TCONS_00001570 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001570
Unique Name	TCONS_00001570
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3266

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000011:141382..153715+
coding sequence from alignment at sc0000011:141382..153715+

transcript sequence

>TCONS_00001570 ID=TCONS_00001570|Name=TCONS_00001570|organism=Clytia hemisphaerica|type=transcript|length=3266bp
CGAGACGGTCAATAACAAGACCTTCTTTTGCTGATTCtgcaaaataattt
tagatgtAAACAAGAGCCGGAGAAGatcgtttgaaaaaaatttgctggta
ggaaaatttatatattttattttaaattgcctAATTGATGTAAACAGCTC
GTAAAGAAGATGTCAATTTTGCAAAGAGATGAAGAACTGATAATCTTTTT
CTAATGGAGCGTATTGCTTTTTGTGAAGACTCCATTTTTTGCAGCAATGG
CACAGGTTTCCTGTTCAAATGGTTTTTCTTCAACAGAGGAAACTTCCAAG
ATGGCTGCCGACCAAGCCTTGCTAAAAAACTCAAATGCTAATATCTTTGG
AGATATTGAATCCATGAGATGTGAAAAAtgcaaaagcaaaaagaaaaagg
tgACCGTTGTCTGTATTGACTGTGGAGAACTTGCTTTATGCAATGATTGT
AACCGCAAAGTACATGAAAATAATAAAGTTCAACATCAGCTGCATGAATT
GAGACCAAAAACACAGACTCTAGCCAAAGAAAAGCAAATTAATGGAACAT
TGAATGGATCAATTAATGGAACAATTCATCACAAGAAGAACAATAGTATT
GCAAAGCTTGACATAGTGCACAATGACAAACCAAAAAGTTTATTATTGAT
TGACAGTACAGAAAGATTGCAGGTAACAAAAGAGGGTGATTTCAAGCATT
TACTTGGTTGTGATGATGATCCTCGAGTGAAAGTTGTTTCAATCTTTGGA
AACACAGGAGATGGAAAATCACATACTCTGAATCATACATTTTTTGACGG
CGCTGAAGTATTTGATACATCACCATCCCAAAAATCATGTACCGTTGGTG
TATGGGTTTCCTACTGCCCGAACCAGAAAGCCATCATCGTGGATACAGAA
GGTCTGCTTGGtgtttcagaaaatgcaaataagAGGATGAGATTGTTGAT
GAAGATTCTTGCTGTCTCGGATGTTGTGATTTATCGTACAAGAGCAGAAC
GCCTACATTCTGATATGTTTACTTTCTTGGGTGATGCTTCAGAAGCCTAC
atcaaatatttcacaaaagaTCTTCAATCAGTTCAACAAAGAGGCCATAT
GGAGAATGTTCCCTTGTGTAGCTTAGGTCCCTCTATTGTTATCTTTCAAG
AGACACATTACACTACACCACTTGGTTTTGAAAATGATCCATCAGAACAT
GATAACAGTCCAGAAGAGATTTTGAGatccaattttttcaacattggACG
CAATCCAGCTGCATTTAGTTCCATCAATTATGTTGGTACAAGAACGACTA
CCCAATCCACTGATTTCTCTATCCTCTTGAATGAAGTGAAGAAAAACCTC
AAGAACAAGACCGTTCGTTCTGCAAGACCTGTTTCTGTCATTTTCAATGC
TTTGATgTTTTTGAATGACAAATTCGGTGATGATATCAATGACATCCTAC
CAAACAGTTTCCCTGATGAATATTTTACATGTGTTTCAAAATGTTTATCA
TGCAGTGCTCGATGTGGAAAAAACATGAATCAtgagaaagaagagaaaga
acatCGCTCAGAACAAAAGTGTACATATCAAGCACAATTTGACAACAAAG
TATATACGTGCAAGGCATGCCATGAGAAAGGCGTTGAATCACTTGTGATA
CCCAAAACTGCTGAAACTCAAGATTCTCCCTTGGTTGGTCTTGCAAAATA
TGCTTGGTCAGGATATGTTCTTGAATGTCCAAAATGTGGTGTTATTTACC
GAAGTCGACAATTTTGGTATGGCAATGGTGAAGTAGAGAATTTTGTGCGC
ATTGAAATCAAACATGTCTGGCCAGGGACACGACTTCCAAACACTAGTCA
AAATTCAGCACGACGCATTTTGGATGGTATGATGAACTTGGCAGATGCAA
TCACCAATGTTAGTGCAAAACCTACTAAAGCTGTCACCAGTTGGGTTACT
GATAAAGTTGCTCCAACCTACTGGACACCTAACTATCTCATTATTGACTG
TGCAAAATGTGGCCATGATTTTGAAGAGACAGAGAAGAAACATCATTGTC
GAGCCTGTGGTCGAGGTTATTGTGACTCGTGTACACAACATAGGATTCCT
GTACCGGACAGAGGCTGGGGAGACACGCCCGTTCGTGTTTGTGATGATTG
CTTCACTAAATCCGGACAAGTCGATCAATCGAGTGTGCAGAAGAATTCGA
TCGATATCAGTGAGTTGTTGGAAGCGATTGATGATGACCCTGAAATCGAT
ACAGGTGAAATGGTAGCCATCAAAACCGCCAAAAACATACCCACCCGCCA
CCCGCCTGAAGTTCTCACAACACGGAAAGTAACCGAGCAAGTCCAGTCCA
CACTTTCATTCCTATCAAGCTCTTTAGAATATCCCTTGGAGTATTTAGTG
GATTCGGCCAGACCTGATTATTGGGTTCCAGATTCCAAGATTTTGAATTG
CCACTCATGCGAAATGGAATTCTCAAAAAAAGATTCTAAGCATCATTGTC
GCAAGTGTGGAAAGGGCTTTTGTGATCCATGCTCAAAGTCTAGAGTGCCG
GTACCGAGTCGTGGTTGGGATTATCCAGTTCGTGTTTGTAACGGATGTTC
GTTGAAGAAAGGTCCTTTGTAATGATTGAGGGTATGATGTCATCATTTAT
AATGATCTGTTGATGGTTGGCTTTATTTGGCTttattatgttttgattta
actttctGCTTAAAAAAAGATATCTACAACCTATGCTGTTGTTTTCCATA
TAACTTTATCGTGATGCTCTTGAATGTAAAGTATCCACACATACTTGAag
cttttttgaatttattcaaAGCTGTGTGAAGAGCATCTCGCTACTTTTCT
TCATGTCTTTTTTGTATCTCTAAACTTGTAACTAGAACTGTATGAATTGT
CATCCCAAAGTTGTTCGTTGTCCCCTAGGACCAGTTATGAATCCTAGTGG
GACACTTCTTTGGAAATGATGAAGTAGACTTAGCTTTTATATCCTAAATC
ATAATCATAATTTTTATCGCTGTACTGTActttactttcgtttttaaccc
TAGTTTCTAAGGGTGCTTGTTCCTTATGTTGAGTTAAGTAGTTAGAGAAT
tgtgttgttttttaattttttacatCACTTTGTGGCTACTGAAAGGTCCC
GTCGAGTTTCTTCAAGTTTTAACCAAATGGGGCCAGATCAAGGATCACAG
acgggtcaaattaaattctcttTACCTTATAATTACGAAGCGTTTCAGTT
TCATTTTTGAGATGAC

Run BLAST on NCBI

protein sequence of TCONS_00001570-protein

>TCONS_00001570-protein ID=TCONS_00001570-protein|Name=TCONS_00001570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp
MAQVSCSNGFSSTEETSKMAADQALLKNSNANIFGDIESMRCEKCKSKKK
KVTVVCIDCGELALCNDCNRKVHENNKVQHQLHELRPKTQTLAKEKQING
TLNGSINGTIHHKKNNSIAKLDIVHNDKPKSLLLIDSTERLQVTKEGDFK
HLLGCDDDPRVKVVSIFGNTGDGKSHTLNHTFFDGAEVFDTSPSQKSCTV
GVWVSYCPNQKAIIVDTEGLLGVSENANKRMRLLMKILAVSDVVIYRTRA
ERLHSDMFTFLGDASEAYIKYFTKDLQSVQQRGHMENVPLCSLGPSIVIF
QETHYTTPLGFENDPSEHDNSPEEILRSNFFNIGRNPAAFSSINYVGTRT
TTQSTDFSILLNEVKKNLKNKTVRSARPVSVIFNALMFLNDKFGDDINDI
LPNSFPDEYFTCVSKCLSCSARCGKNMNHEKEEKEHRSEQKCTYQAQFDN
KVYTCKACHEKGVESLVIPKTAETQDSPLVGLAKYAWSGYVLECPKCGVI
YRSRQFWYGNGEVENFVRIEIKHVWPGTRLPNTSQNSARRILDGMMNLAD
AITNVSAKPTKAVTSWVTDKVAPTYWTPNYLIIDCAKCGHDFEETEKKHH
CRACGRGYCDSCTQHRIPVPDRGWGDTPVRVCDDCFTKSGQVDQSSVQKN
SIDISELLEAIDDDPEIDTGEMVAIKTAKNIPTRHPPEVLTTRKVTEQVQ
STLSFLSSSLEYPLEYLVDSARPDYWVPDSKILNCHSCEMEFSKKDSKHH
CRKCGKGFCDPCSKSRVPVPSRGWDYPVRVCNGCSLKKGPL

Run BLAST on NCBI

transcript from alignment at sc0000011:141382..153715+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001570 ID=TCONS_00001570|Name=TCONS_00001570|organism=Clytia hemisphaerica|type=transcript|length=12334bp|location=Sequence derived from alignment at sc0000011:141382..153715+ (Clytia hemisphaerica)
CGAGACGGTCAATAACAAGACCTTCTTTTGCTGATTCtgcaaaataattt
tagatgtAAACAAGAGCCGGAGAAGatcgtttgaaaaaaatttgctggta
ggaaaatttatatattttattttaaattgcctAATTGATGTAAACAGCTC
GTAAAGAAGATGTCAATTTTGCAAAGAGATGAAGAACTGATAATCTTTTT
CTAATGGAGCGTATTGCTTTTTGTGAAGACTCCATTTTTTGCAGCAATGG
CACAGGTTTCCTGTTCAAATGGTTTTTCTTCAACAGAGGAAACTTCCAAG
ATGGCTGCCGACCAAGCCTTGCTAAAAAACTCAAATGCTAATATCTTTGG
AGATATTGAATCCATGAGATGTGAAAAAtgcaaaagcaaaaagaaaaagg
tgACCGTTGTCTGTATTGACTGTGGAGAACTTGCTTTATGCAATGATTGT
AACCGCAAAGTACATGAAAATAATAAAGTTCAACATCAGCTGCATGAATT
GAGACCAAAAACACAGACTCTAGCCAAAGAAAAGCAAATTAATGGAACAT
TGAATGGATCAATTAATGGAACAATTCATCACAAGAAGAACAATAGTATT
GCAAAGCTTGACATAGTGCACAATGACAAACCAAAAAGTTTATTATTGAT
TGACAGTACAGAAAGATTGCAGGTATGTAtatttttttcacaaagtcaAA
AACTTCCAAATCATGAGGCAAGAGTAATCAATGAACGGGTTTACCATTGC
TTTggataaaatattttatgtatatAATGATTTAAAGTTCATCAGTCATA
ATCCATCATTTTCCAATACACAACCTTGTACACACAAGAAGATAAGCAGT
CCAGCTTTCTACTTTCTGTGTGATTttgagcttgattttttgtcaaaaaa
ttcatATGGAACAAAGGAAAATAGTCAAAGATcgacagtcaggcacatcc
tggcaaatgaacggggtgagcatagaccttttttcaaagaggatgtcctg
ttgaataattatgtagtccagccataaaaacaatgatagagccatgcata
attacagTATCATGCATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaaaagcgtgaaaatgaataaaaatgaacttcaaactg
aaaaagggaaaaaaggaagaaaactgggaactttattttttcattaaaag
tttcttcaatcttcaatcaagacaaaattgacccatggaaaaaaaatttc
atctatgcagttctttgaaatgaagcaaaatatttccaaccctgttcaat
taaactgggtattcggcgctattacgtcactttcgttttcgaccccattc
atttgccaatggtcgcaagtgaaaaatacgccgttcatttgccaggatgt
gcctgactgatcAAAGAAATTTACCTTTACTTTCAATTGCAATTGCATTA
ATAGAAAGTACAGGGGCTTTCAAAGCTTTATGAAATAGGGACTTCCACAA
GCTGCTAGAAAAAAGCCTTCAGATTGAAGACGAAAAAAATTTGCATTGTC
ATGATGGAGCACATGAAAAAATGAGCACATGAATAAAACCTGAGTAAGCT
GTTAAATAAATATCACTCTAACTACTTTGCAGACCAGACAGTTGCTATga
cggaattagacaaggtacTGTGAGTTGGTCTAATCAgcgaggctggaact
tcgatttttaaggattacgattttaccagctttttagcgaatTTTGCCTT
GCTAATCCAAATTTTGCTAATCTAAAGTTTTTCAGTGTTCcgaaaaaacg
catagcagaaattatttcatcttcacaggatcgattctcagcATTAAAAT
ACATCTTATGATTAGCTCGCgttctcgcgcgggcgaataaagatgaggcg
acAATCTTGCACTAAGGgtgctaccgtcaactgctctaacttgggactat
ctgacaaaacatgggacggcaattcggccaccatttcaccgaatgtccaa
agtcatttggtttgagttaaggaacagtatttaaaaatacaggatttctc
tttcaattttacagtaagtgaaaatacagaccagatatgcaacagtccca
tgttgcgaccaatcgtcccaagttagagcagttgacggtacttaGTTTCT
GCCCTATTTTGCGCCAACAATAGAATGGTTCAAATACAGGgatattccaa
atgataaatgaTGTtgttttgtaagtgtttattttctgagagatacaaat
aatatattgaatattattaacttatttattcaagtatttttgagcgcaaa
tttaaattttaaatttaaatttgatgtCAGATTTTTTCTGTGCTGCCACG
ATcctgaaaatgcaaaaatatggcagaaatcaacgaaaattctaacaatg
aaattcaacaaaattatgGATATTGCACACCCAATAACTGTTTAACAAAC
ACCATCATAGCAGATAACGACACCTTACAATGTAGGAGATGTGATAGACT
TGTCCATTATGCTTGCTCTGAGCTCCCGGCCTATATGATTCAGCTTTGTC
TGCAATATAAAAGCTGGCGCTTCGAATGTGGAAATTGTGTTACAATAACG
CCACTCTTACTTGAGAGGATTAAAACAAGCAGACAAAAAGCTCGCAGTAA
CATCACAACGAAAGAAGTAGATAAAGATGAACATCATAGATTGAAATTAG
GTTTCAACGAGAGAATAACCTTTCTAGAAAGGAAAGTCGAGAAgctaatg
aataaaaaagacGTCAACAAAGAGAGGAACAACAAACGATCTGAAACACA
GCTCGACAacacagaaacaaaaaaacaatcatatgcagaagtcaccaaag
aagatctacaaaaacaagaggtgaccataaaaagtttcatcaaatcAGTG
AACCAAGAGGAGCGTTGACTCAAATCAACCAAGTGCAACATCATAGTGCA
TGATTTAGGtgaaaacaaacacaaaaacaaagaaGAGCAACAAGTTGGTG
ACAAAGATTTTATAGAAAGAATACTGAAACAACAAATGGGTTTCGACGTG
ATGATAATCAAGGTAGAACGCATAGGTGCTGGCAAAGATGAATTGTATAC
AAATGAACGATGGAGACCATTAAAAGTTACTCTCGGGAGTGAAGAAGAAA
GGATTAGAATACTTGCATCAGCCCACAAACTAGATAAAGATGATTTCAGA
GTAtcagacgatttttcaaggaaagaatgggagataataaaacaatggca
tcataaagcaaaagaaaaaacatcgaaagaaaaagacaagagtcatatat
ggaaagtgagaggtagtcctaggactaaactctatttaaagaaatttacg
acgGAAACAACATGATTGTAAGAAGAGTGGGTTAGAGGCCAGAATTGACA
GATgaatggaatgataagatctataaattgtaaagatgtaagattgtttc
atagaggtcaatagacctgagaaatacacttctataaataaaaaaataaa
taccgtaaatcctcgaataagcgccccgcttgaataagtgccccgctcga
ataagcgcctcCCTTTTAGTTGAAATAATATTATAAGCGCCctgcttgaa
taagcgcccccctttgAATAAGCACCCCCTCCAGGGAGAAGTTTTTATTT
ATGGGTAAGGTTGGTACTACTTTCAGATGTGTGTGGAGAGGTGCACGTAC
ACGTGTGCATTGCACACCTCAAATGATTCAGTCTTAAGAAGTCTGAAAAT
TGGACAAGAAATAGATACCTAGATGATTCAATTGAAGGGAAACAACAATG
AAATAAACCAAATCAAGTCCAGCCTTATAATATTTGACTATTAAATTAAA
CCCAAGCTGCTCTCAGATTTTTTCTCCAANTCTGATTGACAACAATAGAA
TGATTAGTATTATAGAATCTTTTTATAtgtgttttcaaagtttttacaaC
TTGGAGCTTTGGTTCTTCTATACTCTTCATTTTTCCCATAGGATCATAGA
CCACATAGATAAATCAGTAATTGTTTCAGACAGTTTGAGATTTTCAAAGT
ATTTCTGcaaatttcaacaaaaggatgggatcaaaaaattttttgcttcA
TAAGGCATTACCTTTTAAAAAACTGTGTAATCTGGTGTAATCGAggtttt
attatttatttggatttcaGGTAGAACAATAATTTTGTACATTTCTAGGT
AACAAAAGAGGGTGATTTCAAGCATTTACTTGGTTGTGATGATGATCCTC
GAGTGAAAGTTGTTTCAATCTTTGGAAACACAGGAGATGGAAAATCACAT
ACTCTGAATCATACATTTTTTGACGGCGCTGAAGTATTTGATACATCACC
ATCCCAAAAATCATGTACCGTTGGTGTATGGGTTTCCTACTGCCCGAACC
AGAAAGCCATCATCGTGGATACAGAAGGTCTGCTTGGtgtttcagaaaat
gcaaataagAGGATGAGATTGTTGATGAAGATTCTTGCTGTCTCGGATGT
TGTGATTTATCGTACAAGAGCAGAACGCCTACATTCTGATATGTTTACTT
TCTTGGGTGATGCTTCAGAAGCCTACatcaaatatttcacaaaagaTCTT
CAATCAGTTCAACAAAGAGGCCATATGGAGAATGTTCCCTTGTGTAGCTT
AGGTCCCTCTATTGTTATCTTTCAAGAGACACATTACACTACACCACTTG
GTTTTGAAAATGATCCATCAGAACAGTAAGTAAATTATGACAGAAGGTCA
ATTTGTACTCTCTGGAAAGACTTCTTGAATTAATTCTctccaaaaacttt
taaaacttggCACTCttttttgtaaacgaaaaagaGGGGTTGATAACAAA
GCTACACAGCTTTTCACCTTGAGTTTACACAAAAGTAACATAGATTTCTC
TGAATAATCTTTTTGGTATATTCGTTCAATTGAGCACCAATTGATGCTGA
ATAATCCAAATACATCGATTTGACAATCTTAGAATacttcaaatttgttt
ttattttcactttacAGTGATAACAGTCCAGAAGAGATTTTGAGatccaa
ttttttcaacattggACGCAATCCAGCTGCATNTAaataccgtaaatcct
cgaataagcgccccgcttgaataagtgccccgctcgaataagcgcctcCC
TTTTAGTTGAAATAATATTATAAGCGCCctgcttgaataagcgcccccct
ttgAATAAGCACCCCCTCCAGGGAGAAGTTTTTATTTATGGGTAAGGTTG
GTACTACTTTCAGATGTGTGTGGAGAGGTGCACGTACACGTGTGCATTGC
ACACCTCAAATGATTCAGTCTTAAGAAGTCTGAAAATTGGACAAGAAATA
GATACCTAGATGATTCAATTGAAGGGAAACAACAATGAAATAAACCAAAT
CAAGTCCAGCCTTATAATATTTGACTATTAAATTAAACCCAAGCTGCTCT
cagattttttctccaattcaaGAATTGAATTTACATAATATTCCTAAGTG
AAAGACTTGGAATGTCTCTTGAAAGGTACTTTCAGATAAGTATCCTTGGT
AGATTTTTTTAATCGATTAAATGTGATAAACCTTCTTGGAAAATACTAGA
ATTTTAAGCTAAATTTGATTGGGTAATTTTGATTTGGAAATACAAGGAAT
TTTAAGGCAATTTTGCTTTAGAAAAATAAGAGGTAATTGTCCTGAGGAAG
TACAATAAGTGAtgtatgtaatttttctttgagataCAAGGAAGTGTTTA
TTAATGGATCGTTTAGTAAATCCAATTTCGAATTTGACAGATAGTCTGGC
CGGAATACAATAAAATAGGGGTGAACGTAGAAAAAAATTCCGCGTAGACt
ttcttggtaccgttggaagcgaaattttatgtagattatcaTACTCAAAG
CCTCNGTGATGATGATCCTCGAGTGAAAGTTGTTTCAATCTTTGGAAACA
CAGGAGATGGAAAATCACATACTCTGAATCATACATTTTTTGACGGCGCT
GAAGTATTTGATACATCACCATCCCAAAAATCATGTACCGTTGGTGTATG
GGTTTCCTACTGCCCGAACCAGAAAGCCATCATCGTGGATACAGAAGGTC
TGCTTGGtgtttcagaaaatgcaaataagAGGATGAGATTGTTGATGAAG
ATTCTTGCTGTCTCAGATGTTGTGATTTATCGTACAAGAGCAGAACGCCT
ACATTCTGATATGTTTACTTTCTTGGGTGATGCTTCAGAAGCCTACatca
aatatttcacaaaagaTCTTCAATCAGTTCAACAAAGAGGCCATATGGAG
AATGTTCCCTTGTGTAGCTTAGGTCCCTCTATTGTTATCTTTCAAGAGAC
ACATTACACTACACCACTTGGTTTTGAAAATGATCCATCAGAACAGTAAG
TAAATTATGACAGAAGGTCAATTTGTACTCTCTGGAAAGACTTCTTGAAT
TAATTCTctccaaaaacttttaaaacttggCACNCTCTGGAAAGACTTCT
TGAATTATTTCTctccaaaaacttttaaaacttggCACTCttttttgtaa
acgaaaaagaGGGGTTGATAACAAAGCTACACAGCTTTTCACCTTGAGTT
TACACAAAAGTAACATAGATTTCTCTGAATAATCTTTTTGGTATATTCGT
TCAATTGAGCACCAATTGATGCTGAATAATCCAAATACATCGATTTGACA
ATCTTAGAATacttcaaatttgtttttattttcactttacAGTGATAACA
GTCCAGAAGAGATTTTGAGatccaattttttcaacattggACGCAATCCA
GCTGCATTTAGTTCCATCAATTATGTTGGTACAAGAACGACTACCCAATC
CACTGATTTCTCTATCCTCTTGAATGAAGTGAAGAAAAACCTCAAGAACA
AGACCGTTCGTTCTGCAAGACCTGTTTCTGTCATTTTCAATGCTTTGATg
gtaaatttgattttaaagattatgttcttttttatatgatataaaagttg
ttctttcttttgtttaaaaatgctgtctAAGCAATTGTTAGGAGAtacat
taaattaaattttaaaataattaaaaaaataactaTTAAGAACGTTCTTA
AACCTTTGGAAATTGTTATTCTTCTACAATTCTTTCTTCTTTAGTTCTAT
TGCCAATAAGCTGAGTGTTTGTATTTAAGCGCACTCCTTTGAGTCTGAGA
TTTATATCAGTGGATCGGGCGTGCACTGACGATAACCACTCTTTACCTTT
ATTGTAGTTTTTGAATGACAAATTCGGTGATGATATCAATGACATCCTAC
CAAACAGTTTCCCTGATGAATATTTTACATGTGTTTCAAAATGTTTATCA
TGCAGGTATGTTTAATGTTCTTGGAATATCTATTCAATTTATAGAGGATT
TTAATCAGTGTTAATCCTTGTTATTCTGTTGTAATGGAATCCTTAAAAGA
ATTTGGAAGTAGAACTGCGCAAAATCTAGCAGAACTTGTTTATAGAATCC
TTAAAATCATTTTACTGTGGACCGAACTGACTTGATCACTGTACGGAACC
AATTCTATGTTTTTTTCGAAAGATATCAATCAACTTTCGATCCAGCTCCC
AAGCAACTCTAGACATTTCCAACAGAACCTTCTCCAATACCTTCCATTCT
TTCTAATAGTGCTCGATGTGGAAAAAACATGAATCAtgagaaagaagaga
aagaacatCGCTCAGAACAAAAGTGTACATATCAAGCACAATTTGACAAC
AAAGTATATACGTGCAAGGTACGTCTGATTTTTATCTACTTTTATTTTGA
AGTAATGTCAGTAAAAGTTTTGCCGTCTCGGTCCGCTTTTTGTCTCAGCT
TTGCCAGCTAGTCTAAAAAGTTAGCAAAAAATCTATAGAATCTGTTGGAA
TTTGTTGTGTAAagttaatttttatttgatacgctacttttgttttcatt
tgttttgttAATCGCGAGTGTTGGTAGAGTCTTTTATTATAAACAAGGCA
ATAGTCGACCAATTTTAAACCTGTTTATTTCCTAGGCATGCCATGAGAAA
GGCGTTGAATCACTTGTGATACCCAAAACTGCTGAAACTCAAGATTCTCC
CTTGGTTGGTCTTGCAAAATATGCTTGGTCAGGGTATGTTCTCATTGTGT
TTGTGATTTGTATTAAGAAAAGAAGTTGTATTTAGAATGCtgtgttttga
tttctttttcaatgtatttttcattaaaagttatACATAACATTGAATTC
GCACctttaaaattaagaaaattgcaGAGAAAAAGATTGCATTTTGTTAA
tacttttaaattaaaatagttTTCAGAAGATACACTAAAATCGactgttt
gttttttaataCACGATACTGAATAGCATTTGGCTTCCAGAGCAGAACAG
GCTCCTTACATTGTTATTTCACAAAATAATTtcactaaaaagttcaaaag
tgATTAATTCTGACGACGttttatttttggaaagtttttctttttagatt
ttgtCTGGATTTCTCCTATACCTTTCAAACTGGCTGTCTGTAGATAATCC
AAGTTATATTCAAATACACGATTTTCGTATTGCCAGTTAGATGAGCTTGG
ACTTAAAATGGTCCGCTAAATAAAAGATTTGTAATGATTTTCGtccagaa
tcacaaaatatggTCCAAACAAGTTTTtctatcttttaattttttggagg
ATTGTTTCTTGAATTTACATCCATAAGACTTTTTGTACAGTCGTTTGTCA
TGCAACGAATAATGATACAAAAATTAGTATCTTTTCTTTTCCCTAGATAT
GTTCTTGAATGTCCAAAATGTGGTGTTATTTACCGAAGTCGACAATTTTG
GTATGGCAATGGTGAAGTAGAGAATTTTGTGCGCATTGAAATCAAACATG
TCTGGCCAGGGgtaagattttgatattttctgttCATCGCGTATACAAGT
CTCTCATTCCAAGCTTCTTCAAATTTGTAGCCAAGAGTGTCGTGAGAAGT
ACATGAATGCAAAGCTCATAAAGAGAACTTTACccaaaaagctaaaactt
taCTTTAGTTTATACTGAATTGTGTCTAGAGCTTTTTAATTCTGTTNAAA
CTTTACTTTAGTTTATAATGAATTGTGTCTAGAGCTTTTTAAATATGTTG
ATGAACGATTTGCTTGAAAATAGACTCACTTCACAATCAATGCATTCCTC
TACCACATTTCGaaattataagaatattaatTCGTTTGCAGACACGACTT
CCAAACACTAGTCAAAATTCAGCACGACGCATTTTGGATGGTATGATGAA
CTTGGCAGATGCAATCACCAATGTTAGTGCAAAACCTACTAAAGCTGTCA
CCAGTTGGGTTACTGATAAAGTTGCTCCAACCTACTGGACACCTAACTAT
CTCATTATTGTAAGttcttttgttatattttcgaatatattgTGTCTTTG
AGAGATATGTTGTTGAACGATGGAAAAAATTGTGATCCGCTCTCaatgat
atttttatttgtgTCTTTGAAAGATAAACTTTTGGAATCTATAATGTATt
aaattggagaaaaatttgTCCAATGGCCCTGAATGGCCATGCTTAAGAAG
ATGTTGTAAAATATGAAAGATTCGAGGTTTTTTCTTTTGGACAAACTATT
CAAATTAAAAGGGCTATTCAAATATGCAATTTCTAGGTAAAAATTAGCAT
GGTAAAAAGGGTGTGTCATTTGtcgattggaattttttttgtctaAAGTA
ATTATATGGGAAGTTCATATAATTCCACtgttttcaaagaaaagttttgt
ttatttttgagtAATGAGTAACTGCGAGTTTGAAAGTCGTTTTTTCCTCC
AATTAATATCAGACCTGGTGGGAGGGCAGAAGGCTGGAAGaaagaatgaa
gaagaagaaaacaatcCATTCATGTTTTctccttaaaatgttttttataa
gaaaatcacTTTCAAGAAAGTACTTGATTAAACCTTAAACTTTGCCAGCC
AATCTCTTGGATGGACAAAAAttcttcgaatttttttacaatattatggt
gaaaatatttgaaatatatCTCACTTCGATTTTTCACCCTCTCTAGGACT
GTGCAAAATGTGGCCATGATTTTGAAGAGACAGAGAAGAAACATCATTGT
CGAGCCTGTGGTCGAGGTTATTGTGACTCGTGTACACAACATAGGATTCC
TGTACCGGACAGAGGCTGGGGAGACACGCCCGTTCGTGTTTGTGATGATT
GCTTCACTAAATCCGGACAAGTCGATCAATCGAGTGTGCAGAAGAATTCG
ATCGATATCAGGTAAGAAAATTTCCAGTTTGTTAAATGTGCAAGATTTTG
AGTTGCAAACATCGTTAAgaataacacccccttctcactgaCACGGTAGG
ATTCTTTCAGCCTggaataaaaataacggactgaaattcgatggggatta
acattcccatattttttatggcttgggatttcaattcttttgttttcaag
tcacaaaattcagtggggatagaaagaatagtataatattttgcagtgaa
gattggtttatttgattattttcagtggggataaaaattggaggataatt
ttcaactatggacgatatttttgccaatttttccagtgtgaaggggtccc
agtaggtctgtgagaaggggtttaAGAATAGTACACGAaggaatctttta
aaaaaatcgcaaaagctcaaagtttcaaatttaaaaactgAACCACCTTC
ATATTATTTGCATGCTTTCTTTTACCAAAAACGCAATGTTAAAATCGATA
ATGACGACGATATAGTACCCAAAAGGCAAGGGTTAGACCTATGGTTTtcc
tagaaaaaaattaaagccGGTTCTCGGTATAGTCTAAATCACATCCCTTT
GTAAAACCGCAGGTCTAAGGAGCtagaatccgttagtggatgctaGCAGC
AGTAGAATTTTCTTGTGATATCATTGGAATATCTTTATAGATGCCTTTTT
AGGAATTCtagctttacagatctgtgaatATTATCAAATCGAAAATTGAC
CATCTTTTCTCTCTCCTTCCATCCATAGTGAGTTGTTGGAAGCGATTGAT
GATGACCCTGAAATCGATACAGGTGAAATGGTAGCCATCAAAACCGCCAA
AAACATACCCACCCGCCACCCGCCTGAAGTTCTCACAACACGGAAAGTAA
CCGAGCAAGTCCAGTCCACACTTTCATTCCTATCAAGCTCTTTAGAATAT
CCCTTGGAGTATTTAGTGGATTCGGCCAGACCTGATTATTGGGTTCCAGA
TTCCAAGATTTTGAATTGCCACTCATGCGAAATGGAATTCTCAAAAAAAG
ATTCTAAGCATCATTGTCGCAAGTGTGGAAAGGGCTTTTGTGATCCATGC
TCAAAGTCTAGAGTGCCGGTACCGAGTCGTGGTTGGGATTATCCAGTTCG
TGTTTGTAACGGATGTTCGTTGAAGAAAGGTCCTTTGTAATGATTGAGGG
TATGATGTCATCATTTATAATGATCTGTTGATGGTTGGCTTTATTTGGCT
ttattatgttttgatttaactttctGCTTAAAAAAAGATATCTACAACCT
ATGCTGTTGTTTTCCATATAACTTTATCGTGATGCTCTTGAATGTAAAGT
ATCCACACATACTTGAagcttttttgaatttattcaaAGCTGTGTGAAGA
GCATCTCGCTACTTTTCTTCATGTCTTTTTTGTATCTCTAAACTTGTAAC
TAGAACTGTATGAATTGTCATCCCAAAGTTGTTCGTTGTCCCCTAGGACC
AGTTATGAATCCTAGTGGGACACTTCTTTGGAAATGATGAAGTAGACTTA
GCTTTTATATCCTAAATCATAATCATAATTTTTATCGCTGTACTGTActt
tactttcgtttttaacccTAGTTTCTAAGGGTGCTTGTTCCTTATGTTGA
GTTAAGTAGTTAGAGAATtgtgttgttttttaattttttacatCACTTTG
TGGCTACTGAAAGGTCCCGTCGAGTTTCTTCAAGTTTTAACCAAATGGGG
CCAGATCAAGGATCACAGacgggtcaaattaaattctcttTACCTTATAA
TTACGAAGCGTTTCAGTTTCATTTTTGAGATGAC

Coding sequence (CDS) from alignment at sc0000011:141382..153715+

>TCONS_00001570 ID=TCONS_00001570|Name=TCONS_00001570|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000011:141382..153715+ (Clytia hemisphaerica)
ATGGCACAGGTTTCCTGTTCAAATGGTTTTTCTTCAACAGAGGAAACTTC
CAAGATGGCTGCCGACCAAGCCTTGCTAAAAAACTCAAATGCTAATATCT
TTGGAGATATTGAATCCATGAGATGTGAAAAAtgcaaaagcaaaaagaaa
aaggtgACCGTTGTCTGTATTGACTGTGGAGAACTTGCTTTATGCAATGA
TTGTAACCGCAAAGTACATGAAAATAATAAAGTTCAACATCAGCTGCATG
AATTGAGACCAAAAACACAGACTCTAGCCAAAGAAAAGCAAATTAATGGA
ACATTGAATGGATCAATTAATGGAACAATTCATCACAAGAAGAACAATAG
TATTGCAAAGCTTGACATAGTGCACAATGACAAACCAAAAAGTTTATTAT
TGATTGACAGTACAGAAAGATTGCAGGTAACAAAAGAGGGTGATTTCAAG
CATTTACTTGGTTGTGATGATGATCCTCGAGTGAAAGTTGTTTCAATCTT
TGGAAACACAGGAGATGGAAAATCACATACTCTGAATCATACATTTTTTG
ACGGCGCTGAAGTATTTGATACATCACCATCCCAAAAATCATGTACCGTT
GGTGTATGGGTTTCCTACTGCCCGAACCAGAAAGCCATCATCGTGGATAC
AGAAGGTCTGCTTGGtgtttcagaaaatgcaaataagAGGATGAGATTGT
TGATGAAGATTCTTGCTGTCTCGGATGTTGTGATTTATCGTACAAGAGCA
GAACGCCTACATTCTGATATGTTTACTTTCTTGGGTGATGCTTCAGAAGC
CTACatcaaatatttcacaaaagaTCTTCAATCAGTTCAACAAAGAGGCC
ATATGGAGAATGTTCCCTTGTGTAGCTTAGGTCCCTCTATTGTTATCTTT
CAAGAGACACATTACACTACACCACTTGGTTTTGAAAATGATCCATCAGA
ACATGATAACAGTCCAGAAGAGATTTTGAGatccaattttttcaacattg
gACGCAATCCAGCTGCATTTAGTTCCATCAATTATGTTGGTACAAGAACG
ACTACCCAATCCACTGATTTCTCTATCCTCTTGAATGAAGTGAAGAAAAA
CCTCAAGAACAAGACCGTTCGTTCTGCAAGACCTGTTTCTGTCATTTTCA
ATGCTTTGATgTTTTTGAATGACAAATTCGGTGATGATATCAATGACATC
CTACCAAACAGTTTCCCTGATGAATATTTTACATGTGTTTCAAAATGTTT
ATCATGCAGTGCTCGATGTGGAAAAAACATGAATCAtgagaaagaagaga
aagaacatCGCTCAGAACAAAAGTGTACATATCAAGCACAATTTGACAAC
AAAGTATATACGTGCAAGGCATGCCATGAGAAAGGCGTTGAATCACTTGT
GATACCCAAAACTGCTGAAACTCAAGATTCTCCCTTGGTTGGTCTTGCAA
AATATGCTTGGTCAGGATATGTTCTTGAATGTCCAAAATGTGGTGTTATT
TACCGAAGTCGACAATTTTGGTATGGCAATGGTGAAGTAGAGAATTTTGT
GCGCATTGAAATCAAACATGTCTGGCCAGGGACACGACTTCCAAACACTA
GTCAAAATTCAGCACGACGCATTTTGGATGGTATGATGAACTTGGCAGAT
GCAATCACCAATGTTAGTGCAAAACCTACTAAAGCTGTCACCAGTTGGGT
TACTGATAAAGTTGCTCCAACCTACTGGACACCTAACTATCTCATTATTG
ACTGTGCAAAATGTGGCCATGATTTTGAAGAGACAGAGAAGAAACATCAT
TGTCGAGCCTGTGGTCGAGGTTATTGTGACTCGTGTACACAACATAGGAT
TCCTGTACCGGACAGAGGCTGGGGAGACACGCCCGTTCGTGTTTGTGATG
ATTGCTTCACTAAATCCGGACAAGTCGATCAATCGAGTGTGCAGAAGAAT
TCGATCGATATCAGTGAGTTGTTGGAAGCGATTGATGATGACCCTGAAAT
CGATACAGGTGAAATGGTAGCCATCAAAACCGCCAAAAACATACCCACCC
GCCACCCGCCTGAAGTTCTCACAACACGGAAAGTAACCGAGCAAGTCCAG
TCCACACTTTCATTCCTATCAAGCTCTTTAGAATATCCCTTGGAGTATTT
AGTGGATTCGGCCAGACCTGATTATTGGGTTCCAGATTCCAAGATTTTGA
ATTGCCACTCATGCGAAATGGAATTCTCAAAAAAAGATTCTAAGCATCAT
TGTCGCAAGTGTGGAAAGGGCTTTTGTGATCCATGCTCAAAGTCTAGAGT
GCCGGTACCGAGTCGTGGTTGGGATTATCCAGTTCGTGTTTGTAACGGAT
GTTCGTTGAAGAAAGGTCCTTTGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000820	XLOC_000820	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001570-protein	TCONS_00001570-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000011	supercontig	sc0000011:141382..153715 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81688	4.15168	2.84309	2.98962	30.369	23.0127	28.039	33.9263	26.9006	24.5154	34.3303	23.116	33.4845	28.317	14.7711	21.2388	33.6607	46.2178	23.25	29.9538	43.0652	44.2718	13.5276	20.3548	77.6742	64.6986	35.5238	25.4793	18.6686	21.4238

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000306	Znf_FYVE
IPR013083	Znf_RING/FYVE/PHD
IPR017455	Znf_FYVE-rel
IPR011011	Znf_FYVE_PHD
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding

Blast

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BLAST of TCONS_00001570 vs. Swiss-Prot (Human)
Match: ZFYV1 (Zinc finger FYVE domain-containing protein 1 OS=Homo sapiens GN=ZFYVE1 PE=1 SV=1)

HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0
Identity = 351/670 (52.39%), Postives = 461/670 (68.81%), Query Frame = 1

Query:  625 DKPKSLLLIDSTERLQVTKEGDFKHLLGCDDDPRVKVVSIFGNTGDGKSHTLNHTFFDGAEVFDTSPSQKSCTVGVWVSYCPNQKAIIVDTEGLLGVSENANKRMRLLMKILAVSDVVIYRTRAERLHSDMFTFLGDASEAYIKYFTKDLQSVQQRGHMENVPLCSLGPSIVIFQETHYTTPLGFENDPSEHDNSPEEILRSNFFNIGRNPAAFSSINYVGTRTTTQSTDFSIXXXXXXXXXXXXTVRSARPVSVIFNALMFLNDKFGDDI-NDILPNS--FPDEYFTCVSKCLSCSARCGKNMNXXXXXXXXRSEQKCTYQAQFDNKVYTCKACHEKGVESLVIPKTAETQDSPLVGLAKYAWSGYVLECPKCGVIYRSRQFWYGNGE-VENFVRIEIKHVWPGTR-LPNTSQNSARRILDGMMNLADAITNVSAKPTKAVTSWVTDKVAPTYWTPNYLIIDCAKCGHDFEETEKKHHCRACGRGYCDSCTQHRIPVPDRGWGDTPVRVCDDCFTKSGQVDQSSVQKNSIDISELLEAIDDDPEIDTGEMVAIKTAKNIPTRHPPEVLTTRKVTEQVQSTXXXXXXXXXXXXXXXVDSARPDYWVPDSKILNCHSCEMEFSKKDSKHHCRKCGKGFCDPCSKSRVPVPSRGWDYPVRVCNGCSLKKGPL 2619
            +K  S LL+D  E +QVT E DF   L C  D  +KVVSIFGNTGDGKSHTLNHTFF G EVF TSP+Q+SCTVGVW +Y P  K  ++DTEGLLG + N ++R RLL+K+LA+SD+VIYRT A+RLH+D+F FLGDASEAY+K+FTK+L++   R  + +VPL +LGP+++IF ET +T  LG  + PSE    PE++++  F  +GR P AFSSI+Y GTRT    TDFS L   +++ L+N T RS R   VIF AL  L+D+F  +I +D + +S  FPDEYFTC S CLSC   C K+MNH KE   H ++ +C Y  Q+DN+VYTCKAC+E+G E  V+PKT+ + DSP +GLAKYAWSGYV+ECP CGV+YRSRQ+W+GN + V+  VR EI HVWPGT      + N+A+R+LDGM  +A +++ +S  PTKAVTSW+TD++AP YW PN  I+ C KC   F++ + KHHCRACG G+CDSC+    PVP+RGWG  PVRVCD+C+           +  ++ ++     +DD    + G ++A                  RKV E VQ+TL  + ++++ PL  + D+ARP YWVPD +IL+CH+C  EFS K SKHHCR CG+GFCD CS  R  VPSRGWD+PVRVC  C+ K G L
Sbjct:  146 EKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGL-DVPLSTLGPAVIIFHETVHTQLLG-SDHPSE---VPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY-----------EARNVQLAVTEAQVDD----EGGTLIA------------------RKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL 777

The following BLAST results are available for this feature:

BLAST of TCONS_00001570 vs. Swiss-Prot (Human)

BLAST of TCONS_00001570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZFYV1	0.000e+0	52.39	Zinc finger FYVE domain-containing protein 1 OS=Ho...	[more]

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TCONS_00001570 (transcript) - C. hemisphaerica