|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001644 ID=TCONS_00001644|Name=TCONS_00001644|organism=Clytia hemisphaerica|type=transcript|length=2426bp
tttggtTTAAGATCAAAATTATAAATCAAAATGACTGAGACAAATTGTGA
TGAAGATTATCTGTTTGCAAACTTTGATACGACTACAAAAGAAGACACCA
TGGAAGATGGCGGTGGTGGAGGTGGAGGGAATGAAACAGCCACTGAAACA
GAAGAGGAATATGTGCCAGCCCCAATCACTTCAAAGCCAAAGAAATCTAA
AAAGAGTAAACGAACTGGAGGTGATTTAGACGAAGCTCAAGTTAATGCCC
AAAATAAATACATCAACGAGCTGGAAcagcaaaatttgaagttgAAATCT
ATTATTAAACGTATGTTAGGTCCACAGGTGTTTTCCATGGTGAATGATTT
ACAAGGAGATGAGGAGATAGATCTTGTAAAGAAACTGGAGAATGATATTC
AGTCAAAACCCTTTGCTGTTGTCATGTTCCTAAACAATGATATTTCAACC
GCTCATCGTAAGGAAATCAACAATATCATGCGCGAGGTCAGTGAAAAAGA
TGCCAAACAAGACGTCTTGATGGCTCATAAATTACAACCACAGAACTCTG
CTATTCCTCTAAAAGCATTTACTACTAATCTCAAAGGTAAACGTTGCAAC
CCTGGTAAAAATCAGGATGAGGAACCTTACATTGTTTGTTCATGTCAGTA
TTTTAAGAGTTTTTACTTAGATCGACTTGGTGTTCCACTGCTAGAAGATA
ACCCAAACCAAACAGATGTATTAGATGTACCAGCCTATCCACAGATTTTT
AGTAAAGCCTTACCCATTGTCGAAGAGGCTTTGAACGTGCGAGTCAAACA
CATGAAACAGTGTTTCAACTGTGGTGGCGAGCATCATTTGAATGAATGCA
CTGAACCCAGAGATCACAACCGGATACGCGAGAATCGTAACAAATTCGCC
AGTAAAGGACCTCCTAAAATCAACTTCAACATGGACACTGATGAACTAGA
TCCTCGCTTCAAACCATTCAAACCAGGGGTAATCAGTGTTGGCCTGGAAG
AGGCCCTCGGTATCTCTCTTAAAGAACAGTTACCTCCTTACATCTATAAA
ATGAGAGAGCTGGGCTATCCACCAGCTTGGGTGAGACCTGTAGATGATGA
TGGATTGAAAGTGTATGGAGCTGATGGAAATGTCATCGAAAATGCTGATT
ATGAAGAAGGAGAAATCAAACCTATCAATATCCCAGATATTGTTGAATAC
CCAGGATTCAACGTTCCTCCACCACAGGGAGTGGCTGATGAATACGAAGC
AATGGGAGCTCCTAAATTCAACAAAACAAACGCCGATTATGACGCCAGGC
GGAAACGAGCGCAAATCCTGGGATATTTCGAAAACGAGCACGGCGAACCT
CTcgccaaaaaattgaaattcgacGATTCTGTCAGTAtggaaattgatga
aaatacgGTTGATCTTGTCGACGGGAAACCACCACTTCCGCTGATTGACG
TGACCGCTCGTCCGCCATCACCGGAACATGATACGGAAGAATCAAACAAA
GAATCAACTGCTGAAAGTCAAGACGAAGAAGTGTTCGCTGATGGAGAAGG
CGGCGAAGAAACGAGTGGAAAAGACACGGCAACCGAACAAGAAACGGAAG
ACGAAAGTGCCGTGactgaaaaagaagatgaatcAACGGATGCTGATAGT
AACGGGAAAACAACGCGTCTGAGTTCTTCCACCAAGGACATCGATGATAC
AACTTACCGACATTGGTTTTCACAAGCGTTCACAAGTAGTAAAGGACTCA
CATACACGATGTATACACCTCCCCCGCAATGTTTACAAAACGTCAAAATG
TCAGACTTACCTAAAAACCCGGTCATTGAAATCGACCGTGAGCCGTGGAA
AACGTCGAATGTCAGCTGGTACTTTCCGCTTTACGGTGATCTGGCCGCCC
CCACCGGTACCTTTGATAACATACGGACATTGCTGAAAGACACGAATCTC
AAACGAAAGAAACGAAAGCCTTTGAAGTGAAAGATGTATCTTTCATGTTC
TTCGTGTTTCTAAGAGAGACAACTTCAACTTTTCCCTGCTGGAAATAAAG
AGGTAACTAAAACGACTCatctaaaaactaaaaacttcaTCTTACTTACG
GAGTTTTGCAGTTTCCCCTGATGTATATCATGAGATCCTAAGGTGTATGG
TTTACCGTAATGATAATGACAGATATGTAAATTATTAGACGATTCGAATG
ATGTAACAATGATAAATGTGAGTTTCACTGTATTCTCATTCATTCTTTCG
GAACGTaggacaatagaaaaataaaatgtgtCTGGGAAGAAAGCGCAACA
AAATCCATAATGATgaaaatcctcataatttaaGCAAAATTTGGTGAACT
AAAAAACTATTAATTGCCTTGGGAATGGAACAGGGAAGCTAGGTCGTATT
GTATGAAATCTTTTTATCTGGACAAT Run BLAST on NCBI protein sequence of TCONS_00001644-protein >TCONS_00001644-protein ID=TCONS_00001644-protein|Name=TCONS_00001644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MTETNCDEDYLFANFDTTTKEDTMEDGGGGGGGNETATETEEEYVPAPIT
SKPKKSKKSKRTGGDLDEAQVNAQNKYINELEQQNLKLKSIIKRMLGPQV
FSMVNDLQGDEEIDLVKKLENDIQSKPFAVVMFLNNDISTAHRKEINNIM
REVSEKDAKQDVLMAHKLQPQNSAIPLKAFTTNLKGKRCNPGKNQDEEPY
IVCSCQYFKSFYLDRLGVPLLEDNPNQTDVLDVPAYPQIFSKALPIVEEA
LNVRVKHMKQCFNCGGEHHLNECTEPRDHNRIRENRNKFASKGPPKINFN
MDTDELDPRFKPFKPGVISVGLEEALGISLKEQLPPYIYKMRELGYPPAW
VRPVDDDGLKVYGADGNVIENADYEEGEIKPINIPDIVEYPGFNVPPPQG
VADEYEAMGAPKFNKTNADYDARRKRAQILGYFENEHGEPLAKKLKFDDS
VSMEIDENTVDLVDGKPPLPLIDVTARPPSPEHDTEESNKESTAESQDEE
VFADGEGGEETSGKDTATEQETEDESAVTEKEDESTDADSNGKTTRLSSS
TKDIDDTTYRHWFSQAFTSSKGLTYTMYTPPPQCLQNVKMSDLPKNPVIE
IDREPWKTSNVSWYFPLYGDLAAPTGTFDNIRTLLKDTNLKRKKRKPLK Run BLAST on NCBI transcript from alignment at sc0000011:190366..193179- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001644 ID=TCONS_00001644|Name=TCONS_00001644|organism=Clytia hemisphaerica|type=transcript|length=2814bp|location=Sequence derived from alignment at sc0000011:190366..193179- (Clytia hemisphaerica)
TTTGGTTTAAGATCAAAATTATAAATCAAAATGACTGAGACAAATTGTGA
TGAAGATTATCTGTTTGCAAACTTTGATACGACTACAAAAGAAGACACCA
TGGAAGATGGCGGTGGTGGAGGTGGAGGGAATGAAACAGCCACTGAAACA
GAAGAGGAATATGTGCCAGCCCCAATCACTTCAAAGCCAAAGAAATCTAA
AAAGAGTAAACGAACTGGAGGTGATTTAGACGAAGCTCAAGTTAATGCCC
AAAATAAATACATCAACGAGCTGGAACAGCAAAATTTGAAGTTGAAATCT
ATTATTAAACGTATGTTAGGTCCACAGGTGTTTTCCATGGTGAATGATTT
ACAAGGAGATGAGGAGATAGATCTTGTAAAGAAACTGGAGAATGATATTC
AGTCAAAACCCTTTGCTGTTGTCATGTTCCTAAACAATGATATTTCAACC
GCTCATCGTAAGGAAATCAACAATATCATGCGCGAGGTCAGTGAAAAAGA
TGCCAAACAAGACGTCTTGATGGCTCATAAATTACAACCACAGAACTCTG
CTATTCCTCTAAAAGCATTTACTACTAATCTCAAAGGTAAACGTTGCAAC
CCTGGTAAAAATCAGGATGAGGAACCTTACATTGTTTGTTCATGTCAGTA
TTTTAAGAGTTTTTACTTAGATCGACTTGGTGTTCCACTGCTAGAAGATA
ACCCAAACCAAACAGATGTATTAGATGTACCAGCCTATCCACAGATTTTT
AGTAAAGCCTTACCCATTGTCGAAGAGGCTTTGAACGTGCGAGTCAAACA
CATGAAACAGTGTTTCAACTGTGGTGGCGAGCATCATTTGAATGAATGCA
CTGAACCCAGAGATCACAACCGGATACGCGAGAATCGTAACAAATTCGCC
AGTAAAGGACCTCCTAAAATCAACTTCAACATGGACACTGATGAACTAGA
TCCTCGCTTCAAACCATTCAAACCAGGGGTAATCAGTGTTGGCCTGGAAG
AGGCCCTCGGTATCTCTCTTAAAGAACAGTTACCTCCTTACATCTATAAA
ATGAGAGAGCTGGGCTATCCACCAGCTTGGGTGAGACCTGTAGATGATGA
TGGATTGAAAGTGTATGGAGCTGATGGAAATGTCATCGAAAATGCTGATT
ATGAAGAAGGAGAAATCAAACCTATCAATATCCCAGATATTGTTGAATAC
CCAGGATTCAACGTTCCTCCACCACAGGGTATGCCAGATTGTTATTTTCA
GTTTTGATTGTTTGTTTGATTATTTTGGACAGCTGTCTACAATTATACCA
GATAATACCACTATTTTAGGTTTTCATTTTCTTAGGTACCTGAGCACACA
TAAAATGAAATCGTACCTTACTATTCAAAAAATGCCGAATATTATACAAT
AAATCTTTATATTTCTATGGTATTTCACTATCTTTCTTGCCAAATCTTAA
GAACATCGTCCCTAGAACCTAAAAAGCATAATTTACAGCCTGCAACATTT
TTCCTGATCAAAACAAAGTAACAAATTCAAAACAAATACAAAAATAGTTA
ACTTCGTGCTCTTCACTCACTTACGTATAAATCTTAACTTCAAACGTAAC
TCTCTCTCTTCTACAGGAGTGGCTGATGAATACGAAGCAATGGGAGCTCC
TAAATTCAACAAAACAAACGCCGATTATGACGCCAGGCGGAAACGAGCGC
AAATCCTGGGATATTTCGAAAACGAGCACGGCGAACCTCTCGCCAAAAAA
TTGAAATTCGACGATTCTGTCAGTATGGAAATTGATGAAAATACGGTTGA
TCTTGTCGACGGGAAACCACCACTTCCGCTGATTGACGTGACCGCTCGTC
CGCCATCACCGGAACATGATACGGAAGAATCAAACAAAGAATCAACTGCT
GAAAGTCAAGACGAAGAAGTGTTCGCTGATGGAGAAGGCGGCGAAGAAAC
GAGTGGAAAAGACACGGCAACCGAACAAGAAACGGAAGACGAAAGTGCCG
TGACTGAAAAAGAAGATGAATCAACGGATGCTGATAGTAACGGGAAAACA
ACGCGTCTGAGTTCTTCCACCAAGGACATCGATGATACAACTTACCGACA
TTGGTTTTCACAAGCGTTCACAAGTAGTAAAGGACTCACATACACGATGT
ATACACCTCCCCCGCAATGTTTACAAAACGTCAAAATGTCAGACTTACCT
AAAAACCCGGTCATTGAAATCGACCGTGAGCCGTGGAAAACGTCGAATGT
CAGCTGGTACTTTCCGCTTTACGGTGATCTGGCCGCCCCCACCGGTACCT
TTGATAACATACGGACATTGCTGAAAGACACGAATCTCAAACGAAAGAAA
CGAAAGCCTTTGAAGTGAAAGATGTATCTTTCATGTTCTTCGTGTTTCTA
AGAGAGACAACTTCAACTTTTCCCTGCTGGAAATAAAGAGGTAACTAAAA
CGACTCATCTAAAAACTAAAAACTTCATCTTACTTACGGAGTTTTGCAGT
TTCCCCTGATGTATATCATGAGATCCTAAGGTGTATGGTTTACCGTAATG
ATAATGACAGATATGTAAATTATTAGACGATTCGAATGATGTAACAATGA
TAAATGTGAGTTTCACTGTATTCTCATTCATTCTTTCGGAACGTAGGACA
ATAGAAAAATAAAATGTGTCTGGGAAGAAAGCGCAACAAAATCCATAATG
ATGAAAATCCTCATAATTTAAGCAAAATTTGGTGAACTAAAAAACTATTA
ATTGCCTTGGGAATGGAACAGGGAAGCTAGGTCGTATTGTATGAAATCTT
TTTATCTGGACAAT Coding sequence (CDS) from alignment at sc0000011:190366..193179- >TCONS_00001644 ID=TCONS_00001644|Name=TCONS_00001644|organism=Clytia hemisphaerica|type=CDS|length=1950bp|location=Sequence derived from alignment at sc0000011:190366..193179- (Clytia hemisphaerica)
ATGACTGAGACAAATTGTGATGAAGATTATCTGTTTGCAAACTTTGATAC
GACTACAAAAGAAGACACCATGGAAGATGGCGGTGGTGGAGGTGGAGGGA
ATGAAACAGCCACTGAAACAGAAGAGGAATATGTGCCAGCCCCAATCACT
TCAAAGCCAAAGAAATCTAAAAAGAGTAAACGAACTGGAGGTGATTTAGA
CGAAGCTCAAGTTAATGCCCAAAATAAATACATCAACGAGCTGGAACAGC
AAAATTTGAAGTTGAAATCTATTATTAAACGTATGTTAGGTCCACAGGTG
TTTTCCATGGTGAATGATTTACAAGGAGATGAGGAGATAGATCTTGTAAA
GAAACTGGAGAATGATATTCAGTCAAAACCCTTTGCTGTTGTCATGTTCC
TAAACAATGATATTTCAACCGCTCATCGTAAGGAAATCAACAATATCATG
CGCGAGGTCAGTGAAAAAGATGCCAAACAAGACGTCTTGATGGCTCATAA
ATTACAACCACAGAACTCTGCTATTCCTCTAAAAGCATTTACTACTAATC
TCAAAGGTAAACGTTGCAACCCTGGTAAAAATCAGGATGAGGAACCTTAC
ATTGTTTGTTCATGTCAGTATTTTAAGAGTTTTTACTTAGATCGACTTGG
TGTTCCACTGCTAGAAGATAACCCAAACCAAACAGATGTATTAGATGTAC
CAGCCTATCCACAGATTTTTAGTAAAGCCTTACCCATTGTCGAAGAGGCT
TTGAACGTGCGAGTCAAACACATGAAACAGTGTTTCAACTGTGGTGGCGA
GCATCATTTGAATGAATGCACTGAACCCAGAGATCACAACCGGATACGCG
AGAATCGTAACAAATTCGCCAGTAAAGGACCTCCTAAAATCAACTTCAAC
ATGGACACTGATGAACTAGATCCTCGCTTCAAACCATTCAAACCAGGGGT
AATCAGTGTTGGCCTGGAAGAGGCCCTCGGTATCTCTCTTAAAGAACAGT
TACCTCCTTACATCTATAAAATGAGAGAGCTGGGCTATCCACCAGCTTGG
GTGAGACCTGTAGATGATGATGGATTGAAAGTGTATGGAGCTGATGGAAA
TGTCATCGAAAATGCTGATTATGAAGAAGGAGAAATCAAACCTATCAATA
TCCCAGATATTGTTGAATACCCAGGATTCAACGTTCCTCCACCACAGGGA
GTGGCTGATGAATACGAAGCAATGGGAGCTCCTAAATTCAACAAAACAAA
CGCCGATTATGACGCCAGGCGGAAACGAGCGCAAATCCTGGGATATTTCG
AAAACGAGCACGGCGAACCTCTCGCCAAAAAATTGAAATTCGACGATTCT
GTCAGTATGGAAATTGATGAAAATACGGTTGATCTTGTCGACGGGAAACC
ACCACTTCCGCTGATTGACGTGACCGCTCGTCCGCCATCACCGGAACATG
ATACGGAAGAATCAAACAAAGAATCAACTGCTGAAAGTCAAGACGAAGAA
GTGTTCGCTGATGGAGAAGGCGGCGAAGAAACGAGTGGAAAAGACACGGC
AACCGAACAAGAAACGGAAGACGAAAGTGCCGTGACTGAAAAAGAAGATG
AATCAACGGATGCTGATAGTAACGGGAAAACAACGCGTCTGAGTTCTTCC
ACCAAGGACATCGATGATACAACTTACCGACATTGGTTTTCACAAGCGTT
CACAAGTAGTAAAGGACTCACATACACGATGTATACACCTCCCCCGCAAT
GTTTACAAAACGTCAAAATGTCAGACTTACCTAAAAACCCGGTCATTGAA
ATCGACCGTGAGCCGTGGAAAACGTCGAATGTCAGCTGGTACTTTCCGCT
TTACGGTGATCTGGCCGCCCCCACCGGTACCTTTGATAACATACGGACAT
TGCTGAAAGACACGAATCTCAAACGAAAGAAACGAAAGCCTTTGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001644-exon-sc0000011-1575043694:191952..193179 | TCONS_00001644-exon-sc0000011-1575043694:191952..193179 | Clytia hemisphaerica | exon |
| TCONS_00001644-exon-sc0000011-1575043694:190366..191563 | TCONS_00001644-exon-sc0000011-1575043694:190366..191563 | Clytia hemisphaerica | exon |
| TCONS_00001644-exon-sc0000011-1510915933:191952..193179 | TCONS_00001644-exon-sc0000011-1510915933:191952..193179 | Clytia hemisphaerica | exon |
| TCONS_00001644-exon-sc0000011-1510915933:190366..191563 | TCONS_00001644-exon-sc0000011-1510915933:190366..191563 | Clytia hemisphaerica | exon |
| TCONS_00001644-exon-sc0000011-1491911889:191952..193179 | TCONS_00001644-exon-sc0000011-1491911889:191952..193179 | Clytia hemisphaerica | exon |
| TCONS_00001644-exon-sc0000011-1491911889:190366..191563 | TCONS_00001644-exon-sc0000011-1491911889:190366..191563 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:190366..193179 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006568 | PSP_pro-rich |
Blast
BLAST of TCONS_00001644 vs. Swiss-Prot (Human)
Match: ZCHC8 (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2) HSP 1 Score: 177.563 bits (449), Expect = 1.363e-46 Identity = 117/351 (33.33%), Postives = 185/351 (52.71%), Query Frame = 1
Query: 262 INELEQQNLKLKSIIKRMLGPQVFSMVNDLQGDEEIDLVKKLENDIQSKPFAVVMFLNNDISTAHRKEI----NNIMREVSEKDAKQDVLMAHKLQPQNSAIPLKAFTTNLKGKRCNPGKNQDEEPYIVCSCQYFKSFYLDRLGVPLLEDNPNQTDVLDVPAYPQIFSKALPIVEEALNVRVKHMK-QCFNCGG-EHHLNECTEPRDHNRIRENRNKFASKGPPKINFNMD----TDELDPRFKPFKPGVISVGLEEALGISLKEQLPPYIYKMRELGYPPAWVR--PVDDDGLKVY-GADGNVIENADYEEGEIK-----PINIPDIVEYPGFNVPPPQGVADEYEAMGA 1260
I +L +N +LK + + P +VND + D P ++F+NN IS + +EI +N+++ E+ + L PQ S+I L+ + K + KN E +V S YF +F LD+LG PLL +NP ++ ++P Y Q+FS + + + + V+ K K CFNCG EH + +C PR+ RI E R ++ N N +E++ RF FKPGVIS L++ALG++ K LPP+IY+MR+LGYPP W++ +++ GL +Y G DG + + E GEI+ ++ +V YPGFN+ P+G+ DE+ G+
Sbjct: 60 IEQLRAENQELKRKLNILTRPSGI-LVNDTKLD---------------GPILQILFMNNAISKQYHQEIEEFVSNLVKRFEEQQKNDVEKTSFNLLPQPSSIVLEE---DHKVEESCAIKNNKEAFSVVGSVLYFTNFCLDKLGQPLLNENPQLSEGWEIPKYHQVFSHIVSLEGQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDK-SLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGT---DGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGS 387
The following BLAST results are available for this feature:
|
