TCONS_00002146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002146
Unique NameTCONS_00002146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002146 ID=TCONS_00002146|Name=TCONS_00002146|organism=Clytia hemisphaerica|type=transcript|length=3655bp
CGAACAACAAAACCAACCTGAAACGCAATTAATTCACATGCAAATATAAC
ATAGTGAATTTGTGAGATTACGTCATTTGAACTATTCTGTCAAACATATT
AAACCCCCCAACTTTATTGTTGATAGATCTTTGTTGGTATAATGTTTGga
taatttttgctttcaagaATGATTTGTCTTTTTCTTGCCACATTCGCTTT
TACTGCAGAGATTTACTGAGTCTTGGTCAAATTTTAACTACTATCAGAAT
TCTTACTCCAGAGATATATGGTTCGATATTACATTGgcaaaacaaaattg
atgaaTTAAAATCATGAGAGGTTTTATTGGTTTTGTTATCGTGCAATTTT
TGCTGGGTTTGTGTTGGTCCATCAGTCAAAAGATAGCACATGTTGAATTT
CATGAATATGAAGGCATTGACGACGATACTAGTTGCACTAGATGTAAAAT
GTCATTTGAATTTGAAGTTTCTTTAACATCAGACAGATCAAAGGTTCTTG
GGAAAAGTACTATAGCTCCATTCGATATTGATggtaaaacaaacaaattc
aCAATCAACAGTGTCATCATATTTGATCTTGATAGATTTGGGGTGTCATA
TGATATCAAAGCTGAAATCAAAAGACATACTGGCAGAAGATACGAAGTTG
TTACATCATTGGATAGCTTGAACAAGACATTTAGTATTGATAGCTCACAA
GCCACTGGCAAAAACATTGACGGTGACATCGATAAAACGGCTAGTGGTAA
AGCAAGAACCATTAAATGGGAATTcagagtTTATTGTAACGATAGTGATT
ACCTTCTACCAGACTGCACCATCGAACGATGTGTACCACGTGATGATACG
AATGGTCATTACACGTGTGATTCTCAAAATAATAAAGTTTGTTTACAAGG
CTGGGTGGACGCCACGACGAATTGTGTCACTCAAAACGTTACTAAACCAT
CAATCAGCTCCAGCATCGCAGTATCTCAATCAACATCAATATCATCGTTA
GCAGTGAAAACGTCATCAATTGAGCCTTCTTTCTCAGTATTGGCAACTTC
ATCGATGCTACCATCCTTCACACCATCATCTCAAATAGATGAAACCTCTC
TCTTGGCAACTTCATACAATACAATATCATCAGATATGTTCTCTACATCA
ATCTCTTTTATTGGATCGTCAACATCATCACTAATGGTTCTAGAAACTTC
ATTGTCATCAGCTGTGGAAACTTCAATGGCATCATCTCCAATAGATCTGG
AAACTTCGTCATCACTTATCTTTGAATCTTCATCAGTATCTTTACCAATA
ACTTCATCCCCAATTTTACCAACAACACAACAATTCAGTTCTTCAATCAA
TATGGAATCAACATCGCCTACTCCCTCAACAACCCTTTTCTTAGAATCAA
GTTTTTCTTCATCAATGAACAGTAAGGCGATGTCAACTATCATACAGAGT
ATCTCAATGACATCAATATCATCAAGCTTTATGGAATCTTCAAACACTTC
TTCGAATAAAACCTCTGCATCAACAACCAATAATCTTTCCATCATTTCAA
GCAATGTCACCGGAGAAAAACCAACCATTTCATCAACAATGTTTCTACCT
TTGAAACCAGAATCAATCCAACCATCAAATGCGGCAACCTTACCAGCAAG
TAGTACAATAGTAATAGTTTTGCCAGGCAAACCAGTTCAAGTGACCAGGG
CTGATGACAAATGGAAATGGATTTTGATCATTGTTGGTTCATCTGCTATA
TTCCTGATATTTCTACtgtgttgttgtttttgctGCCAAAGAAGAAGATT
ACGCAGGAAATTAGAGCAACACGAGGCACAAATAGAAGAGCTTCGTGAGA
TGTCTAGAAACAATAACAGTAGTTTACGAGGGCGAACATATTCCAACGTT
TCTCTTGACAAAGAAGAGGCTATTCAACGTCATGAAAAGAACAAAGACTT
ATTAGCTCAGGACGGTAGTGAATTTATTGGTTTTACCAATGAAATGTTTC
AACCAGACACATCTCGAACTGAGGTTCGTAGGCCTTCTTTAGGACCTTCG
AGATTACAGCCACCGCAGAAAAGATCAAATCGTATCCCTTCGTTAAGCGA
TGCAGCCTTATTCCCTCACCCGCCTTTTGATTTTATGAACCCTCTACATG
AAGACGAACATAAAGGGAAACCTCGATCATCTTCTCCAGCCAATGCGGTA
CAAAAGAATGGAAATCCACAAGATGCAGGTCCCCCATCGCCCCCGCCAcc
accaccacctccaccaccagcTCAACCACAAACACCGGTCAAAATTCGTT
CCAGCACTCTCAACTCGTTAGATCGATTTCAACAGCAACAAAATACATCG
CCTATGGATTCACTGCTCGgtgaattcaaaaagaaaatatcagttaCTGA
GGCTCCAAGCAATGACCAAATAAGACCTGTCAGAGCTTCTACGTTCTCAA
AGAACGCTCATAAAGACACACCAAGTAAACCTCGAAGAACAGCGACTGAT
GTGAATAAATTACCGACTGCTAAAAAACCGAATAGAATGCCAGCTAAGAA
AGCAATGAATGGACATGTTAATGGTGATACAAATGAGAATGAATTTGAAG
GATTTTATAATAGAACTTTTAACCCTGAGATGAACGAATCTGCAAGTCGA
TTCTAGAGAAAGAGCAACTGTTGGAAAAAGACTTTGGGTAGTCTTTGTAA
GCCGTGCTTAAAAGCAAAATTTGTTTCCATTTCTCATATTACGAAGGAAC
AATGGATATTTGAGAAAGATTAAGTCCTGGGGGGGCACTACTGACTTTGA
CGGCCGACGtagacgtgccgctggagtctGAAAAGTGTACCCTGTCAGAC
ATGAATTTTTGGTGAATTTGGAATTTGGATTTTCACCCTAAAAAGATGTT
TATTTCGTGAGTGTCTTTGAAGTGAAAATCTTCAATCTGGCTTATCTGTA
GGACAGAACATtaatacacatcttgaaaattagtaaatttgggactaTGT
CGgatcagatatcttcagagcctaaaaagggGGGAACCAACCAGCTAACC
AGCGGCACATCCCTGTATCCAATTTTACCTAAGAGCCCCCCGACATCAAA
GTTTAACTGACGAGCCTCAAAGACACTCATggaattaaaacaaaagaaga
aaatgttgatctgATTGAAAGTTTCATGTTCAAACCATGGGAACAAGGTC
ATGTAAATTACTTTTGGATAAAGCTTTTTTTCAAGATTCGTGTATATAAA
TTTTAACGTTTAAATGTGAAATTCTAGTCTCGTATTTGTATAAAGtgaaa
aatcaaacaattttacAGACTACTTTGTACATATTGTAGATGGTAGAAAA
TTGTGAGAAATTCAACAGTCGATAATGATAGATGAATATGTTGAGTGCGT
GGAAACTGTTTTAATGATCTTTAAGGGGTCTTTAGGCCTGGTTTAGCCAA
TCGGCAATTGACAAGCATTGAATGAACTGAACATAAATAAAGGATTCATT
TCTTCATTCAGAAATGGAAATTCCCGGATTCAATGCGCTCCTGTTAAGCT
AGCCTAatcggggctttgaaatcaatagGATAGACActagtctttttttt
ttgctctttttctcaAATTGCAATTATTTGTCATTCTGTcgaacttcaaa
ttttt
Run BLAST on NCBI

protein sequence of TCONS_00002146-protein

>TCONS_00002146-protein ID=TCONS_00002146-protein|Name=TCONS_00002146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=780bp
MRGFIGFVIVQFLLGLCWSISQKIAHVEFHEYEGIDDDTSCTRCKMSFEF
EVSLTSDRSKVLGKSTIAPFDIDGKTNKFTINSVIIFDLDRFGVSYDIKA
EIKRHTGRRYEVVTSLDSLNKTFSIDSSQATGKNIDGDIDKTASGKARTI
KWEFRVYCNDSDYLLPDCTIERCVPRDDTNGHYTCDSQNNKVCLQGWVDA
TTNCVTQNVTKPSISSSIAVSQSTSISSLAVKTSSIEPSFSVLATSSMLP
SFTPSSQIDETSLLATSYNTISSDMFSTSISFIGSSTSSLMVLETSLSSA
VETSMASSPIDLETSSSLIFESSSVSLPITSSPILPTTQQFSSSINMEST
SPTPSTTLFLESSFSSSMNSKAMSTIIQSISMTSISSSFMESSNTSSNKT
SASTTNNLSIISSNVTGEKPTISSTMFLPLKPESIQPSNAATLPASSTIV
IVLPGKPVQVTRADDKWKWILIIVGSSAIFLIFLLCCCFCCQRRRLRRKL
EQHEAQIEELREMSRNNNSSLRGRTYSNVSLDKEEAIQRHEKNKDLLAQD
GSEFIGFTNEMFQPDTSRTEVRRPSLGPSRLQPPQKRSNRIPSLSDAALF
PHPPFDFMNPLHEDEHKGKPRSSSPANAVQKNGNPQDAGPPSPPPPPPPP
PPAQPQTPVKIRSSTLNSLDRFQQQQNTSPMDSLLGEFKKKISVTEAPSN
DQIRPVRASTFSKNAHKDTPSKPRRTATDVNKLPTAKKPNRMPAKKAMNG
HVNGDTNENEFEGFYNRTFNPEMNESASRF
Run BLAST on NCBI

transcript from alignment at sc0000018:561257..570057-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002146 ID=TCONS_00002146|Name=TCONS_00002146|organism=Clytia hemisphaerica|type=transcript|length=8801bp|location=Sequence derived from alignment at sc0000018:561257..570057- (Clytia hemisphaerica)
CGAACAACAAAACCAACCTGAAACGCAATTAATTCACATGCAAATATAAC
ATAGTGAATTTGTGAGATTACGTCATTTGAACTATTCTGTCAAACATATT
AAACCCCCCAACTTTATTGTTGATAGATCTTTGTTGGTATAATGTTTGGA
TAATTTTTGCTTTCAAGAATGATTTGTCTTTTTCTTGCCACATTCGCTTT
TACTGCAGAGATTTACTGAGTCTTGGTCAAATTTTAACTACTATCAGAAT
TCTTACTCCAGAGATATATGGTTCGATATTACATTGGCAAAACAAAATTG
ATGAATTAAAATCATGAGAGGTTTTATTGGTTTTGTTATCGTGCAATTTT
TGCTGGTAAGTTTTTACTCATATTCTCAGATTTAGTTTTCTGTCCTCCTC
AGAGTTGGTAGTGTATCTCACATGTGATGTTTGTTAGAACTCTACGGCAA
TGAAGTTTCCATAGATATTGAATCTGGTTACTGATCTTAGAGATAGAAAA
AAGAAAAAAAGTTCCTTATATTGGATTTAATCATCCATCCCACCTCTCCT
GACCCTTTAAGGATTACCAAGGGGAGTTGTAGGGTTTAGAAATACCGTTT
TCCCGTCAAAACTTTAGCTGAATCCCGGAATCCCCAAAATTGAAAAAAAT
CATAACACCGTCACACTGATTTGTATAGAGGCTAAAACAGCAGAATATTG
ACTAAAAATAAGGCTAAATACCGTCACTGTCTGGTTCTAATATACCGTTT
TTCCGTCTCTTTTTTTGTCAAACCCCTAAAAAAGGCCCATCCGTCCCACC
GTAAAAGTACAACCCCCCCCTAACAAAGCCTCTGACTTTATCAGCCTTTC
TTCAGAAGTGCATTGTAAGTGTAAAATGAAATTGTGCACTGTAAGGGTGT
AAAAAATAAAAAAGCGAAGTTTTTTGGGCAAATGTTTGGAAAAGGCACCG
CAAGGCTTGATTTTTCGTCCAAATTTCCTCGCCTATACGGTATTATTCTG
ATCAACCACCCACCTCCCTCATGACAAGACCGATAAGAAGTGGATCTTGA
ACCCCTTGTCAGCTTGTTAGGTTCGTGTTGTCAATAAAAACCCTCTCTCC
AATCAAGTTAATACTATTAAAGGGCTCTGACCATAGTCGGAAAATTGATT
TTAGTATTTGAACATAAAAGTTATGTTTTAGGTTCTTTAACACTTTTAAC
AAAGAATTGTCTTTATAAATTGCTTTTAAATCAAACCCCTTAGGAGTAAT
TAAGAATTTAATTGTAAAAATGACGTTATGAACTTTAAAAAGACGTTAAT
AACATGTTGCGGTACCTTCTTTTATAAAAAATGCTAAGTTTTAATGGGTA
ATTAACCTTTTTGTTTCGAAGTTTTTTCAAACTGTCTGTAAAGAATTCAA
ATGTTTTAAATTTTTCGGAAAAATTTTCTAAATTAATGCATCAAAAGTTA
TGGCTGTTTTTCTATGAAAAATTGGGATGGAAAATTGTTCAAAAAGCACT
ATTTTCAAGATTTTGAAGTAAATAAGCATTTGGAAAAATGTTCCGAAAAA
TTGAATTTAGTTCGATAAAAGATACACCACACCAGCTACCGCAAAAAAAT
TTTCAAAATATTTTTTTAGCCGAAACTAAGCTCTTCAAAGTTGAAATACT
CTTCTTCGCAAAAGTCTTCCATTTTCTTTTTTTTTTCATCAATTTTTTTC
ATTGCGATTATTATAAATTTTCAGACTCACGGATAATTGGCCTAACAGAA
AATGTATAACATGCTACAGTTTTGTGGGCTACATCAAGTAGAACTTTATA
TTTTGTAAGTGGCAAATATTAAAAATTCACTATGGTCAGAGCCCTTAAAT
CATTTGACAATTTCTTTTAGGGTTTGTGTTGGTCCATCAGTCAAAAGATA
GCACATGTTGAATTTCATGAATATGAAGGCATTGACGACGATACTAGTTG
CACTAGATGTAAAATGTCATTTGAATTTGAAGTTTCTTTAACATCAGACA
GATCAAAGGTTCTTGGGAAAAGTACTATAGCTCCATTCGATATTGATGGT
AAAACAAACAAATTCACAATCAACAGTGTCATCATATTTGATCTTGATAG
ATTTGGGGTAAGTTTGAGGGTTTGGAGATTCCCAGAAATTTAAAATGAAG
GTATGACTAATTCTTACAAAAATCATGGACAACGGCAACTTTTAAGTTGG
TTACGTCGAAGAGTCAGATAAAGGTTACTCGAAATTCAAACTTTGAAAGT
ATGTACATCACAGGTTGCGCTACTAAAAGGTTGTCCAATGAACAAAGCCA
AAAAAGGTCTGAGAAAGACCTTGATTTCTTGATACTCTGTCAAAGATAAA
TCACTGATGGTGTTAGAATATTGACTTGACGGAGGTGGACATGGTGATTC
TTAATCAACAGAGCAATTGACTCCACTAACGTAATAAGCAATACAATTCA
TAATTGCTTTCAGCCAAAAAATTTTCCACTTAAGTACCTCTTTTTTGATT
ACTCAGGTGTCATATGATATCAAAGCTGAAATCAAAAGACATACTGGCAG
AAGATACGAAGTTGTTACATCATTGGATAGCTTGAACAAGACATTTAGTA
TTGATAGCTCACAAGCCACTGGCAAAAACATTGACGGTGACATCGATAAA
ACGGCTAGTGGTAAAGCAAGAACCATTAAATGGGAATTCAGGTAAACTTT
TTTTTGATAGTCAATAATCAATGAACTTTAAAAAAACGTATAAAAATCTC
CATATTCTCCTGCTGTATAACAAATGAAAATTAATTATGTTCATTTCAGT
ATCCCGTGGTCGACATCAACTAAATTGCTCGTAGACCAAAGAAAGAATAA
AGACTGAACCCGACAATCTCAGAAAGCCAGTTCTGGGGTTCAGAACTCCA
CTCGTGAAATCCGTGACATCCTGGCCTTTAAGATATTGAATTTTTTCCGT
TGCTATAAATTTTAGCGTTTCTGGAAAGAATTTTTACATCAGGTGCCAGA
CAATTTGCTACCGATGATGATGTCTGACGGAAAATTGGAACCAAGAGTCT
CTTAGTTCGCATTTTGATAATGCTGATACAGTAGCACTCTCGAAATGTTG
ATTGTTCCAGCGTTTATCAGTAAAACCAATAGTGGTGCAAGTAGCTCTGG
ATACAAGATTCGTTAGGCTACGCGCATCCCCTCTGATATGTTTTGATTTA
GGGAATGAATTTTGTATGTAAAATTCCCGTCCGAGAGCTAACCCCCTGTC
TTTGTGTATTTTGAGATATTTAAATTTCATCAAAATTGAATTAAAAATTT
GAATGGCTAGAGGTTAATACAATCACTGGATTTCTGAACCTTTTTAAGAA
AACTAAAGCAGGCTACCCCAAAGTTAGGGGTAACTCTCGGACGGGAATTT
TATACATAATACACATCCCCTATATCTAAACATATCAGAGGGGATGCGTG
CAGCCTAGAAATTAGTCTGACGAACAAATTTGCTTCACTTTTTAGAAACG
ACTTTGATTTTATTTTTTCAGAGTTTATTGTAACGATAGTGATTACCTTC
TACCAGACTGCACCATCGAACGATGTGTACCACGTGATGATACGAATGGT
CATTACACGTGTGATTCTCAAAATAATAAAGTTTGTTTACAAGGCTGGGT
GGACGCCACGACGAATTGTGTCACTCGTAAGATTTTATTTTTCTAAATGT
TTAAGGTACAATTCAATGGGATTTTACCCCGATCGGGGGTCACTCAGGCA
GAATCAGGTATGGGAAGATGCCTCTGATTAGGGTTTCTAATAAATATCTG
AGTGTCACAAATTCATTAAAATTTGAAAAGTGTATCCAATAGGGTCGACT
TTTGGTTATTTTTACCATATGTCAGGGCGGGTTTCGTAGGAAATAGGAAA
TTTTCTATGATATGGTCCAAATTTAATCGAAAGGGTAAAAAAGTTGCTTA
ATCTTGGTTATTATCCTGACAGTTTTAAATTGAACAGCAGCAGTCAAGAT
AATCATTCTCCGGAGAAATCTCAGCCTGAACTTAGCATCAAATTAATTAG
AAACAAGCCGGAGAGCTGAGAATCCGAAAAACTCAAGTCCAAATACACCT
TTTCGTTGTTTTCGTTTTCGACCGTAGCCGCCAATTGCCGCGCGGGTATT
TTTTTTTCCGCTTTATCCCACTAAAACCGTCCCAGTCTTTTTCTCGCACC
TATAGACAGTAGAAAAACGTGTCAAAAAAGGATTGGATTGAGTTTAGGGG
GATAATTATAAACAATTACGTGGCACGCGCCTGACCGCGCGACTACGGTC
GAAAAGGTGTATAGCTTGATTTCTTTAATTTTTGCTTTCTAAGTTAGTTT
TAGTGAGATCCGAGGTAAAGCTCGTTTACTTCAAAAATCGAATGCGTATA
TTTTATGTAAGGACTCGGAAAACCAGAATTCTAAAATCAAAATTCAAGTT
TCAAAACATGACGTCATCAGAGAAGATATTAACACGAGACATAAGTAACA
CCTTGTCACTTTTGAACGCTTTTCAAGTTTATTCTTTCATCGAGTTTCTT
AAATACAATTTGATACGACAAAAGCAAAAAACTAATACGACAGTTGATTG
ACCGAAAATAGAACTCGTGACTAATAAGCTAACACATGAATTTGGTTTTG
ATTAAACTACAATCCAAATACTTCAGCATTAAAAAGTGTTGTTAACTTTA
AGACTTGTCTAACCGACATGATAGAAATGATTAGATTTTTATTTACCAAA
ACGTTAAAAAGACATCCTCTGCTTTGGTTGGATTCATATTAATTTTATCA
CCATCTGCTTAAACTTTCTTCCCAGTACATCGTACTCTGTACCAGAGTGT
ATCTCAAGTTTATGGTTTAGTAAAAAAATTCCGTACGGAAACCTCTGTGA
TGAAGTATGATTTACAAATAGTAACACTTCTCTTGTCGTCTCCCCTGTCT
CACCCGCACTCTATCGCGGCGGTCTGTTTGAAAAATCTCAAATCAGAACA
GACAATGACAACAGACCCTCTACGGCAATGAATTTTGAAATTTAGCCGTA
GATATCGGGTCTGTGTACAGATTAAGGCCACCGAGACAAGATAAAGTTGT
GAGCTCGATCACGCATTCAAGTAGAAATCATCCCACATGTATGTCGGATC
GATTTCACAATCTGGTCCAGAATGTCGATCGATTGGTTGCTGTTGGAGCC
CTCTTGAAAATGACTCAACCGAACCATGGTGCTTTTATAGTAGGTGCAAT
GATTGGTTGGATAACACTACCCCGTTTCTTAAACTTATTGGTGATTATAC
CATCCTTACTCTATCTCACCAACAGTTTGCCAAGGTTTGCATAGCAATCG
TACCAACTATTTTCCCTTGAAAATTTGGTCTAAGGAAAGCCTACTGAAGT
TATATTGAGCCTAGCCTAAAGAATGATACTTAAAAGATCGTTCAAAACTT
TAACTTTGTTGAGTCTTCTCTTGATCATTGGAGATTCAGAAGAAAATCGC
CCACAAAAACTAGAAAAAAGTGTTAATTTATAAAAAAGTGCCTTTTACAT
ATTAACCGAATCAAAAATCTCAAATAACAGGCAGAATTGTGTGTAACCTT
ATATCTTTCACATTTGACTGATTGTCTTATACAATATCCTAACATATTAA
GATCCTCATTCATTAGAAACCACTTTATTTTTTGTACTTTTTGTATAATA
GAAAACGTTACTAAACCATCAATCAGCTCCAGCATCGCAGTATCTCAATC
AACATCAATATCATCGTTAGCAGTGAAAACGTCATCAATTGAGCCTTCTT
TCTCAGTATTGGCAACTTCATCGATGCTACCATCCTTCACACCATCATCT
CAAATAGATGAAACCTCTCTCTTGGCAACTTCATACAATACAATATCATC
AGATATGTTCTCTACATCAATCTCTTTTATTGGATCGTCAACATCATCAC
TAATGGTTCTAGAAACTTCATTGTCATCAGCTGTGGAAACTTCAATGGCA
TCATCTCCAATAGATCTGGAAACTTCGTCATCACTTATCTTTGAATCTTC
ATCAGTATCTTTACCAATAACTTCATCCCCAATTTTACCAACAACACAAC
AATTCAGTTCTTCAATCAATATGGAATCAACATCGCCTACTCCCTCAACA
ACCCTTTTCTTAGAATCAAGTTTTTCTTCATCAATGAACAGTAAGGCGAT
GTCAACTATCATACAGAGTATCTCAATGACATCAATATCATCAAGCTTTA
TGGAATCTTCAAACACTTCTTCGAATAAAACCTCTGCATCAACAACCAAT
AATCTTTCCATCATTTCAAGCAATGTCACCGGAGAAAAACCAACCATTTC
ATCAACAATGTTTCTACCTTTGAAACCAGAATCAATCCAACCATCAAATG
CGGCAACCTTACCAGCAAGTAGTACAATAGTAATAGTTTTGCCAGGCAAA
CCAGTTCAAGTGACCAGGGCTGATGACAAATGGAAATGGATTTTGATCAT
TGTTGGTTCATCTGCTATATTCCTGATATTTCTACTGTGTTGTTGTTTTT
GCTGCCAAAGAAGAAGGTCAGTTCTACATTGTGCACACCTCTATATCAGA
AACCATGGCCTCACACCCCCTTAAAAACTCGATCAATTTCCTTTGAACAA
AATACCTCCGCATTTTTACTTTATTGGAATACTATCATGTGCTTTTACCC
TGAAAATCGTCGAGAAAATTGTCATACCTACCCAATGAAAGCATAGGGAA
TGCTATCCCCATTAGAATTGTACTTTTTCGCTTTTTCCCATTCTTCTAAA
AGGATTCTGAGCGTGTCACTTAGATAAGAGTGGTTTTACAATTTTTCGAA
AGGAATAGAAGAGGAAACCCAAGTACTTTATTTTCTGACTAGTACACATA
CCACAGCCTCATATTAAACGATATCCCTTTCTTCTTACTTTAGATTACGC
AGGAAATTAGAGCAACACGAGGCACAAATAGAAGAGCTTCGTGAGATGTC
TAGAAACAATAACAGTAGTTTACGAGGGCGAACATATTCCAACGTTTCTC
TTGACAAAGAAGAGGCTATTCAACGTCATGAAAAGAACAAAGACTTATTA
GCTCAGGACGGTAGTGAATTTATTGGTTTTACCAATGAAATGTTTCAACC
AGACACATCTCGAACTGAGGTTCGTAGGCCTTCTTTAGGACCTTCGAGAT
TACAGCCACCGCAGAAAAGATCAAATCGTATCCCTTCGTTAAGCGATGCA
GCCTTATTCCCTCACCCGCCTTTTGATTTTATGAACCCTCTACATGAAGA
CGAACATAAAGGGAAACCTCGATCATCTTCTCCAGCCAATGCGGTACAAA
AGAATGGAAATCCACAAGATGCAGGTCCCCCATCGCCCCCGCCACCACCA
CCACCTCCACCACCAGCTCAACCACAAACACCGGTCAAAATTCGTTCCAG
CACTCTCAACTCGTTAGATCGATTTCAACAGCAACAAAATACATCGCCTA
TGGATTCACTGCTCGGTGAATTCAAAAAGAAAATATCAGTTACTGAGGCT
CCAAGCAATGACCAAATAAGACCTGTCAGAGCTTCTACGTTCTCAAAGAA
CGCTCATAAAGACACACCAAGTAAACCTCGAAGAACAGCGACTGATGTGA
ATAAATTACCGACTGCTAAAAAACCGAATAGAATGCCAGCTAAGAAAGCA
ATGAATGGACATGTTAATGGTGATACAAATGAGAATGAATTTGAAGGATT
TTATAATAGAACTTTTAACCCTGAGATGAACGAATCTGCAAGTCGATTCT
AGAGAAAGAGCAACTGTTGGAAAAAGACTTTGGGTAGTCTTTGTAAGCCG
TGCTTAAAAGCAAAATTTGTTTCCATTTCTCATATTACGAAGGAACAATG
GATATTTGAGAAAGATTAAGTCCTGGGGGGGCACTACTGACTTTGACGGC
CGACGTAGACGTGCCGCTGGAGTCTGAAAAGTGTACCCTGTCAGACATGA
ATTTTTGGTGAATTTGGAATTTGGATTTTCACCCTAAAAAGATGTTTATT
TCGTGAGTGTCTTTGAAGTGAAAATCTTCAATCTGGCTTATCTGTAGGAC
AGAACATTAATACACATCTTGAAAATTAGTAAATTTGGGACTATGTCGGA
TCAGATATCTTCAGAGCCTAAAAAGGGGGGAACCAACCAGCTAACCAGCG
GCACATCCCTGTATCCAATTTTACCTAAGAGCCCCCCGACATCAAAGTTT
AACTGACGAGCCTCAAAGACACTCATGGAATTAAAACAAAAGAAGAAAAT
GTTGATCTGATTGAAAGTTTCATGTTCAAACCATGGGAACAAGGTCATGT
AAATTACTTTTGGATAAAGCTTTTTTTCAAGATTCGTGTATATAAATTTT
AACGTTTAAATGTGAAATTCTAGTCTCGTATTTGTATAAAGTGAAAAATC
AAACAATTTTACAGACTACTTTGTACATATTGTAGATGGTAGAAAATTGT
GAGAAATTCAACAGTCGATAATGATAGATGAATATGTTGAGTGCGTGGAA
ACTGTTTTAATGATCTTTAAGGGGTCTTTAGGCCTGGTTTAGCCAATCGG
CAATTGACAAGCATTGAATGAACTGAACATAAATAAAGGATTCATTTCTT
CATTCAGAAATGGAAATTCCCGGATTCAATGCGCTCCTGTTAAGCTAGCC
TAATCGGGGCTTTGAAATCAATAGGATAGACACTAGTCTTTTTTTTTTGC
TCTTTTTCTCAAATTGCAATTATTTGTCATTCTGTCGAACTTCAAATTTT
T

Coding sequence (CDS) from alignment at sc0000018:561257..570057-

>TCONS_00002146 ID=TCONS_00002146|Name=TCONS_00002146|organism=Clytia hemisphaerica|type=CDS|length=2343bp|location=Sequence derived from alignment at sc0000018:561257..570057- (Clytia hemisphaerica)
ATGAGAGGTTTTATTGGTTTTGTTATCGTGCAATTTTTGCTGGGTTTGTG
TTGGTCCATCAGTCAAAAGATAGCACATGTTGAATTTCATGAATATGAAG
GCATTGACGACGATACTAGTTGCACTAGATGTAAAATGTCATTTGAATTT
GAAGTTTCTTTAACATCAGACAGATCAAAGGTTCTTGGGAAAAGTACTAT
AGCTCCATTCGATATTGATGGTAAAACAAACAAATTCACAATCAACAGTG
TCATCATATTTGATCTTGATAGATTTGGGGTGTCATATGATATCAAAGCT
GAAATCAAAAGACATACTGGCAGAAGATACGAAGTTGTTACATCATTGGA
TAGCTTGAACAAGACATTTAGTATTGATAGCTCACAAGCCACTGGCAAAA
ACATTGACGGTGACATCGATAAAACGGCTAGTGGTAAAGCAAGAACCATT
AAATGGGAATTCAGAGTTTATTGTAACGATAGTGATTACCTTCTACCAGA
CTGCACCATCGAACGATGTGTACCACGTGATGATACGAATGGTCATTACA
CGTGTGATTCTCAAAATAATAAAGTTTGTTTACAAGGCTGGGTGGACGCC
ACGACGAATTGTGTCACTCAAAACGTTACTAAACCATCAATCAGCTCCAG
CATCGCAGTATCTCAATCAACATCAATATCATCGTTAGCAGTGAAAACGT
CATCAATTGAGCCTTCTTTCTCAGTATTGGCAACTTCATCGATGCTACCA
TCCTTCACACCATCATCTCAAATAGATGAAACCTCTCTCTTGGCAACTTC
ATACAATACAATATCATCAGATATGTTCTCTACATCAATCTCTTTTATTG
GATCGTCAACATCATCACTAATGGTTCTAGAAACTTCATTGTCATCAGCT
GTGGAAACTTCAATGGCATCATCTCCAATAGATCTGGAAACTTCGTCATC
ACTTATCTTTGAATCTTCATCAGTATCTTTACCAATAACTTCATCCCCAA
TTTTACCAACAACACAACAATTCAGTTCTTCAATCAATATGGAATCAACA
TCGCCTACTCCCTCAACAACCCTTTTCTTAGAATCAAGTTTTTCTTCATC
AATGAACAGTAAGGCGATGTCAACTATCATACAGAGTATCTCAATGACAT
CAATATCATCAAGCTTTATGGAATCTTCAAACACTTCTTCGAATAAAACC
TCTGCATCAACAACCAATAATCTTTCCATCATTTCAAGCAATGTCACCGG
AGAAAAACCAACCATTTCATCAACAATGTTTCTACCTTTGAAACCAGAAT
CAATCCAACCATCAAATGCGGCAACCTTACCAGCAAGTAGTACAATAGTA
ATAGTTTTGCCAGGCAAACCAGTTCAAGTGACCAGGGCTGATGACAAATG
GAAATGGATTTTGATCATTGTTGGTTCATCTGCTATATTCCTGATATTTC
TACTGTGTTGTTGTTTTTGCTGCCAAAGAAGAAGATTACGCAGGAAATTA
GAGCAACACGAGGCACAAATAGAAGAGCTTCGTGAGATGTCTAGAAACAA
TAACAGTAGTTTACGAGGGCGAACATATTCCAACGTTTCTCTTGACAAAG
AAGAGGCTATTCAACGTCATGAAAAGAACAAAGACTTATTAGCTCAGGAC
GGTAGTGAATTTATTGGTTTTACCAATGAAATGTTTCAACCAGACACATC
TCGAACTGAGGTTCGTAGGCCTTCTTTAGGACCTTCGAGATTACAGCCAC
CGCAGAAAAGATCAAATCGTATCCCTTCGTTAAGCGATGCAGCCTTATTC
CCTCACCCGCCTTTTGATTTTATGAACCCTCTACATGAAGACGAACATAA
AGGGAAACCTCGATCATCTTCTCCAGCCAATGCGGTACAAAAGAATGGAA
ATCCACAAGATGCAGGTCCCCCATCGCCCCCGCCACCACCACCACCTCCA
CCACCAGCTCAACCACAAACACCGGTCAAAATTCGTTCCAGCACTCTCAA
CTCGTTAGATCGATTTCAACAGCAACAAAATACATCGCCTATGGATTCAC
TGCTCGGTGAATTCAAAAAGAAAATATCAGTTACTGAGGCTCCAAGCAAT
GACCAAATAAGACCTGTCAGAGCTTCTACGTTCTCAAAGAACGCTCATAA
AGACACACCAAGTAAACCTCGAAGAACAGCGACTGATGTGAATAAATTAC
CGACTGCTAAAAAACCGAATAGAATGCCAGCTAAGAAAGCAATGAATGGA
CATGTTAATGGTGATACAAATGAGAATGAATTTGAAGGATTTTATAATAG
AACTTTTAACCCTGAGATGAACGAATCTGCAAGTCGATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001119XLOC_001119Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002146-proteinTCONS_00002146-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002146-exon-sc0000018-1575043694:569703..570057TCONS_00002146-exon-sc0000018-1575043694:569703..570057Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1575043694:567951..568187TCONS_00002146-exon-sc0000018-1575043694:567951..568187Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1575043694:567367..567551TCONS_00002146-exon-sc0000018-1575043694:567367..567551Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1575043694:566382..566536TCONS_00002146-exon-sc0000018-1575043694:566382..566536Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1575043694:563492..564356TCONS_00002146-exon-sc0000018-1575043694:563492..564356Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1575043694:561257..563114TCONS_00002146-exon-sc0000018-1575043694:561257..563114Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1510915933:569703..570057TCONS_00002146-exon-sc0000018-1510915933:569703..570057Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1510915933:567951..568187TCONS_00002146-exon-sc0000018-1510915933:567951..568187Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1510915933:567367..567551TCONS_00002146-exon-sc0000018-1510915933:567367..567551Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1510915933:566382..566536TCONS_00002146-exon-sc0000018-1510915933:566382..566536Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1510915933:563492..564356TCONS_00002146-exon-sc0000018-1510915933:563492..564356Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1510915933:561257..563114TCONS_00002146-exon-sc0000018-1510915933:561257..563114Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1491911889:569703..570057TCONS_00002146-exon-sc0000018-1491911889:569703..570057Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1491911889:567951..568187TCONS_00002146-exon-sc0000018-1491911889:567951..568187Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1491911889:567367..567551TCONS_00002146-exon-sc0000018-1491911889:567367..567551Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1491911889:566382..566536TCONS_00002146-exon-sc0000018-1491911889:566382..566536Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1491911889:563492..564356TCONS_00002146-exon-sc0000018-1491911889:563492..564356Clytia hemisphaericaexon
TCONS_00002146-exon-sc0000018-1491911889:561257..563114TCONS_00002146-exon-sc0000018-1491911889:561257..563114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:561257..570057 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.211781	0.0810277	0.0564935	0.139968	0.396361	0.0448349	6.20346	8.17586	1.85754	2.1543	0.924636	0.926836	8.9123	7.71041	4.06669	2.67328	1.14332	0.926325	3.34956	2.503	0.0735981	0	6.11177	6.06732
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001774DSL
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007154cell communication
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007154 cell communication
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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