TCONS_00001613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001613
Unique NameTCONS_00001613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001613 ID=TCONS_00001613|Name=TCONS_00001613|organism=Clytia hemisphaerica|type=transcript|length=2848bp
CTACTGTGTTCATTAAACTTGAGAAAATTAATGTCAGATTAATTTGTGGT
GCACCGAAAAtgtcttttcaaatttttaccaatctttttttaataagaaa
tagATACGAAAAATGTCAAGGTTAATAAGAATTTCAAgagatttgatgaa
aaataatctgcaacatgcTTTCAAAAATAACACATGGTATCAAACTAAAT
CAAGATGTTTATCAATTGCTGCAACTCTACAACATTATGGTCCATCTGTT
TTGGGAGCTGACCAAGTTAAAAAGATGTATGAGCAGAGTTTGTCTGATCC
TGAAACATTTTGGGGAGAACATGCACGTAGTAAATTAAACTGGATCAAGG
ATTTTGAACAAGTTTCTAACAGTGACATGAATACTGGGAAACATGAATGG
TTTTTAAATGGAAAGATCAATGTGTCAGaaaattgtCTGGACAGACATGT
TGCTAGAGATCCTGATGCAACTGCACTGATTTGGGAAAAAGATGAACCCA
ATACGCATGTGAAAGTATCTTACAAaGAGCTTCTTGAGAAAACTTGTCAA
GTAGCAAATGTTTTGAAACGAAAAGGTGTCCAGAAAGGAGATACTGTGTG
TATTTACATGCCTGTATCACCTATCGCAGTTGCTTGTATGTTAGCATGTA
CTAGAATTGGTGCTGTTCATAGTGTTGTATTTGCTGGATTTAGTGCTGAA
GCTCTTTCTGCTCGAATAAATGATGgTGGCTCCAAAATTGTGATCACTGC
AGACGAAGGTTTGCGTGGATCAAAGAGAATCTCTTTAAAGAATACAGTAG
ATAAAGCTTTGGAGAATTGTTCTGTTGACAATGTGTTAGTGTACCAACGA
ACTGGAGCTGATGTGCACATGCAACATGGAAGAGACCTTTATCTAGAAGA
GGAAATGTCAAGTGAAAGTATTGAGTGTGTACCAGAACCAATGGACAGTG
AAGATCCACTTTTTATATTGTACACATCAGGAAGTACCGGAAAACCCAAA
GGTGTTCAACATTCACAAGCTGGATATTTGCTTTACGCCATGATGACCCA
TAAATATGTATTCAAGTATGAAGTTGGTGATATATACGCATGCGTAGCTG
ACATTGGTTGGATTACGGGACATTCATATGTTGTTTACGGTCCTTTAGCA
AATGGTGCAACATCTGTTTTATTCGAAAGTGTTCCTACGTATCCAGATCC
TGGGCGCTATTGGGAGATGGTAGAGAGGCTAAAAGTCAACCAGTTCTATG
GTGCACCTACTGCAATTCGCTTGTTATTGAAATTTGGAAATGAATTTGTG
GAGAAATATGATAGAGATACATTGAAAGTGTTGGGAACAGTTGGTGAGCC
AATAAATGAAGAAGCATGGCATTGGTATTATGATATTGTTGGACAAAAGA
AATGCCCCATTTCTGACACTTGGTGGCAAACAGAAACTGGAGGTATAGTG
ATATCCCCAGTACCAGAACAAGATGTTGTTCCGCCTAAACCAGCATGTCC
AATGTTCCCTTTCTTTGGTGTAAAACCTATTCTTCTGGATGAAGAGGGTA
AAGAGCTGCATGGGAATGATGTGAGTGGATTGTTATGTTTGGGATCATCA
TTGCCAGGGATGGCCAGAACCATCCATGGAGATCAAGAACGATTTCTAGA
CGTCTACTATAGACCATATCCAGGTTATTACTTCACCGGGGACGGAGCAC
GTCGTGATGCAGAGGGCCACTACCACATTACTGGTCgtgttgatgacgtc
atcaatgtcAAAGGTGTTCGACTGGGAACAGCTGAAGTTGAAGACGTCAT
GGACAACCATGATGCGGTGGCAGAAACAGCAGTCGTTGGATATCCTCATG
AAATCAAAGGACAAGGTGTGTACGCATACGTGACGTTAAAAGAAGGGATC
TCTGAATCTGAAGAAGATATCAAGAAAGAGTTACAAGCAATGGTCAAAAG
TTCTATTGGCTCTTTCGCCGTCCCCGAAATGATACAGattGCACCAGGTC
TTCCAAAGACACGGTCGGGGAAAATTATGCGACGTATATTACGTTGTGTT
GCCGCTAACAAGCCCGAGGATGTGGGAGATATCAGTACTCTGGCTGACGA
TTCTGTTGTCGAAGAAATCATTGCTAATCatgaaaaacttttacaaaaaa
tgaagaaatagaGCTTGGAGCTGATTAATATTGACCATCGATGTTTGGCT
GGAATTTCTTGATATGTTAACTGTGATGGTAGGATGAAAGTCCTTAAGAC
AATAAGTTCAGTTTGCACTCATGTTCAGTTCTCAAGGAAGGGCAGCAGAA
ATTGATAGTTCTACACTAGACAAGTTATTTGATTTACCTAAACCACCTTA
TTCTCGAAGACCCGGTGTGGCCCCTCCCACTGGCAAAAATctgccaaaat
atcgtcccaagTATAAAATTATATTCTTTCTTGTTGTCCCCCCcccctca
ctgcaaaatatttgttcaactttttcaattttcaccgaattttctgactt
aaaaacaatggaGCTAAAATCCCCAGCTATAAAAAGATGGGTAATATATC
AATCCCTatcgagtttcagttcgttCTTTTACCCCAACTGGCTGAAATCA
TACGGGTCTGAGAAAATTGGGTGTTCTAATGTTGAAGAATGACGATTCTC
TTTGTCTTTGCATAGAATATCTATCTTACCTGTCGATGTTTTTCtccaat
caaaatatttggGTTTTATACAGGGTTATCGTAATATTTAGTATAGTTTT
TTTAATATTCACAATATCATAAAGGTGTCATATATTTTATAGATTTATAG
ATTTtgtaaacaaatgatttttttgtaaataacaTTAGCTAAAAGCAC
Run BLAST on NCBI

protein sequence of TCONS_00001613-protein

>TCONS_00001613-protein ID=TCONS_00001613-protein|Name=TCONS_00001613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=682bp
MSRLIRISRDLMKNNLQHAFKNNTWYQTKSRCLSIAATLQHYGPSVLGAD
QVKKMYEQSLSDPETFWGEHARSKLNWIKDFEQVSNSDMNTGKHEWFLNG
KINVSENCLDRHVARDPDATALIWEKDEPNTHVKVSYKELLEKTCQVANV
LKRKGVQKGDTVCIYMPVSPIAVACMLACTRIGAVHSVVFAGFSAEALSA
RINDGGSKIVITADEGLRGSKRISLKNTVDKALENCSVDNVLVYQRTGAD
VHMQHGRDLYLEEEMSSESIECVPEPMDSEDPLFILYTSGSTGKPKGVQH
SQAGYLLYAMMTHKYVFKYEVGDIYACVADIGWITGHSYVVYGPLANGAT
SVLFESVPTYPDPGRYWEMVERLKVNQFYGAPTAIRLLLKFGNEFVEKYD
RDTLKVLGTVGEPINEEAWHWYYDIVGQKKCPISDTWWQTETGGIVISPV
PEQDVVPPKPACPMFPFFGVKPILLDEEGKELHGNDVSGLLCLGSSLPGM
ARTIHGDQERFLDVYYRPYPGYYFTGDGARRDAEGHYHITGRVDDVINVK
GVRLGTAEVEDVMDNHDAVAETAVVGYPHEIKGQGVYAYVTLKEGISESE
EDIKKELQAMVKSSIGSFAVPEMIQIAPGLPKTRSGKIMRRILRCVAANK
PEDVGDISTLADDSVVEEIIANHEKLLQKMKK
Run BLAST on NCBI

transcript from alignment at sc0000011:898503..912481+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001613 ID=TCONS_00001613|Name=TCONS_00001613|organism=Clytia hemisphaerica|type=transcript|length=13979bp|location=Sequence derived from alignment at sc0000011:898503..912481+ (Clytia hemisphaerica)
CTACTGTGTTCATTAAACTTGAGAAAATTAATGTCAGATTAATTTGTGGT
GCACCGAAAAtgtcttttcaaatttttaccaatctttttttaataagaaa
tagATACGAAAAATGTCAAGGTTAATAAGAATTTCAAgagatttgatgaa
aaataatctgcaacatgcTTTCAAAAATAACACATGGTATCAAACTAAAT
CAAGATGTTTATCAATTGCTGCAACTCTACAACATTATGGTCCATCTGTT
TTGGGAGCTGACCAAGTTAAAAAGATGTATGAGCAGAGTTTGTCTGATCC
TGAAACATTTTGGGGAGAACATGCACGTAGTAAATTAAACTGGATCAAGG
ATTTTGAACAAGTTTCTAACAGTGACATGAATACTGGGAAACATGAATGG
TTTTTAAATGGAAAGATCAATGTGTCAGGTATGCTGTATTTATACTTGTG
GTGCATTTTGGGGAtctttttgctattttttccagGCATACCAGCTTTTT
TGCAGCTAAAGATGTGTAGACAATACACAACAGTCTTGGGACAGATCACC
TACCAAGTTGAAGCTTCTTCTTGTTTGTCTTTCCTGCTATAGAGTGGCCA
GTAGGAAACTTTTCACGGGAATGAGCAAGTTTAGCCATCCTACATTGTAT
CAGTTTTCatactttttcaaattatgtTGATGTAGCAGTAGTGGaagttt
tttatacaaattgtcATCTTCTGCTTCTGTTTGAGTTtgaaagaataatt
ttctcactGAAAAATACTTGTTTGTGATATAACTTTATATAAAACTTTgg
ttttttacagaaaattgtCTGGACAGACATGTTGCTAGAGATCCTGATGC
AACTGCACTGATTTGGGAAAAAGATGAACCCAATACGCATGTGAAAGTAT
CTTACAAGTATGATTTTTAGcgtaaaaatgtgaaaattgcTGAATCTTGA
TATAATTGATTATCGTCATAATTTATGATATTATGTCATCTTTTACAATG
GGCATCTACAGTACAGTTTTACAGGAACCAGgacagaatattgtttgttt
ccATTCCAGgattatgaaaaattatttcagcAGCCACCACCATAATAACA
AACCCCTCCTAAGAACTAAGCTACcctgaaatgttttcaatttctCAAGC
ACCTTTTAAAGCTATAGGTATAACCTGAAGAATGAGTTAGTAATGTCAAA
TGACCAAAAGTCTATTCCACTCTTTCCTGTTAAGTGGAAACCAATCTTAA
TTGGAAATTCCACATGGTAGCGAAAAAGAGTGCACTCTTAATACACTTTT
GTTCCTCTCTGATTAATTTTGTTGAATGGCTTAGTCCTTTAAAACATTTA
CACTGTCACTACTTGACAAAAatagctttttctaaaaaatctttttttta
gaGAGCTTCTTGAGAAAACTTGTCAAGTAGCAAATGTTTTGAAACGAAAA
GGTGTCCAGAAAGGAGATACTGTGTGTATTTACATGCCTGTATCACCTAT
CGCAGTTGCTTGTATGTTAGCATGTACTAGAATTGGTGCTGTTCATAGGT
TAGTACATATAATATACATacattaattcattattttacCCATATTCAAT
agctttaaaaatttcaaaatcatttttttaaacagcttttttgtGGTTTC
ATTGTATAGCAAAGGTTGGTGCATTATTACATATTAGATACTATTTTGgg
gattttttcttcctttccttctttgaaattaatttttatatacatttttt
aGTGTTGTATTTGCTGGATTTAGTGCTGAAGCTCTTTCTGCTCGAATAAA
TGATGGTAAGCAATCCATTTATTGGtggctttaaaatttttgaataggTA
TTTATCTTGTCTTAAAACTTAACAATATAGTGACAACATGGCAAAAGCCA
ACCTCAATTTAATAGCCAACCTCTACCACTTGCTggagtgattgacccca
aaccCTGACACTTTTTCCAGCATAGACTGAATAGCTAAGTTGTTAGTGCA
GTGCACTAGCAATGTGGAATTTGTGAGTTCGAATCTCGCTTTAGTCCTCA
GTTTAGCAACTCGCTACTAGCTTGAGGTTAGTGCACTAAATCCTGTTGGC
ACTATTATGCAATTATGTGGTAAGTAACTTAAGTATTCTTTTTAGGTCTT
TGAAAACTACTAAATaaccttttttgataaaaatcattATGTAGAGATTT
TCCAGCACTTTTCACTTTTGTTAcgttttttatctatttttaggTGGCTC
CAAAATTGTGATCACTGCAGACGAAGGTTTGCGTGGATCAAAGAGAATCT
CTTTAAAGAATACAGTAGATAAAGCTTTGGAGAATTGTTCTGTTGACAAT
GTGTTAGTGTACCAACGAACTGGAGCTGATGTGCACATGCAACATGGAAG
AGACCTTTATCTAGAAGAGGTTGATGACTtaagtttttggacctaccctg
gtggggtggaggtcctataaattaacctgtgttcgttcgttcgttcgtct
gttaccaacttttctcaggattgaatcataggaataaCATAGGAGTAACA
GCGTCGATGAGTtaagttttttttgttaaaagaatCTTTTAGGATCCCCC
CTAAAAAAAACACCTAAAACGATCACATTTTCAACCTTCAATCTTTTTAT
CAGTTACAAATCCTTACAGCTCTTTTACCCAGAAGTTAAATGTGCTTGTA
ATATGTCACACTGTGTATACTACAAGGCGTATAATCTGAAAACCCCCCTT
CCACCTTGGTTTGGGTAACGTAAATTCATAATAAGTCCTTAGTTCAATTT
CTGGATTCTATGCTCAACATAAATCACCACTTGCTTTATCTATATTATTA
CAATCATAGGAAATGTCAAGTGAAAGTATTGAGTGTGTACCAGAACCAAT
GGACAGTGAAGATCCACTTTTTATATTGTACACATCAGGAAGTACCGGAA
AACCCAAAGGTGTTCAACATTCACAAGCTGGATATTTGCTTTACGCCATG
ATGACCCATAAAGTAATTtgtaactttcttttcaaaatgaaattgaaatc
ttTTCCTATTTTGGTTCTTCTGACAGACATTTGAAGAATGAATCATATTT
TTGCTTAAGAGGATAAGTAAGGGAGAGACACTTCCACTGTAAGATGTTCC
TAGATCAATTGGAGATTGCTTTGAGCTGTCTGTAATAAACACCCCCCCTT
GTGATATTTTTTGCGTTACAACATGTCAAGATTAGTTATGAAAAGTTTCT
CAGAAATATTGCAAAAGTTAAAATGCAACTAAAAAGAAGACTGCCTATCA
TGCTCCAAACGTCCAGTTTCTGATTTTCATCTTATTTACTTTTCAGTATG
TATTCAAGTATGAAGTTGGTGATATATACGCATGCGTAGCTGACATTGGT
TGGATTACGGGACATTCATATGTTGTTTACGGTCCTTTAGCAAATGGTGC
AACATCTGTTTTATTCGAAAGTGTTCCTACGTATCCAGATCCTGGGCGCT
ATTGGGAGATGGTAGAGAGGCTAAAAGTCAACCAGTTCTATGGTGCACCT
ACTGCAATTCGCTTGTTATTGAAATTTGGAAATGAATTTGTGGAGAAATA
TGATAGAGATACATTGAAAGTGTTGGGAACAGGTACGATGTGTTAACTTT
AGCAAAAGTATATCAcattaatttaaaatttcactaTGCATATTTAGGAC
GATAAAACATAAATCTTTAATGCTCCAAAAATGCATTTCCGAGGGGAGGC
AAATATATAGGTAAAAATAGATTGCTTGGTATGTGTGGACCTTAGGCGGC
TTTTGACCTTCTTGAGTATATTGCACTTCtatgaaaaatttctttcttat
tctttttcagTTGGTGAGCCAATAAATGAAGAAGCATGGCATTGGTATTA
TGATATTGTTGGACAAAAGAAATGCCCCATTTCTGACACTTGGTGGCAAA
CAGGTATCTTTTGAACGCTTATAATAGTAACAAAGAAAAACAGAGCTTCA
TATTTGCACGTAACTAATAGTATCTGATAGTATTAATAGTTACTTCAGTG
ACTTCAGCGACTTTTCTGAGCACTTTTTAATGTCCGTATAccggccaaaa
tactcaatccaaaattgaatttttgcaGCTGAATCCAAAACAAATATATT
TTCTAGcaaaatgtcacttttttgttgtttacaagcaaaaataattaata
ttaTCAACatattcaaaatttatcaaagcTTTATATCAATCTGCAAATCA
ATATGCAAATTTATGAGACGATCCTTTCGGGCATATTAGAAACTCGATCT
AAAAACGGTCCCAgctcaaagtgcttagaaaaatccctgttACTTCTTTA
TtacgggaagaaattttggcaggaatttaatttaacGGATAactgcaaaa
ataaattttaccaGGAACActtaattttgcagattttggGTAAATTCGCA
GaatccaccaaattttctttccatcaAAGTTTCTTTCTTTAAGGTAGcca
aaaaaatagtaaaataagggatgtttttattaaaatgaGGAACAAAAGGT
AAATAGAGTTATTACAAGACAACCAATAAGTAACAAGTGCTCAAACGCAA
GTAACAAgtacatgcttttttataagaatactgtTTTCTTAGCTGAgggt
aaaatattcttatagattTTTCCAAACTaaggtaccttaaaggaagaaat
tttggcgggaatttaatttggcggatggacgaaaaaactaaatttggcgg
gaatttaatttggcggattgcaaaaaaaagaaattttggcgggaatttaa
tttggcggatggacgaaaaaactaaatttggcgggaatttaatttggcgg
tcgcttaaaaacagcgaaaaaatagcaaaaacaccttaaaagagatcata
ttttcaaaatgtttaatttggcgggaatttaatttggcggattgcaaaaa
aaagaaattttggcgggaacataatttggcggatttcagtcaaatccgcc
aaatccgccaaattttctttccgccaaaatttcttcctttaaggtagagA
ATTCTTGTCATATTCTATGATATTCTActgaaaaaatatttagcaCAGAT
TCTTTTTCGGAGTAGTCATTTTTACAGTGATTTCACAAAGTTTAACCCTA
TCTGTAACCCTAtctttttgttttcgaaaaatcTCACGCCCTAGAAATAT
TCTTaaggtattcttacgatttgctTGATTTTTCACCCtctggtgttctt
ataaagatgtCCCTTTGAGATTATTTCACATTATGTTTCATAGTATCAAT
AACTGTGCATTGTCAATCCCTTTTCTAGAAACTGGAGGTATAGTGATATC
CCCAGTACCAGAACAAGATGTTGTTCCGCCTAAACCAGCATGTCCAATGT
TCCCTTTCTTTGGTGTAAAACCTATTCTTCTGGATGAAGAGGTATCTCAT
CTGAATTTTTCAGCAAACTCTTTTCTCCAGATTAAAATTCTCGTCAATTA
CTTGTTGCCAAAATAACAAATACAGAGAGTAGGGAATGTAATATTATGCA
ATTTTCTCAGTAAGGCTTTCGTTGTTTATCTATCTAAGAAgattttgcct
tattttttgttctcTTTTCTCCTACTCTACAGCCAGTCTGGAAATTGCAG
CTTGTGCACCAGATATCTCCGGCGTAGATTCGAGGTTTGAGATCTACTGC
CTTCAACTTTTCCCAGTTAAGTTGGCGCAGCTCCGGCGTAACATTTCCCT
TCTTTCCAGACTGGCTCTACAGCAGTATTCGCATGGAAAATTGACACCTT
CTATTTATTCTTACTCTTCTTATTATAGGGTAAAGAGCTGCATGGGAATG
ATGTGAGTGGATTGTTATGTTTGGGATCATCATTGCCAGGGATGGCCAGA
ACCATCCATGGAGATCAAGAACGATTTCTAGACGTCTACTATAGACCATA
TCCAGGTACACTTAATTTTTATCCTCATATTCAATAAACATTGGTTTCTA
AAGATGATTTTTAGACCCAGTAATGAAGTGCGATTCGCGTTACATATAAG
GTGTGAGATCTCCAAAATCTTTTGGTCTTAAGATGAGGCTACTGCAACAT
GACCAAGCACTATCAATTGAAATATCAAAGATCAAATTTCATTTAATCAG
AAGATACGTTGAATGAATTCTTTTCCATATAAACTCGCATCCTTAAAGAC
CTCAAGTGACCACtaatctaaaatttccaggattTCATTGTCTAAACACA
ATCCATCAGTGACATCGATTTCGAATGAAAACCTCAAGTTACTTTTTTCC
AGGTTATTACTTCACCGGGGACGGAGCACGTCGTGATGCAGAGGGCCACT
ACCACATTACTGGTCgtgttgatgacgtcatcaatgtcAAAGGTGTTCGA
CTGGGAACAGCTGAAGTTGAAGACGTCATGGTAATTTATGTTTCACTCGA
ATGTTTGCTCTGTTTGCTCGATAGTTTTTCCGACAGAAGAATGGATTTAA
TTTTAGGAAAGCGTCTCTGATTACTGGTCAGATAAAATCATGCGAGGTTG
CACTTATGATTGCCTAATTCCATTATAATACCAAAAGAAATCGACGATTa
gctgatttttttttgaaagatgcTTTTCCCGTGATTTGTTTTCCATGACA
ACCCCTTCTATACTATCATTCtcttactttttcattggttaaTTGTTCGT
TAGGACAACCATGATGCGGTGGCAGAAACAGCAGTCGTTGGATATCCTCA
TGAAATCAAAGGACAAGGTAAAGGATATGGCGCAGAATTGACGTTGCGTT
TTGTGTCATGCGTTGAAATCCGggggtttgacgtcacttttttacgtcaa
aaagagaagctttttaaaattttaatgtttCATAGCACTTTTGTATCATC
ACTCTACAGTCTTTGAATTTATTTCAAAGGGCTAAGTTTGGTATTTTTGA
AACCCTGAATTCTTCCTCTTTTGATTGATATTAAAATTACATTACGAACG
AGTTATGACAGAAAATTTCAAGTTATTTTACAACCACAACCTTTTCCAGC
TATATCCTAAAAAAAGGCAATTTTCTAAGTGCATTTAATGTAAGAAATAT
TTGTCTTGTAATTTGGCACCCCTCTCAGAAGAAACTTCAGTTCTTTTtct
ttccaacgatgtataaaTATCTATGGGttgtaatgatttttctttacgCT
AGCTTGGCTAAAAGATTTGTCACTCCTCAGACCCCCAAAAAAATCCAGCT
GGTAAAAATTGACGTTACtcacaaaaaaacttgtattgAAAGGGCCACTT
GGACCCAAATTTGGCACCTATCCCTggagaaagtagataaaaaatNAAAG
GGCCACCTGGACCCAAATTTGGCACCTATTCCTggagaaagtagataaaa
aatgccaaaaaatgatGTGTAAAAACCTATATCTTGTAAGGGAATTTTAG
TACGCACTGGTCCTCTGAagtttcataaaatatttttcaaagttagcatt
tgaaaatttgacgtcGCTGGCATtacttttcacaatttttttttgttttg
aatttctgaTGTATataccaaaaaatatttttgcaattataaaaaagatt
gaagattgaAAGGTAGAGATTGCATTATTGgacaatttttaattcaaact
aGTAGCACAAACTTAAAGATTTGGCTGTATGTATAGAAAAAGagtaaaaa
ggaaaataaaaaaagtttgaaacaattcTTACTTTTACAGAGAGAGGCAC
AGACAAATTTTACTACTTTTCTTTTGGCATGTTTCATCTTGAAACTAAAA
AAAGACTTACTGTTTCTTCTCGGGAGTTCttgatatccaaaaatgaatta
ccattgatgaaaatttagttttaatATAATATAAATACAATCCTTCGAAA
ACCGAAGGTAAATGTTTAcagtgaaaactgaagcaaagcATTACCAATCC
TTACCTttcacaatcaaatttcaacattgaaagtaattttagaactttct
cTTTAACCCTTTTccaaacttttgtaaaaaaaagaattataaaaTCACAA
ACGAAGCtgagttttttgttttgaaaagttgatcTGTTCTTTTAAAAAGC
CACTCACAAACGAGTGtgataaattgcgtgggttgcgtgccttcgtgggt
cggaaaaaaattcgtgggtctcGTAAAAAACTTCGTGGGTCTcgtaaaaa
aattcgtgggtctcGTAAAAAAATTCGTGGATCGcgtaaaaaaattcgtg
ggtcgcgtaaaaaaattcgtgggtcgcgtaaaaaaattcgtgggtccatg
aaaaaaattcgtgggtccagaaaaaaaattcgtgggtccatgaaaaaaat
tcgtgggtccaaagaaaaaaattcgtgggtccaaaaaaaaaattcgtggg
ttcacaaaaaaaattcgtgggtccatgaaaaaaattcgtgggttcacaaa
aaaatttcGTGGGTCCagtaaaaaaattcgtgggtccagaaaaaaaattc
gtgggttcacaaaaaaaattcgtgggtccatgaaaaaaattcgtgggtcc
atgaaaaaaattcgtgggtccaaaaaaaaaattcgtgggtccatgaaaaa
aattcgtgggtccaaaataaattcgtgggtccatgaaaaaaattcgtggg
ttttggtaaataaaaattttatgtattgcatttaagcatttttttcgTGT
ATAATTTCAACATCAAGATCAAgaacaaaaaagaatttgaagaaaGGAAG
AAAGACAGATAAAATGATTTCTCGTGTTTTTGTACACAAAATATTTAGgt
atgtgaatttttttttcgacttttttgactttaagaaaattcttattcat
aaaaaaaacgtcGTGCACTTTGTATTTTAAACTGTATATATAAAGAAACT
ATCAAAGTAAagagaatatttttagataaacACGAGGTTGAAGGAATTTA
CTTTAGTTAAAAGttaacaaaagaagaaattttatggAAATGACATAGAC
GACAAGACACGAGCCATAAGGTGTCAAAATATTaatctttttataataat
acaGTTTACGCTTTAAATTTAATACAATAGAACAGAAACTTGGGCTCTAT
TCAAAAGATTTATTACGAAATCCTAGCTAgcaaagagagaaatttttttt
ttaaataatgcaATTTTTACTATTAAACTAATTTCatgcaattgaaaaaa
aagatttcttcccATTCCTTTCACCAACTTAGGGCTCAAACAAATTACGG
ATTAATTTAATGGGACAAATCGCGCGAAATTGGTGTTGCGATTTTTGTCA
TCTCagagaagaagtcattgcattgttttttcgcgcgcgttctattttgt
gccaatcaaattgcgtcacgcattcgaaagattcgaaaatgttgcaatca
aaatcaaaacaaaaactttcatttgagactttggcttttgaaaagaaaac
attgagcttttcaaaaaataaaaccttatcgtgctttaattatttttctc
attctcaaaaataaaacttgagaaTGAAGGAAAGTTGTAGAATTAAttaa
attgagattcgattgaaAGAGGTATGTATGTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCTTCGAAATTCTGTTATCGAAGGCAGCCtttatttatctaaaa
tttattcttatcaaatggtgattcaattttggatatcaaaaactACCAAG
GATGACcaataagtttttatttaatttggaaatgaaaaatggcaaaaaag
aaTGAGTAGCTAGAAACAACTGCCGGTCATTTGTGCGAAAAagggatttt
tttttcgaagttcttcATCCAGACTATTTTCCAGACTATTTTCcagtaat
atttgaaaattttaggctgttagtttgaaaatcaaacccAGCTCGATGTT
TAATTTACTTTCGTTGATCAATGTaaaatatgttttgtatttttaattGC
TTTGAACTCTTtataaaactaaaaactaaatacTCATGCCAAAATTTCCT
ACGCCCTTTAGGTCAAAATCTAGATTTCAGAAAAGTTTTTATTATGCCAT
CTTANNCAAACATTAGGGGAATTCAAGGAAAAATGTCTCTgtttttcaaa
gtgaaaaatcACCACATCGCATACCTGAAATTTTGtatttgttatacatt
tttggaatggTCTAAGATTGGAATATCatgacacccctgtttcacagacc
cggtgggacccctaCCCACTGGAAATCCAGGCCCAAAAAATCTTCCCCGG
TGAACAAAAGCATAGCAACTGAAAAAGGCTCatatccccattgaaaaacg
taaaaaatctttaaatcccCACTAAGCTTTGATCGACTTAAATGTCTCAC
CCccaaagaacaatagaaaaaaaagaaaaaaatccgttTTGGATAACCCC
GTTGGATTTTATGTCTCTTTATTTTTAACCACAAACTATGTCACATTATT
ACGGCGTGTCTCATTtcgttgaatttttttgtgaacccacgaattttttt
tgtgaacccacgaattttttttttggacccacgcattttttttgtgaacc
cacgaatttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTcttgacccacgaattttttttcttgacc
cacgaattttttttttggacccacgaatttttttcatggacccacgaatt
ttttttcttgacccacgaattttttttcttgacccACGAATTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcccacgaatttttttcatggacccac
gaattttttttgtggacccacgaatttttttccgacccacgaaggcacgc
aacccacgcaatttatcaCACTCCTCACAAACTGACgtgaattgtttttg
ttttcatgaaaCAATTGGAATGTttttcgaatgcgtgacgcaatttgatt
ggcgAAGATTCGAACACGCGCGAAAAACACTGCAACATCTTCTTTTTTAA
GATGACACAAAACGTAAGCGCAATTCTGTGCCATCTTAGCGATCGCATTT
TCTATCAAACCTTTTTTGCTTAGTGTGAAGCCAATAAAGACTAGTTGTAT
AAAGTTCTCGAAACAGAACAATACCTTCACATAGACGGGTGTTCCCTTGT
TACACCCCTGTTTTCTTAACTCTTTGGGAATTATTAGTTGAAAGGTAATA
TTTTAACGTCattcgaatttctttttttctgtagTTGTAAAACGTTAAgt
cttttcttttgttgaaaaaaacatAGTCTAGAATTCTAGACGACTAGTTC
AGCCATCATTCATAACAGaactaattcatgatatgcaccactgcaatgac
ttcacgaaattatgcaacttttctgtgtttttttcaCCCAacacgtcact
ttttctattgtttattaagtgacgtattggtggaaaattttaaaagttct
cagaagactctccagtggtgcatatcgtGAATCAATAGAAGGGACGGATT
TTAGTATTCACTATACGATTCCCGGTGTTATGGTATTATCTTATAACAAC
CATATTATTGTATTACAAGGATTATAAACTAGTCGAACTCCAGTCGAATA
ACATCATTATAAAAATTCGATTTCAGGTGTGTACGCATACGTGACGTTAA
AAGAAGGGATCTCTGAATCTGAAGAAGATATCAAGAAAGAGTTACAAGCA
ATGGTCAAAAGTTCTATTGGCTCTTTCGCCGTCCCCGAAATGATACAGGT
TTGATTTCGTTTTTCAATAATTGatctttttattttaacagtcAGACAGT
GTCAATATAAGAAGTAATTTACCAAAGCCTGGGAAAGTTCTTAATACATT
AGAATAGAATGAGTAAGTATTAGCTGCATTTTCACCGCATATTTTCTTGC
GATAAAGTTCTCGTACTCTACCGTAAGTTGGTAAGATGTCGACATCCCAC
ATCTAATTCTTTAGAGCTCGGAATTATAGGAAGGTTGGAATCGCTGATCG
CTAATTAGCGGTCAGAGAGGAAATAATCTTCAGTGATTCTGATCTTCCTT
TGAATCCTTTctctaaaaagggtgtcggaaatagatgagggatgtcgata
ttagaccaacttacggtccTTTCTctaagaagggtgtcggaaatagacga
gggatgtcgatattagaccaacttacggtccTTTCTctaagaagggtgtc
ggaaatagtcgagggatgtcgatattagaccaacttacggtatgttCTTA
GACTATTTTAGAATAGAAGGCTCGTGAAGGGAATTTATGAAATTATActt
acttatttctttttttagattGCACCAGGTCTTCCAAAGACACGGTCGGG
GAAAATTATGCGACGTATATTACGTTGTGTTGCCGCTAACAAGCCCGAGG
ATGTGGGAGATATCAGTACTCTGGCTGACGATTCTGTTGTCGAAGAAATC
ATTGCTAATCatgaaaaacttttacaaaaaatgaagaaatagaGCTTGGA
GCTGATTAATATTGACCATCGATGTTTGGCTGGAATTTCTTGATATGTTA
ACTGTGATGGTAGGATGAAAGTCCTTAAGACAATAAGTTCAGTTTGCACT
CATGTTCAGTTCTCAAGGAAGGGCAGCAGAAATTGATAGTTCTACACTAG
ACAAGTTATTTGATTTACCTAAACCACCTTATTCTCGAAGACCCGGTGTG
GCCCCTCCCACTGGCAAAAATctgccaaaatatcgtcccaagTATAAAAT
TATATTCTTTCTTGTTGTCCCCCCcccctcactgcaaaatatttgttcaa
ctttttcaattttcaccgaattttctgacttaaaaacaatggaGCTAAAA
TCCCCAGCTATAAAAAGATGGGTAATATATCAATCCCTatcgagtttcag
ttcgttCTTTTACCCCAACTGGCTGAAATCATACGGGTCTGAGAAAATTG
GGTGTTCTAATGTTGAAGAATGACGATTCTCTTTGTCTTTGCATAGAATA
TCTATCTTACCTGTCGATGTTTTTCtccaatcaaaatatttggGTTTTAT
ACAGGGTTATCGTAATATTTAGTATAGTTTTTTTAATATTCACAATATCA
TAAAGGTGTCATATATTTTATAGATTTATAGATTTtgtaaacaaatgatt
tttttgtaaataacaTTAGCTAAAAGCAC

Coding sequence (CDS) from alignment at sc0000011:898503..912481+

>TCONS_00001613 ID=TCONS_00001613|Name=TCONS_00001613|organism=Clytia hemisphaerica|type=CDS|length=2049bp|location=Sequence derived from alignment at sc0000011:898503..912481+ (Clytia hemisphaerica)
ATGTCAAGGTTAATAAGAATTTCAAgagatttgatgaaaaataatctgca
acatgcTTTCAAAAATAACACATGGTATCAAACTAAATCAAGATGTTTAT
CAATTGCTGCAACTCTACAACATTATGGTCCATCTGTTTTGGGAGCTGAC
CAAGTTAAAAAGATGTATGAGCAGAGTTTGTCTGATCCTGAAACATTTTG
GGGAGAACATGCACGTAGTAAATTAAACTGGATCAAGGATTTTGAACAAG
TTTCTAACAGTGACATGAATACTGGGAAACATGAATGGTTTTTAAATGGA
AAGATCAATGTGTCAGaaaattgtCTGGACAGACATGTTGCTAGAGATCC
TGATGCAACTGCACTGATTTGGGAAAAAGATGAACCCAATACGCATGTGA
AAGTATCTTACAAaGAGCTTCTTGAGAAAACTTGTCAAGTAGCAAATGTT
TTGAAACGAAAAGGTGTCCAGAAAGGAGATACTGTGTGTATTTACATGCC
TGTATCACCTATCGCAGTTGCTTGTATGTTAGCATGTACTAGAATTGGTG
CTGTTCATAGTGTTGTATTTGCTGGATTTAGTGCTGAAGCTCTTTCTGCT
CGAATAAATGATGgTGGCTCCAAAATTGTGATCACTGCAGACGAAGGTTT
GCGTGGATCAAAGAGAATCTCTTTAAAGAATACAGTAGATAAAGCTTTGG
AGAATTGTTCTGTTGACAATGTGTTAGTGTACCAACGAACTGGAGCTGAT
GTGCACATGCAACATGGAAGAGACCTTTATCTAGAAGAGGAAATGTCAAG
TGAAAGTATTGAGTGTGTACCAGAACCAATGGACAGTGAAGATCCACTTT
TTATATTGTACACATCAGGAAGTACCGGAAAACCCAAAGGTGTTCAACAT
TCACAAGCTGGATATTTGCTTTACGCCATGATGACCCATAAATATGTATT
CAAGTATGAAGTTGGTGATATATACGCATGCGTAGCTGACATTGGTTGGA
TTACGGGACATTCATATGTTGTTTACGGTCCTTTAGCAAATGGTGCAACA
TCTGTTTTATTCGAAAGTGTTCCTACGTATCCAGATCCTGGGCGCTATTG
GGAGATGGTAGAGAGGCTAAAAGTCAACCAGTTCTATGGTGCACCTACTG
CAATTCGCTTGTTATTGAAATTTGGAAATGAATTTGTGGAGAAATATGAT
AGAGATACATTGAAAGTGTTGGGAACAGTTGGTGAGCCAATAAATGAAGA
AGCATGGCATTGGTATTATGATATTGTTGGACAAAAGAAATGCCCCATTT
CTGACACTTGGTGGCAAACAGAAACTGGAGGTATAGTGATATCCCCAGTA
CCAGAACAAGATGTTGTTCCGCCTAAACCAGCATGTCCAATGTTCCCTTT
CTTTGGTGTAAAACCTATTCTTCTGGATGAAGAGGGTAAAGAGCTGCATG
GGAATGATGTGAGTGGATTGTTATGTTTGGGATCATCATTGCCAGGGATG
GCCAGAACCATCCATGGAGATCAAGAACGATTTCTAGACGTCTACTATAG
ACCATATCCAGGTTATTACTTCACCGGGGACGGAGCACGTCGTGATGCAG
AGGGCCACTACCACATTACTGGTCgtgttgatgacgtcatcaatgtcAAA
GGTGTTCGACTGGGAACAGCTGAAGTTGAAGACGTCATGGACAACCATGA
TGCGGTGGCAGAAACAGCAGTCGTTGGATATCCTCATGAAATCAAAGGAC
AAGGTGTGTACGCATACGTGACGTTAAAAGAAGGGATCTCTGAATCTGAA
GAAGATATCAAGAAAGAGTTACAAGCAATGGTCAAAAGTTCTATTGGCTC
TTTCGCCGTCCCCGAAATGATACAGattGCACCAGGTCTTCCAAAGACAC
GGTCGGGGAAAATTATGCGACGTATATTACGTTGTGTTGCCGCTAACAAG
CCCGAGGATGTGGGAGATATCAGTACTCTGGCTGACGATTCTGTTGTCGA
AGAAATCATTGCTAATCatgaaaaacttttacaaaaaatgaagaaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000840XLOC_000840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001613-proteinTCONS_00001613-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001613-exon-sc0000011-1491911889:898503..898930TCONS_00001613-exon-sc0000011-1491911889:898503..898930Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:898503..898930TCONS_00001613-exon-sc0000011-1510915933:898503..898930Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:898503..898930TCONS_00001613-exon-sc0000011-1575043694:898503..898930Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:899313..899409TCONS_00001613-exon-sc0000011-1491911889:899313..899409Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:899313..899409TCONS_00001613-exon-sc0000011-1510915933:899313..899409Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:899313..899409TCONS_00001613-exon-sc0000011-1575043694:899313..899409Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:899904..900050TCONS_00001613-exon-sc0000011-1491911889:899904..900050Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:899904..900050TCONS_00001613-exon-sc0000011-1510915933:899904..900050Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:899904..900050TCONS_00001613-exon-sc0000011-1575043694:899904..900050Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:900255..900307TCONS_00001613-exon-sc0000011-1491911889:900255..900307Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:900255..900307TCONS_00001613-exon-sc0000011-1510915933:900255..900307Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:900255..900307TCONS_00001613-exon-sc0000011-1575043694:900255..900307Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:900746..900921TCONS_00001613-exon-sc0000011-1491911889:900746..900921Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:900746..900921TCONS_00001613-exon-sc0000011-1510915933:900746..900921Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:900746..900921TCONS_00001613-exon-sc0000011-1575043694:900746..900921Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:901362..901514TCONS_00001613-exon-sc0000011-1491911889:901362..901514Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:901362..901514TCONS_00001613-exon-sc0000011-1510915933:901362..901514Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:901362..901514TCONS_00001613-exon-sc0000011-1575043694:901362..901514Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:901849..902134TCONS_00001613-exon-sc0000011-1491911889:901849..902134Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:901849..902134TCONS_00001613-exon-sc0000011-1510915933:901849..902134Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:901849..902134TCONS_00001613-exon-sc0000011-1575043694:901849..902134Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:902363..902455TCONS_00001613-exon-sc0000011-1491911889:902363..902455Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:902363..902455TCONS_00001613-exon-sc0000011-1510915933:902363..902455Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:902363..902455TCONS_00001613-exon-sc0000011-1575043694:902363..902455Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:903831..903943TCONS_00001613-exon-sc0000011-1491911889:903831..903943Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:903831..903943TCONS_00001613-exon-sc0000011-1510915933:903831..903943Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:903831..903943TCONS_00001613-exon-sc0000011-1575043694:903831..903943Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:904331..904457TCONS_00001613-exon-sc0000011-1491911889:904331..904457Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:904331..904457TCONS_00001613-exon-sc0000011-1510915933:904331..904457Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:904331..904457TCONS_00001613-exon-sc0000011-1575043694:904331..904457Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:904805..904932TCONS_00001613-exon-sc0000011-1491911889:904805..904932Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:904805..904932TCONS_00001613-exon-sc0000011-1510915933:904805..904932Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:904805..904932TCONS_00001613-exon-sc0000011-1575043694:904805..904932Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:905206..905269TCONS_00001613-exon-sc0000011-1491911889:905206..905269Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:905206..905269TCONS_00001613-exon-sc0000011-1510915933:905206..905269Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:905206..905269TCONS_00001613-exon-sc0000011-1575043694:905206..905269Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:910929..911050TCONS_00001613-exon-sc0000011-1491911889:910929..911050Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:910929..911050TCONS_00001613-exon-sc0000011-1510915933:910929..911050Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:910929..911050TCONS_00001613-exon-sc0000011-1575043694:910929..911050Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1491911889:911621..912481TCONS_00001613-exon-sc0000011-1491911889:911621..912481Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1510915933:911621..912481TCONS_00001613-exon-sc0000011-1510915933:911621..912481Clytia hemisphaericaexon
TCONS_00001613-exon-sc0000011-1575043694:911621..912481TCONS_00001613-exon-sc0000011-1575043694:911621..912481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:898503..912481 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65667	3.48717	1.44605	1.20625	5.31194	4.656	14.1382	14.8056	12.8241	14.4253	12.6259	9.49059	22.4775	21.0218	13.4277	17.9736	21.3851	21.2777	17.4206	21.0109	19.848	22.1393	15.5838	17.7134	14.4771	13.8995	24.2037	19.3387	24.292	17.4829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025110AMP-bd_C
IPR011904Ac_CoA_lig
IPR000873AMP-dep_Synth/Lig
IPR032387ACAS_N
IPR020845AMP-binding_CS
Vocabulary: Biological Process
TermDefinition
GO:0019427acetyl-CoA biosynthetic process from acetate
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003987acetate-CoA ligase activity
GO:0016208AMP binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019427 acetyl-CoA biosynthetic process from acetate
biological_process GO:0008152 metabolic process
molecular_function GO:0003987 acetate-CoA ligase activity
molecular_function GO:0016208 AMP binding
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00001613 vs. Swiss-Prot (Human)
Match: ACS2L (Acetyl-coenzyme A synthetase 2-like, mitochondrial OS=Homo sapiens GN=ACSS1 PE=1 SV=2)

HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 357/626 (57.03%), Postives = 474/626 (75.72%), Query Frame = 2 
Query:  275 MYEQSLSDPETFWGEHARSKLNWIKDFEQVSNSDMNTGKHEWFLNGKINVSENCLDRHVARDPDATALIWEKDEPNTHVKVSYKELLEKTCQVANVLKRKGVQKGDTVCIYMPVSPIAVACMLACTRIGAVHSVVFAGFSAEALSARINDGGSKIVITADEGLRGSKRISLKNTVDKALENC-SVDNVLVYQRTGADVHMQHGRDLYLEEEMSSESIECVPEPMDSEDPLFILYTSGSTGKPKGVQHSQAGYLLYAMMTHKYVFKYEVGDIYACVADIGWITGHSYVVYGPLANGATSVLFESVPTYPDPGRYWEMVERLKVNQFYGAPTAIRLLLKFGNEFVEKYDRDTLKVLGTVGEPINEEAWHWYYDIVGQKKCPISDTWWQTETGGIVISPVPEQDVVPPKPACPMFPFFGVKPILLDEEGKELHGNDVXXXXXXXXXXXXMARTIHGDQERFLDVYYRPYPGYYFTGDGARRDAEGHYHITGRVDDVINVKGVRLGTAEVEDVMDNHDAVAETAVVGYPHEIKGQGVYAYVTLKEGISESEEDIKKELQAMVKSSIGSFAVPEMIQIAPGLPKTRSGKIMRRILRCVAANKPEDVGDISTLADDSVVEEIIANHEKLLQK 2149
            +  Q+  +P  FWG  AR  L W   +  V + D +TGK  WFL G++NVS NCLD+HV + P++ ALIWE+DEP T V+++Y+ELLE TC++AN LKR GV +GD V IYMPVSP+AVA MLAC RIGAVH+V+FAGFSAE+L+ RIND   K+VIT ++GLRG + + LK  VD+A+++C +V +VLV  RT   VHM    D+ LE+EM+ E   C PE M SED LF+LYTSGSTG PKG+ H+QAGYLLYA +THK VF ++ GDI+ CVADIGWITGHSYVVYGPL NGATSVLFES P YP+ GRYWE VERLK+NQFYGAPTA+RLLLK+G+ +V+KYDR +L+ LG+VGEPIN EAW W + +VG  +C + DTWWQTETGGI I+P P ++     PA  M PFFG+ P+L+DE+G  + G++VSG LC+  + PGMARTI+GD +RF+D Y++ YPGYYFTGDGA R   G+Y ITGR+DDVIN+ G RLGTAE+ED + +H AV E+AV+GYPH+IKG+  +A++ +K+   +S+  + +EL++MV + I  +AVP+ I +   LPKTRSGK+MRR+LR +  ++ +++GD +TL D S++ EI++ ++K   K
Sbjct:   61 LSAQAAREPAAFWGPLARDTLVWDTPYHTVWDCDFSTGKIGWFLGGQLNVSVNCLDQHVRKSPESVALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVAAMLACARIGAVHTVIFAGFSAESLAGRINDAKCKVVITFNQGLRGGRVVELKKIVDEAVKHCPTVQHVLVAHRTDNKVHMGD-LDVPLEQEMAKEDPVCAPESMGSEDMLFMLYTSGSTGMPKGIVHTQAGYLLYAALTHKLVFDHQPGDIFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGALCISQAWPGMARTIYGDHQRFVDAYFKAYPGYYFTGDGAYRTEGGYYQITGRMDDVINISGHRLGTAEIEDAIADHPAVPESAVIGYPHDIKGEAAFAFIVVKDSAGDSDV-VVQELKSMVATKIAKYAVPDEILVVKRLPKTRSGKVMRRLLRKIITSEAQELGDTTTLEDPSIIAEILSVYQKCKDK 684
The following BLAST results are available for this feature:
BLAST of TCONS_00001613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACS2L0.000e+057.03Acetyl-coenzyme A synthetase 2-like, mitochondrial... [more]
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