTTGCAATGTATTT
TTACAACGATAATAtgtatcaaaaaaagaaatattcagtATCTAGAAATA
GAATAATTCCACAGTACATAGTTGTTACCTTTTCTTCCTTCcctttatta
aaagaaaatttatcaaaaaaattgccttgttcaaaaataccaaaacacGT
TCCCTTTGATATTCCTAATTTCatacacctccttctcacagacccactgg
gaacccttcctactggaaaaatttaccaaaatatcgtccccggtgggaaa
ttatACTCAGACTTTTTTCGCCacagaaaataatcaaataaaacaatcct
cactgcaaaatatttactattttcccatccccactgaattttctgactag
aaaacaaaagaattgaaatccccagccatagaaAATATGTATCGATCTCC
ATCGAGTTTCATCCTCTACTCCGTTATTTTCATCATcactaactgaaaaa
aaatcctacAGGGAAGGGGGTGTTTTCATTCTTTCATACATCTGGAATAC
TGTTGACCATCTTCTTTAagtcgaaagcatccaccgaaggggaACTTGTT
CTACTGaaattgggaccagctggaaaaatatggtctgttctactcAAGAT
Tgggggaccagctggaaaaatatgatctgttctactgaagattgggacca
gctggaaaaatatgatctattcttatgaaaaaatagtttgatatccaaaa
aataagg
Run BLAST on NCBI

protein sequence of TCONS_00001515-protein

>TCONS_00001515-protein ID=TCONS_00001515-protein|Name=TCONS_00001515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MQKAKKYDWKDSNMALFGSDTEKKVKKESAESEPAWKGAGEKVGVQVWRI
VKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQ
DEYGTAAYKTVELDTFLDDKPIQHREVQGHESSKFKSYFSTFTLLKGGAD
TGFNRVLPENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGN
KIYQWNGSECSHDEKFKAAQEVARIKGKRGKCRVDNLDEGSISEEHPAIM
MLKDGESKPKGEAAKGERKMFRVSDADGSLDMDEIDGDISKSNLTSDDVY
IINTGDHVYCWVGKGASVDERRNGLSYASNYLNKTETPYLPISVVAEGKE
NAEFNAAF
Run BLAST on NCBI

transcript from alignment at sc0000010:1148555..1157763-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001515 ID=TCONS_00001515|Name=TCONS_00001515|organism=Clytia hemisphaerica|type=transcript|length=9209bp|location=Sequence derived from alignment at sc0000010:1148555..1157763- (Clytia hemisphaerica)
AAAACACTAGACAGAGCTACTCCGTCCCTGCTGTTCCTTGGGAAATACAG
AGTAGCTCTATCTAGTACTTTATATAAGATATCTATGGTAAACATGCTTT
CTCTCTATTTTTACCAAACACAATAGCTCAATTTAGCTAATCTTTTGTTA
TGATAAAACCTAAAAAGGAATATGTAATGTTTGATAATAGGAGGGTGAAG
GTGCAGCTAACTTTGTTGTTGAGTTGTCATTGAAAACAGAAGGAGTGGTT
TGCCGATTTAAACGTTACAATCCAATCTTTCCAACAAATTTTTATTTGTG
GAACCATAACCAAAAAATTACAAGATGCAAAAGGCCAAGAAATATGACTG
GAAAGATTCCAACATGGCCCTCTTTGGGTCTGATACTGAGAAGAAAGTAA
GTTAATTCATTATGAGCTTATCTCCAAAACCTTTTTATCACATCTTTAAA
AAGTTAAGGTGTCTAGTTTTACTCTTAGCTAATATGGTTGATAATAAAAG
ATTTTAAAGAATTTCCACTTTTTTTATTGTATTAGTTCTCAGTGTGAAAC
AAGGCTTAAAATAAAGCCTTTTTTATTTAATGCTGCTGTTAGGTCTTCTT
CTAACCAAAGAATTACAATAATTAATTAGATTAAGTCCTTGTATTTTTGA
CACTGATTAAATGATGAAATGTGCTACAACAAAAAGAATGGCTGCATTAA
GAATCAACATGTTCAATTTATACATACAACATTTTGGTTTGATGCAGTGT
GTCTTTATCTTCTGGTTCTGGTCATCATGATATATAAAAATTTTCCAAAA
AAATAGGCAATTCAAAATGGGCTTTTATATTCAACCTTTTAACTTTACAG
GAGTAATTGATGAAATTTTCCTTGGGGTCAAATCTTCTTTCAAGGGAATT
TTGTTCATTTTTCAGATTCTCTAATCAGGTCATTACCGTCAACTGCTCTA
ACTTGGCAGTTACATCAATATGCCTTCTTACCTTTCTTTAAAAATATAAA
TAAAAGCAATCACAGAAAAGGACGCGAAAAAAAAGACATAAGTGTGAGAA
CAGAGTAATCAAACTCGTTAGAAAAAGTACCATTAGAAGTCATAAAAAAT
CAACCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTGAAAGT
TTGTCTCAGCCTTTTTATAATGAGCGAGACATACGTTCTCTGATTACGCA
ATTTTCATATTGACATTTTCGAGGCATTTTGATGTAACTGCTTGGGACGA
TTGGATTGGTTGAAACATGGGATTGTTGATATCTGGCCTGTATTTTCACT
TACTGTTAAATCTCTTTGACAACAAATTTGTTTTGATAACTCCACCAAGT
TTATCAATCATACTTCTTCGTTCCTCTTAGAGTGCACAGACACACACAGA
TTTTTTTCATGTTTTGATTTAAAAGCCTACTCGGTGCGAAAGAGAAATTG
TGTGAAATTGCCGTTCATTAACTCAAATCAAATGACTTTGGAGGTTCGGT
GAAATGGTGGCCGAATTGCTGTCCCATGTTTTGTCAGGTAGTCCCAAGTA
AGAGCAGTTGACGGTATAACATGTCACAATAACTTTCACTGCGCGCCCTT
TTTAACTTCTTTGTTTTCATTCAAAATGACCGGACGCAGATTGGAGAATT
AAGAACGCCCGCCGTCTAATTGCCTATCGTCCGATGGGATTAACAAATAA
CGAGTGTGTAACTTGCCGCGCGAGTGACGTCAAATGCTCCATCGTGTTCC
ACTATAGATTTTTTTCATATTTCGATTTAAAAGCCTACTGTACTCGGTGC
AAATTCATTAACTCAAATCAAATGATTTTGGAGGATCGGTGAAATTTACT
TTTGAAAATCTTCAGGATTTCCGTAAGAATCTTTAAGGAAAAATCTTGGA
ATTTGTGAAATAGAAAATAGAGCAAATTTTATGGATTTTAAGATATGGAT
GACCAAATAATTATTTTCCGGAACCTTCATATCACAATTACTCAGGATTT
CTAAGAAAAGAAAATTCCAAAAAACAGCGTCGCTCACAGGTAATGGTTTT
TTTCTGGAACTGCCCATTACACTAGGTAAGAAAACTTTCCAATTTCTTCA
GATATACAAAAATTTGCACTATCCAAACAATACAAATTGATAAATATTCT
AATACAATAATGCCAAATGCAAATTTCCAAGAAAATTATTAAAACGTGAT
AAAGGGCATAATTCCAGGCATAATTATTCAAAATTTTCAAGGAGTTGTAA
AAACGTACGTCAATAAATACCTGTGTAAAAACTTTCCTTCAAACAATTTG
ATGGTATAAATTTTTGCAGAGATCAAATTCCACTAATTTTCCAAATGCGC
TAGAATCGCTCGCAAACAATTGGCAAAAAGTCTGGCGAATTTACCAACTC
TCTGACTCTATTTTACTCAATTTTCATGAGTCGGCCGGGCGAGGCAAAAT
GATTATTTTTTTGATTGCCACCTTACTGCCAAACCATAGCTGTCAACTCT
CTGGGGGCTTGGGCAAAATGGGTGTCAGGTATGTGTGAGTCATAAAGGTC
CCTTTAAACCCTCAAAAGTCTCTCAAAGGGGTACAAAAGACAATAAGTTG
GCATTGATTCTCTGAAAGGGTCCCAAAATTACGAAATATCAAGAATCAAC
TCCCTCAAAGGGTCATAAAATCTGGTAATTTTGAGCTTAAAATTGGGAAA
ATAGTTTCTCAAAGGGTTGCAAAAACGTCTAAATTCAGTCAATTCTCAAA
CTTTAGCTCAGACATCCCTGTCACCTTGCAAGCTAGTACTTACCTGAGCA
ATTCTCCCACATAGACCTTTTGATAAGCGCAATACTATTTTGACTCCAGT
GGTGAAAATATTAATGACTCCACACAATAGCCTGATATTAGATCAATTTC
CACATGTTTAATATTTATCATACTGTGGTATATAACTATTAACTAATAGA
CAGGCAGCTGATGCCATCTGAAATTTGGATGACTTTGGTACAAATTCTGT
GTTGGTTTCTCTTATTCCCATATATTTACTGATCCTAAAAATTTTACTCG
GTGTCCCAAAAGAATTTTGGTCAATAATGACCCTCTAACCCACAGTAACC
CCCTGAAAATGTCAACTTTTAACGTCACACAGCAGAAAAAAATCCATCCT
ACGATTGTTCTTTGAATTAGTTTTTGAGGTTTGGCTTGGGTCAAGATTTT
TAAACATGATGACCAACTGACTAGGAAATCAATGTTAGAAAAAAATGTGC
TATGTGTAGTGACACATGAGCTCAAATGTTAGCTGTTAGGTTGATACTGG
CATTTTTGTAACTAACTGGCTCTTATGGTTTATATTTTTGTTTTTATTAA
CAGGTGAAGAAAGAATNAATGTTAGCTGTTAGGTTGATACTGGCATTTTT
GTAACTAACTGGCTCTTATGGTTTATATTTTTGTTTTATCAACAGGTGAA
GAAAGAATCAGCAGAAAGTGAGCCTGCATGGAAAGGAGCTGGTGAAAAAG
TTGGTGTTCAAGTTTGGAGAATTGTCAAATTCAAGGTAAGGAGTGAACTC
TATAAAGTTATTTATTCTAAAATGATCGGAATTGGCCCCAATCCTAATTC
TAAACATAAAAAAATCATTTAGTTTTTTAAAATGTTATTATAATGTTCCT
GAAATCAATTATTGATTACTTTTATTGGATTATATTAAAAATGTTCTGTG
ACAAATGAATTTTTAATTTCTCACAAGGTTTGATTAATTTTTCTTCCGAC
AGGTCACCCACTGGGACAAAGAACAATATGGTGAATTTTTTAATGGAGAT
TCTTATATTATTTTGAATACTTACAAAAATAAAGACAGCGATGAACTCCT
TCATGACCTTCACTTCTGGATCGGAAAATACTCCACTCAAGATGAATACG
GTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTTTTGGATGATAAA
CCAATACAACATCGTGAAGTTCAAGGACATGAATCATCAAAGTTTAAAAG
CTATTTTTCAAGTAAGTGACAAAGTATGTTTTGACTTTCAATTATGTTTA
AAGGTAGTTTAAGGGAAGTTAGTGGGACACCTCTCTTTTGAAAATGTGTC
ATATTTTTCTGGGTGATTGGATATCCCTATACCATACTATATAATCCAAA
CCACATTCTAAAGCGTCAATTCTTCTTCTCCTCTTTCTAAATAAATCACC
ATTTAGGAAGGAGGAACATATTATCTATTTCTATCAACTCTTTTTACCAT
TTTTCATTTTAAACTTAACTTTTTTTTTCAGCATTTACCTTATTGAAAGG
AGGAGCAGACACAGGATTCAACAGAGTTTTACCAGAAAACTATCCCAGCA
GATTGTTCCATGTGAAAAAGGTTTCACGAACCAAAATCACTTGTACTGAA
GTCAGTTTAAAGAAAGGAAATTTGAAATCTGAAGATGTCTTCATCATTGA
TGCTGGAAACAAAATCTACCAAGTAAGGATCTGTAGATGAACCCTCCCGT
ATTCTGCAAAATCAAATGTAATTTTCGAAAGGAAAAATCAGACCCGATTA
GTGTTTTAATCATTTAAAGTACTTTTACTTATAAAGTTATAAATATTGAG
TATTGAGAGAAGAGGTCAGCTGCTGATTGTACGAAAAAAAGAAATCAGAG
CAGGGTACTCGATGTAACTCCTCACAAAGGGTATGTAAGGGTCGATCTGA
TATCTCACTTTGTCTATAAGGGTGTCAAAAATTAAAAAAATGTTTTCCTT
TGAGCAAGACTCAATCAAATTTGACTATAATTTCTCTGCACTTTAATGGT
CCAATTTCTACGTTTGTCCGTGCATTATGTGGCGCTTTTTTTTAAATCAA
GTGCCCGCCGAGTTCAGGAAGTATTTTGTTTCTTGCATCGTAAAAAAAAA
AACAATATGAAACTTATTTTTTTAGTGGAACGGTAGCGAATGTAGTCACG
ACGAGAAGTTCAAAGCAGCACAAGAAGTTGCTCGCATCAAAGGAAAGCGT
GGCAAGTGTCGTGTTGATAACCTTGATGAAGGATCCATCTCAGAAGAACA
TCCAGCTATCATGATGTTGAAAGATGGAGAATCAAAACCTGTAAGTAATC
TTTTTTACCTTCAGATGAGATGGAGTTTTTACAAGTGACTTCACTAATTG
GTTATTTGAAGTAACGAAAATGACGCGTTCTTTAGAAAAAGTAACAAAAT
TGTATTATTACTGGTTAACGACCAACCAATTCAAAGAGAGCTTGTAAAAA
ACTCAATCTCGTCCCTTTACCTTACGTTAAGAGAAGAAACTTTGGCGAAT
TGGCGCAATTCGCTAGTTTTCGTTTAATTTGGTGGAATTTATTTTGGTGA
ATGACCCGTTATTTTGTTAGCATACAGGATGAAAAAGGAGAAATATAGGT
TGTTTTTATGAAAAATCTGGGCAAAATTGACAGTAATTAGATTTGGCGAG
AATCAATTTTTATTAAATGGAATTTGCTAAGTTGACCGAAATTTTTCCTT
TAAGGTATTTCCTTTTCATGAATTTGCAACTAATTGCTGCTTTAAAAATT
CTAAAATTTTCTTGATATGTTACGAAGTTCTTAGCTTCAAATTTCTCGTT
TTTTAAACTTTTTTATTGATCTCACCCAGTAGAGATTTCAAGAAGGAGTT
GAAATGGAATGCTTAACTTTTATTAAACTTCCCCATTGTATTGCATAACG
TATGTTTGGGTTTAGTTTTTTTATTAGTATGTCGAATTAAAGTGATGTAA
TTTCTTAATCGAGCTGGACTTGTCATTAAATTACTGTTGAGGTTAATACA
GTAATCAATGTATGTATCAATGTTTACCCTTCGTCGCGTGAGAGATAATT
CGAAATGGTGTGTTTTCTTTTTTTAGAAAGGAGAAGCTGCAAAGGGAGAA
CGAAAAATGTTCAGGTAAGTTTTTAGAGATTCCCTTTAAAAAGTTTTGAC
CTTTGTTCATTTTCTAAACAGCATGTAATGTAAATGGTAGTTCTAAACTT
ATTTTGGTTTCTGACAATGCTGGTCAATTTGGAACGTTTTCGTCACACAA
TGTCAATTAAAAAATATATCTTCTTTGAAATAAATGAAAATGAATATCAT
CCCGGAAAAATAACTGATGTGAGATGTTAAATCAAAAGGACACCAAATTT
CTTAATAATCTTACTTTCCATTTCTAGAGTAAGTGATGCTGATGGCAGTT
TGGATATGGATGAGATCGATGGAGACATTTCCAAGAGCAACCTCACCTCT
GATGATGGTAAATTTAGATTTAAGCATCAGTGTTCGTATAATCTTGGAAC
CATTCAAATGAGAATTATACTCAAGCTCAAACAGACCCGAAGCGAAGCAA
AAAGTTGTTTTCCTTTTTTTTTTTTTGGTGCATAAATTACGTCACGATCA
ACGCTTACCTCGTTTTCAAAATATTCATAATGTTAATTGATTCCTAGATG
AGTTCAAAAGAGGCTTACTCTATTCAAAAAAATACTTGTAGACTCAATTT
GATCACTTTGGTAATGGTTTCAAAACGAGGCAGTCTGTAGATTTAGCTCC
GTCTTTCGGCATTACCATTTGTCATATGTTTGATTTTTCTTGTTTTTTGC
CACGTTTTAGTCTACATCATTAATACTGGAGACCATGTTTATTGTTGGGT
CGGCAAAGGAGCCAGCGTTGACGAACGAAGAAATGGATTGTCATATGCTT
CCAATTATTTGAACAAGACAGAAACTCCTTACCTACCCATCTCAGTGGTG
GCAGAGGGAAAAGAAAACGCCGAATTCAACGCTGCTTTCTAGATGCATTG
ACCACTTGGATTTAAGGTAAAGACTTAATGGTGTAAGAAAGAAATTTCTG
TTGTCATTCGATGTGTTCTAGGAACCGTGCTTTTTTTCTCTCGATGTCTT
TTGAAAAAGTATGTTTTTCAAGATAACAGAAATGCACTGTAAGGGTGGAC
ATTTCAGCAAATCCAGGAAAAATTGCTAATATTAGTCCGAAAATTGTTTT
TTTTGCTCAAAGAGACTTGAGAATTTGAGAAAAATATACCATAAGGGTAT
ACATTTCACTGATATTTTGCTGCACTGTAAGGATGCGATTCTAAAAGTCA
TTTTTTCGCCGCACAAACCTTGTCTTTAGCTCTTGTATTATTCCTTGTCA
AGCTTCTTCTTCGAAAATGTCTTCCGATATGTTGAACGACTGTAGGATTT
GTTGGCTTCAAATCCTACCATAGAGATTCGATTCTAGCCCTTCGAGCTTA
TACTTCATTGGGCCCCCCATATGTTTGGTCCAACGAACCAGAAAATACTT
TAGATTTTAATACCCTCTAAATTAGCTTAAGCAGCGACTCTCTAAACGTC
AATTTTAAAGGATTGGAAACAATTTGGTAATGATTTAGAATATTGTCTCC
AAAACTGTTTTTCTGGTGTCGCAACATGATATCTTGAAAAATATTGGATG
GCTACGGCACTGAATTCAGAAAACTTATTGTGTTTCGTGATTATTATTAG
GTTATCTTTGGACATCAGAATCTATGTCAACTGATTAATATTCAAATCCA
TTATAAAAATTTATTTTCTGTTTATAGGTGATAAGCACCATCGATTCAAA
ATGGCTGCTCTTCAAACCACCAACCTATAAGGTTGATTTCGACAAAACGT
CTACATAATTTATTCGTCATTTTCGTCCAATTAGAAATCACGTTTTAAGA
ATTTTCAACGCATAGTATTTTTTAGGGGGAATATCATTTTTTTTAATTTT
GATTTACTTTTTTAACATGTTAATTATTTTTACACATTTCATTTATTTAC
TTTTCCAGTGCATACATTTTGGTTTCCACAAAATTACAACCTGAAAATAG
ATTTCGTAAAATTTCTTTTTGTCTCTCTCTAGAATTTTGAACCAGTTTCG
ATCGCATATTAGCGTATTTTTGTACAGTACAAATGTATATTTTTCGTTAT
TTTTGTCATCATTTAATTTCAAAATTTTTAGTTTAGCCTTCTATATTGGA
AATCTGATAAAAAAAGTCAAAATATTATACATACAGGGTTTGCAATGTAT
TTTTACAACGATAATATGTATCAAAAAAAGAAATATTCAGTATCTAGAAA
TAGAATAATTCCACAGTACATAGTTGTTACCTTTTCTTCCTTCCCTTTAT
TAAAAGAAAATTTATCAAAAAAATTGCCTTGTTCAAAAATACCAAAACAC
GTTCCCTTTGATATTCCTAATTTCATACACCTCCTTCTCACAGACCCACT
GGGAACCCTTCCTACTGGAAAAATTTACCAAAATATCGTCCCCGGTGGGA
AATTATACTCAGACTTTTTTCGCCACAGAAAATAATCAAATAAAACAATC
CTCACTGCAAAATATTTACTATTTTCCCATCCCCACTGAATTTTCTGACT
AGAAAACAAAAGAATTGAAATCCCCAGCCATAGAAAATATGTATCGATCT
CCATCGAGTTTCATCCTCTACTCCGTTATTTTCATCATCACTAACTGAAA
AAAAATCCTACAGGGAAGGGGGTGTTTTCATTCTTTCATACATCTGGAAT
ACTGTTGACCATCTTCTTTAAGTCGAAAGCATCCACCGAAGGGGAACTTG
TTCTACTGAAATTGGGACCAGCTGGAAAAATATGGTCTGTTCTACTCAAG
ATTGGGGGACCAGCTGGAAAAATATGATCTGTTCTACTGAAGATTGGGAC
CAGCTGGAAAAATATGATCTATTCTTATGAAAAAATAGTTTGATATCCAA
AAAATAAGG

Coding sequence (CDS) from alignment at sc0000010:1148555..1157763-

>TCONS_00001515 ID=TCONS_00001515|Name=TCONS_00001515|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0000010:1148555..1157763- (Clytia hemisphaerica)
ATGCAAAAGGCCAAGAAATATGACTGGAAAGATTCCAACATGGCCCTCTT
TGGGTCTGATACTGAGAAGAAAGTGAAGAAAGAATCAGCAGAAAGTGAGC
CTGCATGGAAAGGAGCTGGTGAAAAAGTTGGTGTTCAAGTTTGGAGAATT
GTCAAATTCAAGGTCACCCACTGGGACAAAGAACAATATGGTGAATTTTT
TAATGGAGATTCTTATATTATTTTGAATACTTACAAAAATAAAGACAGCG
ATGAACTCCTTCATGACCTTCACTTCTGGATCGGAAAATACTCCACTCAA
GATGAATACGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTTTT
GGATGATAAACCAATACAACATCGTGAAGTTCAAGGACATGAATCATCAA
AGTTTAAAAGCTATTTTTCAACATTTACCTTATTGAAAGGAGGAGCAGAC
ACAGGATTCAACAGAGTTTTACCAGAAAACTATCCCAGCAGATTGTTCCA
TGTGAAAAAGGTTTCACGAACCAAAATCACTTGTACTGAAGTCAGTTTAA
AGAAAGGAAATTTGAAATCTGAAGATGTCTTCATCATTGATGCTGGAAAC
AAAATCTACCAATGGAACGGTAGCGAATGTAGTCACGACGAGAAGTTCAA
AGCAGCACAAGAAGTTGCTCGCATCAAAGGAAAGCGTGGCAAGTGTCGTG
TTGATAACCTTGATGAAGGATCCATCTCAGAAGAACATCCAGCTATCATG
ATGTTGAAAGATGGAGAATCAAAACCTAAAGGAGAAGCTGCAAAGGGAGA
ACGAAAAATGTTCAGAGTAAGTGATGCTGATGGCAGTTTGGATATGGATG
AGATCGATGGAGACATTTCCAAGAGCAACCTCACCTCTGATGATGTCTAC
ATCATTAATACTGGAGACCATGTTTATTGTTGGGTCGGCAAAGGAGCCAG
CGTTGACGAACGAAGAAATGGATTGTCATATGCTTCCAATTATTTGAACA
AGACAGAAACTCCTTACCTACCCATCTCAGTGGTGGCAGAGGGAAAAGAA
AACGCCGAATTCAACGCTGCTTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000774XLOC_000774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001515-exon-sc0000010-1575043694:1157368..1157763TCONS_00001515-exon-sc0000010-1575043694:1157368..1157763Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1153779..1153868TCONS_00001515-exon-sc0000010-1575043694:1153779..1153868Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1153303..1153561TCONS_00001515-exon-sc0000010-1575043694:1153303..1153561Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1152842..1153032TCONS_00001515-exon-sc0000010-1575043694:1152842..1153032Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1152224..1152388TCONS_00001515-exon-sc0000010-1575043694:1152224..1152388Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1151400..1151437TCONS_00001515-exon-sc0000010-1575043694:1151400..1151437Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1151057..1151136TCONS_00001515-exon-sc0000010-1575043694:1151057..1151136Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1150498..1150703TCONS_00001515-exon-sc0000010-1575043694:1150498..1150703Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1575043694:1148555..1149736TCONS_00001515-exon-sc0000010-1575043694:1148555..1149736Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1157368..1157763TCONS_00001515-exon-sc0000010-1510915933:1157368..1157763Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1153779..1153868TCONS_00001515-exon-sc0000010-1510915933:1153779..1153868Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1153303..1153561TCONS_00001515-exon-sc0000010-1510915933:1153303..1153561Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1152842..1153032TCONS_00001515-exon-sc0000010-1510915933:1152842..1153032Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1152224..1152388TCONS_00001515-exon-sc0000010-1510915933:1152224..1152388Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1151400..1151437TCONS_00001515-exon-sc0000010-1510915933:1151400..1151437Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1151057..1151136TCONS_00001515-exon-sc0000010-1510915933:1151057..1151136Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1150498..1150703TCONS_00001515-exon-sc0000010-1510915933:1150498..1150703Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1510915933:1148555..1149736TCONS_00001515-exon-sc0000010-1510915933:1148555..1149736Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1157368..1157763TCONS_00001515-exon-sc0000010-1491911889:1157368..1157763Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1153779..1153868TCONS_00001515-exon-sc0000010-1491911889:1153779..1153868Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1153303..1153561TCONS_00001515-exon-sc0000010-1491911889:1153303..1153561Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1152842..1153032TCONS_00001515-exon-sc0000010-1491911889:1152842..1153032Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1152224..1152388TCONS_00001515-exon-sc0000010-1491911889:1152224..1152388Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1151400..1151437TCONS_00001515-exon-sc0000010-1491911889:1151400..1151437Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1151057..1151136TCONS_00001515-exon-sc0000010-1491911889:1151057..1151136Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1150498..1150703TCONS_00001515-exon-sc0000010-1491911889:1150498..1150703Clytia hemisphaericaexon
TCONS_00001515-exon-sc0000010-1491911889:1148555..1149736TCONS_00001515-exon-sc0000010-1491911889:1148555..1149736Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001515-proteinTCONS_00001515-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1148555..1157763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
277.366	294.998	318.996	312.251	335.335	255.66	536.355	548.207	453.139	519.682	328.053	274.426	324.114	296.664	252.334	314.853	171.594	157.629	321.283	318.973	138.4	151.664	151.531	153.429	82.0208	119.67	134.911	117.908	211.53	229.757
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007122Villin/Gelsolin
IPR007123Gelsolin-like_dom
IPR029006ADF-H/Gelsolin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0051015actin filament binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051015 actin filament binding
Blast
[Close]
BLAST of TCONS_00001515 vs. Swiss-Prot (Human)
Match: GELS (Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.650e-47
Identity = 116/342 (33.92%), Postives = 186/342 (54.39%), Query Frame = 1 
Query:  424 PAWKGAGEKVGVQVWRIVKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPIQHREVQGHEXXX-XXXXXXXXXLLKGGADTGFNRVLP-ENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGNKIYQWNGSECSHDEKFKAAQEVARIKG--KRGKCRVDNLDEGSISEEHPAIMMLKDGESKPKG--------EAAKGERKMFRVSDADGSLDMDEI--DGDISKSNLTSDDVYIINTGD--HVYCWVGKGASVDERRNGLSYASNYLNKTETP-YLPISVVAEGKENAEFNAAF 1398
            P +  AG++ G+Q+WR+ KF +       YG+FF GD+Y+IL T + ++ + L +DLH+W+G   +QDE G AA  TV+LD +L+ + +QHREVQG ES+     + S     KGG  +GF  V+P E    RLF VK   R  +  TEV +   +  + D FI+D GN I+QW GS  +  E+ KA Q    I+   + G+ RV   +EG  +E    + +L    + P G         A +   K+++VS+  G++ +  +  +   ++  L S+D +I++ G    ++ W GK A+ +ER+  L  AS+++ K + P    +SV+ EG E   F   F
Sbjct:   57 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGN-LQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVK--GRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEG--TEPEAMLQVLGPKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFF 393

HSP 2 Score: 132.494 bits (332), Expect = 1.417e-31
Identity = 101/330 (30.61%), Postives = 157/330 (47.58%), Query Frame = 1 
Query:  436 GAGEKVGVQVWRIVKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPIQHREVQGHEXXXXXXXXXXXXLL--KGGADTGFNRVLPENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGNKIYQWNGSECSHDEKFKAAQEVARIKGKRGKCRVDNLDEGSISEEHPAIMMLKDG-ESKPKGEAAKGER---KMFRVSDADGSLDMDEIDGDISKSNLTSDDVYIINTGDHVYCWVGKGASVDERRNGLSYASNYLNKTET---PYLPISVVAEGKENAEFNAAF 1398
            G G+K   Q+WRI        D   YG+F+ GDSYIIL  Y++      +  ++ W G  STQDE   +A  T +LD  L   P+Q R VQG E +   S F    ++  KGG      +  P +  +RLF V+  S       EV  K G L S D F++   +  Y W G+  S  EK   AQE+ R+     + +   + EGS  +     +  K    + P+ +  K +    ++F  S+  G   ++E+ G++ + +L +DDV +++T D V+ WVGK +  +E+   L+ A  Y+           PI+VV +G E   F   F
Sbjct:  443 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQI--IYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPAS--TRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEK-TGAQELLRVL----RAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWF 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GELS6.650e-4733.92Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1[more]
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