TCONS_00001695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001695
Unique NameTCONS_00001695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001695 ID=TCONS_00001695|Name=TCONS_00001695|organism=Clytia hemisphaerica|type=transcript|length=1304bp
ACACATCTTGTAGCACAATTTGAACATCATCAACCGTTTATTTGTTGTCT
AATTTTTGCAATGGAGAAGGTAAACCCTGATGAAATGCTGCAATTCTTCA
ATCAAAAAAAGACTTATGAGGAAATCAAGCACATTTTGCAGAGTAGATTT
CCAGGTGAAAGAGGCTTTTCAATTATATCCATAAAGCGTTTTTGCAAAGA
TCATGGCATTTCACCACGCGTATCCACCAACTATTTGGAACATATCGTGG
CCACAGCAGCTGAAGAgGTTGGACCGACTTATGGAAGAAAGATGATGACA
GGATATATAGCCCATAAACACCAATTACGCGTTGGACATAACAGGATAGG
TCAAGCATTAGCCCACGTTGCTCCACAGAATCACTTGGCGAGAAGAACAA
ACACAGCCCGCTTAGTTAACCCTATTCCATATCGAGCAGATTATTTTGGA
CACAAAATACATTTTGATCAGAACGAGAAGCTGGTTATGTATGGAGTAAC
TCATGTCATAGCCGTTGATGGTCATTCAAGATTTATTGTTGGATATACGA
CAATGCCCGTCAAAAATAATGGTATCATTTACAACGAAGTGTATAGAAAA
GCAGCGATGGACTTTGGAATATTTCATCAAATGAGGGCTGATTGCGGAAA
AGAATTTTACCTATCACTTGGTATGCAAGAACTCTTCAAAGATTTGAGAA
GTAGACATGACATTTTACCATATCGCCAGACACAATCAAAGCAGAATCTA
CCAGTTGAGAGAATCTGGCCAGAAGTTAACTCCCGTGTTAATTACCCACT
AAAACGCATATTGGCAGACTTAGATAACCGACATATCATTGACATGACAG
ATGAGACTCAAAGGTTTTGCGTTTCATCTGTAACATGCTTGGTTGCAGCT
TTTGGGTTGAGGACAGTTGTATCTTCTTGGAACGAACATCCAATAGCAGG
TCGAGGAATACCATCTGTTATTAAAACAAGAACAAACCGTTTGACTCCGA
CCCCACAAAATGGTTTACCACCCAAACAAGAAGCTATAGAATTATACGAG
CAGACTTATCAAGGCAGACTAACAGATGAACATCCTTTTGGACGTGACCC
ATTGACTGGACATGATGATATCATTTCCGAGAGAGAccgattattttttc
aaagtttttctgtCCAAGATATTTTTACTAATTGTGTTAACCACAGGGGA
AATATGTTTAGAGATGCTATAATGTTTTACATACGAACTACTTTACAATT
TGAAGGAGCCttgtaatagttttatttgattttttcaaatatgaaAATAA
CGAC
Run BLAST on NCBI

protein sequence of TCONS_00001695-protein

>TCONS_00001695-protein ID=TCONS_00001695-protein|Name=TCONS_00001695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
THLVAQFEHHQPFICCLIFAMEKVNPDEMLQFFNQKKTYEEIKHILQSRF
PGERGFSIISIKRFCKDHGISPRVSTNYLEHIVATAAEEVGPTYGRKMMT
GYIAHKHQLRVGHNRIGQALAHVAPQNHLARRTNTARLVNPIPYRADYFG
HKIHFDQNEKLVMYGVTHVIAVDGHSRFIVGYTTMPVKNNGIIYNEVYRK
AAMDFGIFHQMRADCGKEFYLSLGMQELFKDLRSRHDILPYRQTQSKQNL
PVERIWPEVNSRVNYPLKRILADLDNRHIIDMTDETQRFCVSSVTCLVAA
FGLRTVVSSWNEHPIAGRGIPSVIKTRTNRLTPTPQNGLPPKQEAIELYE
QTYQGRLTDEHPFGRDPLTGHDDIISERDRLFFQSFSVQDIFTNCVNHRG
NMFRDAIMFYIRTTLQFEGAL
Run BLAST on NCBI

transcript from alignment at sc0000011:828301..833156-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001695 ID=TCONS_00001695|Name=TCONS_00001695|organism=Clytia hemisphaerica|type=transcript|length=4856bp|location=Sequence derived from alignment at sc0000011:828301..833156- (Clytia hemisphaerica)
ACACATCTTGTAGCACAATTTGAACATCATCAACCGTTTATTTGTTGTCT
AATTTTTGCAATGGAGAAGGTAAACCCTGATGAAATGCTGCAATTCTTCA
ATCAAAAAAAGACTTATGAGGAAATCAAGCACATTTTGCAGAGTAGATTT
CCAGGTGAAAGAGGCTTTTCAATTATATCCATAAAGCGTTTTTGCAAAGA
TCATGGCATTTCACCACGCGTATCCACCAACTATTTGGAACATATCGTGG
CCACAGCAGCTGAAGAGGTAAATGTTCTTAAATGTATTTATTGAAACCCC
TGAGCCCTAACAGCCCTAACCCTAAGCAAGTAGTGGATTTTTTTCCATAC
ACTTCGTTGTTTTTCACACATAAACATAATTGTCTAAAAACCTGATTTTA
GAAGCCGGAAATTTTTAAAAATCACCGGAACAGCCGAGAATCGCCAGAAA
AACTATTTTTATTGAATTTCTCGAGCTGTACTTAATATTTTTTTATGAAA
TTTTTCAAACTGATGTGAAGTGACAATATCTAAAATGTGACGGAGCCCGA
TTTTCAAAAAAGTTTTTTTCCAGCCGAAAATGCCGGAAAAAATAGTTTTA
GGCATTTTCTTGAGATTTTATCATTAGTTTTCTCTGATTTTTTGTAAAAA
GATGCACATTAGCATTGCCCAAAACATGTTCAAGACCGGTTTGAAGAAAA
AATTTTTTTTGGCAGATGATAATGCCGGAAATGGCAGTTTTCGTTTTTTT
TGATGACCATTTGTATTTGTTTTTTTTGGACCTACCTGGACGGAGGTCCT
ATAAATTAAGCTGCGTTTGTTCGTTCGTTCGTTCGTTCTTCTGTTACCAA
CTTTCCTCAGGATTGAATCATAGGCATCTTTTCATTTTTGGTACAAAGGT
GCAAAATGGTGGTGGTCAAAATATGACGGAGCCCAATTTTCGAAAAAATA
ATTTTTGGTGCAAAAAACGGCTAAAAACAGGTTTTTCGGACTTAGTGAAA
AATTGGATCATTTATTTTTTCTGATTTTTTGCATGAAGTAGTGTATGATA
GCATAGGTAAAAGATGGTACGAGCAGATTTTGTATTTTTTAAACAAAGCG
AATGTGACGGAGCCGATTTTCAGAAAAAAGATTTTTTGGGTAAAATTTCA
GCCAAAAAACAGCTATAAAGAGGATTTTTTTCGACTAGGTGTATATTGGA
TCATGGAGTTTTTCTGAATTTCTGCATTAAAGAAGGTCAAAGATGGCTCA
AGCAGATTTTCACAAAATTTCTGCTTGTTCGTTTATTGTAAGGCCGGGGA
GGGGGTACTAGGGTTGGCGAATGAGGGGTGTGTGCGGACAGGACCTCCGA
AAACCGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCTTAGAG
AGACTTTTTGGATTATTTTTTTAGATTTTTAGAAAAAGTCATACCCTTAG
AAAGACTTTATTACAATGTTTTTTTCGATTTTTGAAAAAAGTCATACCCT
TAGAGAGACNATTTTTTAGATTTTTAGAAAAAGTCATACCCTTAGAGAGA
CCAAGGACACTTGTATTACAATTTTTTCTCTGGAAATCAAAAAATTTCCT
AAAAATCCTGAATTTTCCGACCCTTAGAGAGACTAATTTAAAACTTTCTG
ATTTTTCCAACCCTTAGAGAGACTTTGAAAGGTGAAAAAACCGACCCTTA
CCGTCCGCACATACCCATCATCCATTTTTGCCTACAAAAAAATTTTACCC
CACCGGTCTTTTTGATAAAGAACTGCGTAGTTATTCCGGACTTAACGGTC
AATTTGAGATCCAAATTGGTCTAATCGCCAGTAGAACGCTCTCAGAAGAT
TAGTTCAAAACTTCATTATTTATTTTTGGTAGGTTGGACCGACTTATGGA
AGAAAGATGATGACAGGATATATAGCCCATAAACACCAATTACGCGTTGG
ACATAACAGGATAGGTCAAGCATTAGCCCACGTTGCTCCACAGAATCACT
TGGCGAGAAGAACAAACACAGCCCGCTTAGTTAACCCTATTCCATATCGA
GCAGATTATTTTGGACACAAAATACATTTTGATCAGAACGAGAAGCTGGT
TATGTATGGAGTAACTCATGTCATAGCCGTTGATGGTCATTCAAGATTTA
TTGTTGGATATACGACAATGCCCGTCAAAAATAATGGTATCATTTACAAC
GAAGTGTATAGGTAAAAAAGTCCAGGAAATAAGTCCATAATAAACGTACA
CGTACTACAGGTTTTGCTTCATAAGAACAAACAATTTAAACTTTTTTTAA
GAACAATTTTATAAGAACAATGAGGCTCAAAATCGCCAAAATACTGGTTT
TCAAAAAGTGTAAGGCTTTTGATGACCAAAATGTTCGGAACAAGTTAAGA
ACATTTTAAAGCTTTTGGGAATCATGAACATGGGGAATTAAGGCAGTCAG
GCCAGCTGTGTGGACCTGACTGAATGACGGAAAGGTGCCCAATAGTAAAA
CTTCAAATCAATTATCAAATACAAAACTTCGTGTGCAACTGATGACGTAA
TAAACACTCTTCAGACACTAAGGCACCTTTGAGCCAAATTCCAACAAAAT
ACTATTTTTCAGGTTTAGGGCACTTTTTGAGCTATTTCCTGCAAACTAGT
TTTAATAAGTATGCACTTTATAAGAATGTTCCTGAGGAAAATGGCCAAAA
AATTAAAAATGTGCGAAGAATATTACCATCATGGAATTTTGCTACAAAAA
TTCTGCAAAATATTTTATATTTCATTTCCCCAAAAAGTTAAGAATATCCA
TGATAAAATGTAATGGACACCATTCTTATAAAAAGCGTGTATTTAGGGGC
TCAAATGAGAAACCAATCATGTGGCAATTAAAAACGAGTGCAGCGAAACA
GAAGAACGTTGCAAAATGTAAAATTAAATTAAATTCCTAATTCTTATTTA
GAAAAGCAGCGATGGACTTTGGAATATTTCATCAAATGAGGGCTGATTGC
GGAAAAGAATTTTACCTATCACTTGGTATGCAAGAACTCTTCAAAGATTT
GAGAAGTAGACATGACATTTTACCATATCGCCAGACACAATCAAAGCAGG
TAAAACACCTTGTTTTCTACAGTATGATGTCAACAAAAATTAGGCCTCTA
TCTTTGAAGCGGTACAGCTTTTTGAATTTTTGGTTAAATTTGAATTTTTT
CAGATTGCAATGTAGATTTTTTTAGCCATTTTGAAAATATGAAATTTTAT
TAAAAATGTCAACAATTTTCGACAAAATTCAAGATTGAAACCCTGTTAGA
GTTCAGTGGTTCCTTTAGCATCAATAATTTCATTTTGTTTGTAAACCGTT
TTAAATAGGAACTTGTCCAAAATGTCCAAAATTTCCTGTCGATCTAAATT
TCTCGTGTGCTCGAACACCCACGAAGGCACCAACCCACGGACCCACGACA
CGCACGTAACCAACGTAATTTAGCTCACTCCTTCTTTTGACAGGTCGTGA
TCGTAAAACTGTTAAGAACAGAATATTCTATCAGAATACTGAATATCTTT
CTTCGTTAGGAGTGTAAAACCCCAACTAGAGTATGGCCTAATAGCCTGGA
GCTGTCTATGTGTAGACTACTTTCCTTTTTAACCCTTTAAGTGCCATGGC
TTTATTCAAATATAAAGACACTTTCTGTTTGCTGCGGTTTTCCAGAAAAA
CTATTTTTGTTTGCCGATCACTTAAAAATTGGTCATTACGAAATGTAGTC
AAGTATGCCAGATGCCTTAAAAAATGGTCATTTTCTGTTATTATTTTATT
TTCTGGTAAATGGAAAAAGTTTTCTGAAAAAACTCTAAAGAGCAAATAAA
GAGAAATTCGAGATGACCAGTTTTTAAGTCATCGGCATACCTTTTACATT
ATCGGATGACCAGTTATTAAGTCATCGGCACTTAAAGGGTTTATTAGATC
CTATCATTCTTAGACTATTCTAAATGGATTTCTTTTGGGCCGAAATTTAC
GTGAATGTTATTACTCAAAAAGAAATTTTTCAACCTCGCCCCCGTGTATC
CCCAGTCTTTATTTACGTTATTGATTGACCAAAAAGCTGATGACGAGGGA
CGAGGTTGTATATTTTTCTGCTTTTAGAATCTACCAGTTGAGAGAATCTG
GCCAGAAGTTAACTCCCGTGTTAATTACCCACTAAAACGCATATTGGCAG
ACTTAGATAACCGACATATCATTGACATGACAGATGAGACTCAAAGGTTT
TGCGTTTCATCTGTAACATGCTTGGTTGCAGCTTTTGGGTTGAGGACAGT
TGTATCTTCTTGGAACGAACATCCAATAGCAGGTTTGGGATATTCTAATT
CTGATTTTATGTTGCAATCTCTACCTCTCTAGCGATACAAGAAATAACCA
GCTCCTACTATGTTTCTTTTCTTATGCATAGAAAACCCTTCCAAACGCGA
GAAATCTTTAAGATCCATATCTCCTAAGGAAGTTTTTATATCACCTTTCA
GGTCGAGGAATACCATCTGTTATTAAAACAAGAACAAACCGTTTGACTCC
GACCCCACAAAATGGTTTACCACCCAAACAAGAAGCTATAGAATTATACG
AGCAGACTTATCAAGGCAGACTAACAGATGAACATCCTTTTGGACGTGAC
CCATTGACTGGACATGATGATATCATTTCCGAGAGAGACCGATTATTTTT
TCAAAGTTTTTCTGTCCAAGATATTTTTACTAATTGTGTTAACCACAGGG
GAAATATGTTTAGAGATGCTATAATGTTTTACATACGAACTACTTTACAA
TTTGAAGGAGCCTTGTAATAGTTTTATTTGATTTTTTCAAATATGAAAAT
AACGAC

Coding sequence (CDS) from alignment at sc0000011:828301..833156-

>TCONS_00001695 ID=TCONS_00001695|Name=TCONS_00001695|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at sc0000011:828301..833156- (Clytia hemisphaerica)
ACACATCTTGTAGCACAATTTGAACATCATCAACCGTTTATTTGTTGTCT
AATTTTTGCAATGGAGAAGGTAAACCCTGATGAAATGCTGCAATTCTTCA
ATCAAAAAAAGACTTATGAGGAAATCAAGCACATTTTGCAGAGTAGATTT
CCAGGTGAAAGAGGCTTTTCAATTATATCCATAAAGCGTTTTTGCAAAGA
TCATGGCATTTCACCACGCGTATCCACCAACTATTTGGAACATATCGTGG
CCACAGCAGCTGAAGAGGTTGGACCGACTTATGGAAGAAAGATGATGACA
GGATATATAGCCCATAAACACCAATTACGCGTTGGACATAACAGGATAGG
TCAAGCATTAGCCCACGTTGCTCCACAGAATCACTTGGCGAGAAGAACAA
ACACAGCCCGCTTAGTTAACCCTATTCCATATCGAGCAGATTATTTTGGA
CACAAAATACATTTTGATCAGAACGAGAAGCTGGTTATGTATGGAGTAAC
TCATGTCATAGCCGTTGATGGTCATTCAAGATTTATTGTTGGATATACGA
CAATGCCCGTCAAAAATAATGGTATCATTTACAACGAAGTGTATAGAAAA
GCAGCGATGGACTTTGGAATATTTCATCAAATGAGGGCTGATTGCGGAAA
AGAATTTTACCTATCACTTGGTATGCAAGAACTCTTCAAAGATTTGAGAA
GTAGACATGACATTTTACCATATCGCCAGACACAATCAAAGCAGAATCTA
CCAGTTGAGAGAATCTGGCCAGAAGTTAACTCCCGTGTTAATTACCCACT
AAAACGCATATTGGCAGACTTAGATAACCGACATATCATTGACATGACAG
ATGAGACTCAAAGGTTTTGCGTTTCATCTGTAACATGCTTGGTTGCAGCT
TTTGGGTTGAGGACAGTTGTATCTTCTTGGAACGAACATCCAATAGCAGG
TCGAGGAATACCATCTGTTATTAAAACAAGAACAAACCGTTTGACTCCGA
CCCCACAAAATGGTTTACCACCCAAACAAGAAGCTATAGAATTATACGAG
CAGACTTATCAAGGCAGACTAACAGATGAACATCCTTTTGGACGTGACCC
ATTGACTGGACATGATGATATCATTTCCGAGAGAGACCGATTATTTTTTC
AAAGTTTTTCTGTCCAAGATATTTTTACTAATTGTGTTAACCACAGGGGA
AATATGTTTAGAGATGCTATAATGTTTTACATACGAACTACTTTACAATT
TGAAGGAGCCTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000883XLOC_000883Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001695-proteinTCONS_00001695-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001695-exon-sc0000011-1575043694:832890..833156TCONS_00001695-exon-sc0000011-1575043694:832890..833156Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1575043694:830946..831274TCONS_00001695-exon-sc0000011-1575043694:830946..831274Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1575043694:830058..830205TCONS_00001695-exon-sc0000011-1575043694:830058..830205Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1575043694:828825..829029TCONS_00001695-exon-sc0000011-1575043694:828825..829029Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1575043694:828301..828655TCONS_00001695-exon-sc0000011-1575043694:828301..828655Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1510915933:832890..833156TCONS_00001695-exon-sc0000011-1510915933:832890..833156Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1510915933:830946..831274TCONS_00001695-exon-sc0000011-1510915933:830946..831274Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1510915933:830058..830205TCONS_00001695-exon-sc0000011-1510915933:830058..830205Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1510915933:828825..829029TCONS_00001695-exon-sc0000011-1510915933:828825..829029Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1510915933:828301..828655TCONS_00001695-exon-sc0000011-1510915933:828301..828655Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1491911889:832890..833156TCONS_00001695-exon-sc0000011-1491911889:832890..833156Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1491911889:830946..831274TCONS_00001695-exon-sc0000011-1491911889:830946..831274Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1491911889:830058..830205TCONS_00001695-exon-sc0000011-1491911889:830058..830205Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1491911889:828825..829029TCONS_00001695-exon-sc0000011-1491911889:828825..829029Clytia hemisphaericaexon
TCONS_00001695-exon-sc0000011-1491911889:828301..828655TCONS_00001695-exon-sc0000011-1491911889:828301..828655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:828301..833156 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226798	0.0947846	0.0733693	0.0717805	8.78227	6.4565	1.29131	1.67687	0.846382	5.68155	0.623681	0.323671	0.10774	0.156645	0.0919883	0.236922	0	0.0997186	0	0	0.0313259	0	0.222894	0.135095	0.904441	0.714054	0	0.0474132	0.251728	0.366388
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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