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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001642 ID=TCONS_00001642|Name=TCONS_00001642|organism=Clytia hemisphaerica|type=transcript|length=4477bpRun BLAST on NCBI protein sequence of TCONS_00001642-protein >TCONS_00001642-protein ID=TCONS_00001642-protein|Name=TCONS_00001642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1484bp MSNRLKKKNSPTSLSFSVDVVHLLQKELSELDLSEDVCNQFKGIIACPSNRun BLAST on NCBI transcript from alignment at sc0000011:125927..136503- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001642 ID=TCONS_00001642|Name=TCONS_00001642|organism=Clytia hemisphaerica|type=transcript|length=10577bp|location=Sequence derived from alignment at sc0000011:125927..136503- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:125927..136503- >TCONS_00001642 ID=TCONS_00001642|Name=TCONS_00001642|organism=Clytia hemisphaerica|type=CDS|length=4452bp|location=Sequence derived from alignment at sc0000011:125927..136503- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001642 vs. Swiss-Prot (Human)
Match: THADA (Thyroid adenoma-associated protein OS=Homo sapiens GN=THADA PE=1 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 1.381e-99 Identity = 294/1063 (27.66%), Postives = 508/1063 (47.79%), Query Frame = 3
Query: 1140 ITDSAIPFLITNVDHGIDTVRHSVTASLKECLG-YLLKSNKRSIVE-----ELTQKYVTNDFKSRGKLNVLSSLCEISSMKSVLSTRLTFPKDLLELLGDVDLASHATNVYKTASKKHLEELQSRNES---LSKWNKTWISGISVGLMSDCKDTKANMVNYIVPAMLKINPLVLNYLL----SEFNVNSSMVEFYTAVVFLKTARGMKNVSQEIFKIKSSSGEGHI------WNGLMNFDLLKKCIVHIDDQVRLDVLSLVCSSVKTTDHVSEDDIELIKVFLQYNMAVENPSFRQQTVVCFKKLVTRIFAHT---YQITKSRSPNKTQ----------IVQLYSDFIVWFIAHVFNNLYLDAPYCQMXXXXXXXXXXXXXXGENISSDVTKSLLIDDVIKQTYTTKLLNCLHDTYDPNRLLVLSIFSKKPLFTIEFSQE-KLLSLGDTAIQNLYSPQPDISSVAAYQLCFLSF------------SENVGDTAKDRYPC------LTMLKNLFQHLLKQVSIMKMSLLKASQDAPIHGTLFAIRLLXLKASQDAPIHGTLFAIRLLFQTHQWNLNHSTVKSNREDFNQFVNEFTKLGFDIIELVSPYVTNEAPEG-------------------QLCNVNLSDIF---ELLSVHG---------------------GDTVLQAHV-ARMILVCCWRSMKEVSLILGLFISHFVD---PSSQDSLLSNEMFLDMWDMFNNIMLRSKHAGAYELASIGFLKLCTTLWISRDESLRTLPLNAVQDLIADLTSSEPMENAQVTRRSAGLPFYLQSLCSTEPEINGKAXXXXXXXXXXELCLDHLQTHDINKTVI---ALNVLRAFYKDAKMCEDVFPYVAKGIMIALNGFGSSLWPIRNSCTLLFSSLMQRIFGVKKVK--------MTGREFFSRYPQLYPYLVEKTKLMSVTNESN---TQLHPSVFPILLLLSHLYPSTIEGADSLMKLDVFLESILSLSGNPVYKTRTMTANALVPLVSLERAESVTKRILGDIKRHYEGTINQNAIHGCLLQLFRLIKKWA 3992
I + ++ T+ +H +D +RH K L + L V ELT+ + ++ +GK L L E ++ +L+ T P +LE++GD L +A+++ +T + H L+S+ + +W++TW+S + L D K+ +++Y +P +L +P L Y++ + + + + + ++ + RG +I + GH+ W L++ +K+ ++H QVR+D L L+C S ++T+ VS ++++ I+ F+ YN+ ++P RQQ KKL RI + Y++ +S+S + + +Q Y +F+ +F L+ + Y + L ++ I T L D+ + T L+ C T++ ++L + K + F KL L A++ S +P A+Y L FL + ++ V DR L ++K L ++L ++VS + SLL+A+ P++G + I K S L +++L+ ++ V + + + + +VSP + + +PEG ++ + +D F ++L H G V V A+M+LVCCWRSMKEV+L+LG+ P S D LL+ E ++ D F +L+S+H GA+ELA GF+KL L + SL+ LP + ++ ++ S+P TRRSAG+PFY+Q+L ++EP+ K L ++ EL T DI TV ALN+LRA ++D ++ E++ PYVA G A+ GF S +W +RNS TLLFS+L+ RIFGVK+ K MTGREFFSR+P+LYP+L+++ + ++ T +S+ HPS+F +LL+L LY S ++G S + + F+ I+ +PVY +R M A ALVP V ++ + + +L + + QN IHG LLQ+F L++ ++
Sbjct: 388 IVGRLLEYVYTHWEHPLDALRHQTKIMFKNLLQMHRLTVEGADFVPDPFFVELTESLLRLEWHIKGKYTCLGCLVECIGVEHILAIDKTIPSQILEVMGDQSLVPYASDLLETMFRNHKSHLKSQTAESSWIDQWHETWVSPLLFILCEGNLDQKSYVIDYYLPKLLSYSPESLQYMVKILQTSIDAKTGQEQSFPSLGSCNS-RGALGALMACLRI--ARAHGHLQSATDTWENLVSDARIKQGLIHQHCQVRIDTLGLLCESNRSTEIVSMEEMQWIQFFITYNLNSQSPGVRQQICSLLKKLFCRIQESSQVLYKLEQSKSKREPENELTKQHPSVSLQQYKNFMSSICNSLFEALFPGSSYSTRFSALTILGSIAEVFHVPEGRIYTVYQLSHDIDVGRFQT-LMECFTSTFEDVKILAFDLLMKLSKTAVHFQDSGKLQGLFQAALELSTSTKPYDCVTASYLLNFLIWQDALPSSLSAYLTQQVACDNGDRPAAVVERNTLMVIKCLMENLEEEVSQAENSLLQAAAAFPMYGRVHCITGALQKLS--------LNSLQLV-----------------SEWRPVVEKLLLMSYRLSTVVSPVIQSSSPEGLIPMDTDSESASRLQMILNEIQPRDTNDYFNQAKILKEHDSFDMKDLNASVVNIDTSTEIKGKEVKTCDVTAQMVLVCCWRSMKEVALLLGMLCQLLPMQPVPESSDGLLTVEQVKEIGDYFKQHLLQSRHRGAFELAYTGFVKLTEVLNRCPNVSLQKLPEQWLWSVLEEIKCSDPSSKLCATRRSAGIPFYIQALLASEPK---KGRMDLLKITMKELISLAGPTDDIQSTVPQVHALNILRALFRDTRLGENIIPYVADGAKAAILGFTSPVWAVRNSSTLLFSALITRIFGVKRAKDEHSKTNRMTGREFFSRFPELYPFLLKQLETVANTVDSDMGEPNRHPSMFLLLLVLERLYASPMDGTSSALSMGPFVPFIMRCGHSPVYHSREMAARALVPFVMIDHIPNTIRTLLSTLPSCTDQCFRQNHIHGTLLQVFHLLQAYS 1418 The following BLAST results are available for this feature:
BLAST of TCONS_00001642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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