|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001775 ID=TCONS_00001775|Name=TCONS_00001775|organism=Clytia hemisphaerica|type=transcript|length=3657bpRun BLAST on NCBI protein sequence of TCONS_00001775-protein >TCONS_00001775-protein ID=TCONS_00001775-protein|Name=TCONS_00001775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1178bp RSFKRNDEIKLEKNTENSTIKMYRTLAADDDSHSTKPIFSIEGIRESHVERun BLAST on NCBI transcript from alignment at sc0000012:276459..300727+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001775 ID=TCONS_00001775|Name=TCONS_00001775|organism=Clytia hemisphaerica|type=transcript|length=24269bp|location=Sequence derived from alignment at sc0000012:276459..300727+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:276459..300727+ >TCONS_00001775 ID=TCONS_00001775|Name=TCONS_00001775|organism=Clytia hemisphaerica|type=CDS|length=3537bp|location=Sequence derived from alignment at sc0000012:276459..300727+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001775 vs. Swiss-Prot (Human)
Match: ERAP2 (Endoplasmic reticulum aminopeptidase 2 OS=Homo sapiens GN=ERAP2 PE=1 SV=2) HSP 1 Score: 424.091 bits (1089), Expect = 2.588e-129 Identity = 291/954 (30.50%), Postives = 477/954 (50.00%), Query Frame = 2
Query: 602 PYNETRLPSHLIPVEYDLHFNVDLNEDNFTGETKIKLHCETQTDKIIFHGRRFHPTNITVFSGRSIINIKRVSYIKRI-----EMFVVELESRLEEQSEYEVEISYTVDYGKNLAGLYKSYYEDFGIRKKMVS-THFEPTDARSAFPCLDEPFYKAVFHISVEHESNLTALSNMPVKQSSTSHDNKNLTVFEPTVKMSTYLVAFSVNEFKYSETSTPNGVKVRVYARHEDQERITYAVEAASKIIHFYGQFFNISYPLPKLDLLAVPEFMAGAMEDWGLVSFRSAYIVFDEKLSTIEQKRQVTLVIAHELAHQWFGNLVTMKWWNDIWLNEGFANYVELLGTDHVNPQFHSLDLEIPQGWQGALSLDSMKSSHPVMQEAEKPSEIDELFDAISYNKGAALLRMVQGFMGDQ-LEKGVIAYLQKYRYSNAETEDLLTSWSLTSHLNISSIMNSWINRRSFPIVTVTRLNQTTFHLKQQSFLAAKNDIEQRELSGNLSVGGKNTTSVPYSNSTSTKIARNMESRMEGSGNGTLQNSSKSTDDLLATKSHGSKQHSQGNGTDDTIWSIPFTYITDEDNSEKLLWFNEKETTLEVPETTKWLKGNMQVNGYYMVNYDNQTWNEIIQQLRANMSVFSANDRAGLIHDVFKLGCEKMIESILVLDLVKYMSKEVDFIPFSMXKMIESILVLDLVKYMSKEVDFIPFSMLRSRAECLSTLVQDKKLKLKYMKYIWYLQSNLIIPQMVRDRSDVSQFTTFERMQRFDTMSFGLKFNLSGELKNETRKVFDSLVSTNSSSDDISPENRALALMYGFNPNSTDHLSYLWKLFKESPLDSDRRILMRSIPQFRSQ--INQTLEKSLNTSITRVQDSISLLASLVKNGFRKEV-WDFFIKNYDVFHRRYG-GGYQMGQLFGEVAGGFTTQDMYKKVEKFLEDHPIGAKGSRSNML--VMEKIRNNI 3424
P+ E RLPS +IP+ YDL + +L +F KI++ T II H + TN T+ S +K +K + E + + +L +Y V + + G G YKS Y G ++++ T FEPT AR AFPC DEP +KA F I + ES ALSNMP ++ FE TVKMSTYLVA+ V +F T +GVKV +YA + + + YA++A+ K++ FY ++F+I YPL KLDL+A+P+F GAME+WGL+++R ++FD K S+ K VT VIAHELAHQWFGNLVTM+WWNDIWL EGFA Y+EL+ + P+ D + ++ ++ DS+ SS P+ + AE P++I E+FD +SYNKGA +L M++ F+G++ +KG+I YL+K+ Y NA+ +DL WS S+ + S S S P +T L +FL ++++ + L G +P + + + LQ + + A + + +W IP TY T N K TL++PE T W+K N+ NGYY+V+Y+ W+++I QL N ++ DR GLIHDVF+L + LD+ Y+ E S ++E + L+ +M R+ ++ L K+ L+Y K + I Q D+ V ++RM R + N + ++ + ++F + SS ++ L ++Y +T +YL + ++ S +++ ++ ++ + Q + + +E + + + Q+ +LL ++ + +++ WDF +N+ +++ G Y + + F+++D ++V+ F E + A+GS ++ V+E I NI
Sbjct: 63 PWQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFE-VITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDL---WSSLSNSCLESDFTSGGVCHSDPKMTSNML----------AFLGENAEVKEMMTTWTLQKG------IP------LLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQ-------------ERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHET-----SSPALLEGLSYLESFYHMMDR---------RNISDISENL---KRYLLQYFKPV-------IDRQSWSDKGSV-----WDRMLRSALLKLACDLNHAPCIQ-KAAELFSQWM---ESSGKLNIPTDVLKIVYSVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFES--LEAQGSHLDIFQTVLETITKNI 942 The following BLAST results are available for this feature:
BLAST of TCONS_00001775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.