TCONS_00002319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002319
Unique NameTCONS_00002319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002319 ID=TCONS_00002319|Name=TCONS_00002319|organism=Clytia hemisphaerica|type=transcript|length=3671bp
GATAAGAAGGAAGAACCATTTATCAAAAGATGTTTGACCCTGAAACAAAT
ATCTACAGGAAAGTGTGTGATAAGCACTTCAGATAAAATCGAACAGCAAC
GTTTTAATTTGATGGCTCAATGTCCTGACAAAGAAGAGTTGACTTTAAAA
CTTGTCGATGATGGAGTCAAAAAGATTGGGAACTATCGACTGGTGGTGCA
AGATCAACAAACATATTTAGTTTTAACCGGGATACATCTCAGAACTGGAT
ACCAGTATCGCtttgttctatctcaaaattcCAATGCTGTCTTCCATTCA
CCAGATTTTGATCCTAAGGaAACTTCTGGAGAGGTGTTTCCTACTCCATG
CAGCAATTTTGTCATCGCCCACAACACTGGTCATCCATCCTCCTTCCACC
AGTACGACACACCACAAAACAAGCCTAAATTCAAACCACTCAATCTCATT
CAAGGTGCTAAGATATACATACCAACAGCACAAAGGTTTCACGAAATTGC
GTTAGAATACAAACAAAATAACAGTGGATATGATGATTGCTTCCCACCAC
AGTATTTACTCAAACAAGAGACGATCAAAACATTGACCGGCTATTTATCA
GAATCaaagaaaaacctaaaaatGCTTGTTGGCTATAACCATATGCACCA
TTTGAAGACTTTTGGATATACATATAAAGATCTAGAAGGTTTTGATCACC
ACGATGCTCATGATGACACGATCGTGGTTTTGGATGATAACCAAAAGATG
ATTTACTACATAAGAGTGTTGATAGATCAAGCTCCGTCGATAGATGACTA
TTACAAAGAAATAGCCAGATGCGACGACTTTGTCAAGTCACTCTTCATGT
TACATGGAGAAAGACTAACAGACCATTCTATAGGCGTCTGTTCGTTGCTC
GCTTTACCAATGGTCCAGCTCAAAGACTGCGATCGTAGCCTCTTATCCGT
ATCAGAAAACTCGAAAGAATGCTGTATTCTTTTCAAAGAGCATCTTGAAA
GTAAAGACAGTTTGAAGAAAGAGTTGGATCAATATCTTCACCGTATTCAT
ACGATtcgaaaaacatcaaaactctTAGCAGATGGAAATcactttgagaa
aattattgCTGAAAGTATGGCCACAATGTCTTTACAACAAGCATTCTTAC
CAAGACTGACTATGGATACACAGGCACAAATATTATCTCTTTTCTTGAAC
GGCGAACAGTACGAGGCTATCAATCATCCAAATAACAAACGCATCATCAG
GGGTCCCTTTGGAAGTGGTAAATCACTGGTCCTAGAAAAGATAGCGGAGA
AATTATTCGGTTCAATGCAAGACGGCATCATCTATTACATATGTTATGAC
CCCTACAGCTTACTAGATGCCAGAATGGAGGAGATTTTCAAAGAGGTGAC
GGATAAACACCAAGATCCTGGAAATGTTAAGTTTGTCACCTCGACTGTGT
ATCAGTTATTGAAAGATGCTGGTGAAACAGAACCCATCAATGATCTTGTC
AAAGTGATGAAACACTGTCTCCAAGACGCCAATGGTCAACAAGTTCATTT
CCTCTTTGATGAAGTGGATACTTCGTATTTTAACAAAGAAAATGctgatt
ctttgaaaaatttcgtggaTGATGAAACATCTCTGGCAATGTCGACTATC
ATACTCGCGTTGCAATGTACTGAGAAGGAATTAATTGTGCATGATGGTAA
AGGCTTAACTGTTGAACTGAAAAATTACTGCAATGATCGGATCAATTTGA
CTGGGTTGAAATTGTTACGGCCGTTAACAAAGAGTATGAGAATGGTAAAg
aatttatacaaacttaaaGAAGTTGCCGAAGACAAGGCTGGTCAAGAATC
AGTTGTGACAGCTCTGAAGAAAAATGAGACTCCAAGGAAACCATCAACTC
CAGATAACACCATCAATAAGAAAACTAAAGCAGCCAGTCAACCCAAACGC
TCGATTCAGTCCACGACACTAACTACCCCACCAAGAAATTCCACTACATC
TCCCAAAAGGATGGATCCACCTAGCCCATCATTTAATAATATCGTTGCAC
CCGAAGTTGTTAGAACAGCACGTGTGAAACCCAAGCTTGAACCAGTGCAG
ATAAAGCCTGtgaatgaagaagaagaacagAAGAAATTGATTAGtccaga
aaaagaaaagataccAACACAGCCAAGGCCGTCTCCGAAAAAGGATCCAG
TGGTTGAGCTCGACGGTAAAGAGGAGGTGAACAAGATTAATGAAAACAAT
GCGACAATGTCTTCAACTATGAATTTGAGCCCCACAAAGATCTCTGTTGA
TCAGTTAGCAATGTACTCTACCGAACCGTTCACTCAAGATGAAAGTAAAT
CAATGGGAGGAAAATTTGAGCATAATTTCAAATTCCACCACAGCAAAGTT
GGCGTTTCAATACCCGGAAAGAAAGCTTCTATCGTATACTTGAACAAGTC
TTTCGAGATGTCATCTTTAGAAGGGGCGATGGTGCTACAGGAAATTTTGT
CTTCTGAGATTCTTTTCCAACGCGATGTTAAATCCACTATCATTTGCAGT
AATCAGGAAGAGTTGGACGCAGTTATGTTTGTGATCAAAAAGGTTTTCGA
TGAAGAGAGTTACTGTCAATATACTCCTTTGATATCAAAGGACATCCCGA
CACGAGAACAGAAAAGAGATGCTTGGTTAAAATGCAACAGTCCCTCTCAT
AAGATTTTGGTTACCGATTTCCAAAGTTTCAGAGGATGCGAAGCAGAACA
TTGTGTTACTTTCTTAAAAGCAAACGATGCGAATTACATTCCACACATAC
TTGTTGAAGTTTTTGCCAGGGCTATTGCGCACCTTTTAGTCCTTGTCATA
CCTCCACCATCAACGGATAATGGCAACGGTCGTTTCCAGGAAGTACTCAA
AGCTTGGAGAGATGAGGAATTAGCAGACGTTTTTGGATTCAATTCTAAAG
ACACTGAAACTGGTTTTGAGTTGACACTTAAATCTGTGTCTGGAGCTGAC
GGTAGCAAAGTAATTGATAGCAAACAAATCAATATTGAAAGATCATCCCA
AGAAGAATTTGATGTCTTTAAGAAAAGAACCAATAAGGATCATGCAATAA
ACGAATGTTTAAGaTTGTTCAACGAAAATCTCGCGGTGCATGCGCCGGAC
ATCTTAAGCCTTTCACTCAAGAAATTGACAAATGACGCAATGTCTTTGGA
TCAGTTAGATCTTgtggaacaaaaacattttGGTTTTTTGATTGGTCATG
GAGGTGCTGTCATCAAATCGTTGAAAAGAGATCTTGATGTGGATATTGAA
ATTGAACATGTTGAAAGATCCTTTAAGATACGAGGTTCATTCGAAAAGAA
AGTGAATGCTGTTAAAGTGATCAAaaaaaagttggaTACGGAGTTCTGGG
AGACATTGGACATACCATTTTCCCTACACAGAGACATTTTATCACAAAAG
TATCATTGGGCACAGAAATTTCAAGTAAGAGTGGAGAAAACCAAAGATCG
AAGGAAAATACAAATTCAAGGTGAAATCGGAAACGTGCGAAAGGTTTTGG
AAGAAATTAATGAAATCTCAAATAGCAGgtaaagttctacttttttccta
TGGAGTGTTAACCCTCCGTGCATCATGAACGAAAATGTTcgataatagac
gatatcggcttcacatgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00002319-protein

>TCONS_00002319-protein ID=TCONS_00002319-protein|Name=TCONS_00002319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1193bp
DKKEEPFIKRCLTLKQISTGKCVISTSDKIEQQRFNLMAQCPDKEELTLK
LVDDGVKKIGNYRLVVQDQQTYLVLTGIHLRTGYQYRFVLSQNSNAVFHS
PDFDPKETSGEVFPTPCSNFVIAHNTGHPSSFHQYDTPQNKPKFKPLNLI
QGAKIYIPTAQRFHEIALEYKQNNSGYDDCFPPQYLLKQETIKTLTGYLS
ESKKNLKMLVGYNHMHHLKTFGYTYKDLEGFDHHDAHDDTIVVLDDNQKM
IYYIRVLIDQAPSIDDYYKEIARCDDFVKSLFMLHGERLTDHSIGVCSLL
ALPMVQLKDCDRSLLSVSENSKECCILFKEHLESKDSLKKELDQYLHRIH
TIRKTSKLLADGNHFEKIIAESMATMSLQQAFLPRLTMDTQAQILSLFLN
GEQYEAINHPNNKRIIRGPFGSGKSLVLEKIAEKLFGSMQDGIIYYICYD
PYSLLDARMEEIFKEVTDKHQDPGNVKFVTSTVYQLLKDAGETEPINDLV
KVMKHCLQDANGQQVHFLFDEVDTSYFNKENADSLKNFVDDETSLAMSTI
ILALQCTEKELIVHDGKGLTVELKNYCNDRINLTGLKLLRPLTKSMRMVK
NLYKLKEVAEDKAGQESVVTALKKNETPRKPSTPDNTINKKTKAASQPKR
SIQSTTLTTPPRNSTTSPKRMDPPSPSFNNIVAPEVVRTARVKPKLEPVQ
IKPVNEEEEQKKLISPEKEKIPTQPRPSPKKDPVVELDGKEEVNKINENN
ATMSSTMNLSPTKISVDQLAMYSTEPFTQDESKSMGGKFEHNFKFHHSKV
GVSIPGKKASIVYLNKSFEMSSLEGAMVLQEILSSEILFQRDVKSTIICS
NQEELDAVMFVIKKVFDEESYCQYTPLISKDIPTREQKRDAWLKCNSPSH
KILVTDFQSFRGCEAEHCVTFLKANDANYIPHILVEVFARAIAHLLVLVI
PPPSTDNGNGRFQEVLKAWRDEELADVFGFNSKDTETGFELTLKSVSGAD
GSKVIDSKQINIERSSQEEFDVFKKRTNKDHAINECLRLFNENLAVHAPD
ILSLSLKKLTNDAMSLDQLDLVEQKHFGFLIGHGGAVIKSLKRDLDVDIE
IEHVERSFKIRGSFEKKVNAVKVIKKKLDTEFWETLDIPFSLHRDILSQK
YHWAQKFQVRVEKTKDRRKIQIQGEIGNVRKVLEEINEISNSR
Run BLAST on NCBI

transcript from alignment at sc0000019:559028..567868-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002319 ID=TCONS_00002319|Name=TCONS_00002319|organism=Clytia hemisphaerica|type=transcript|length=8841bp|location=Sequence derived from alignment at sc0000019:559028..567868- (Clytia hemisphaerica)
GATAAGAAGGAAGAACCATTTATCAAAAGGTATTTTTCCACAAGAAAATT
GTTTTATTTTGATACAAAATCTCAGGTGTTGTCCTTGACTTGAAAGACAA
GAATTGTTGTTTTTCTTGCAACTTAATTTGCGTTTTTTTGCGTTTTTAGG
CAAAATTGTAAGCCCTGAAAATTGATTTTTGGGGGGTCTTCAAAATCAAA
AAATACCTATACCACGTGATAGAGCTCTTCAAACTGAGCAAAAAAATGTA
TTATCAAAGTCTCAACTTTTTTAGATCAAAAGTTATAGACGATTTTATGG
TCAAAAATTGATTGAAAACAGGGAAAAATTCCCCACAATCTGCATAATTT
ATGCAAAATTATAGCACTTTTTTACCACAAAAACGCCCACAACTCTTGAT
CTAGAAAAGTTGAGACTTTGATATAATACATTTTTTTGCTCAGTTTGAAG
AGCTCTATCACGTGGTATAGGTTTTTTTGATTTTGAAGACCCCCCCCCAA
AAATCATGAATTTTCAGGGCTTACAATTTTGCCTAAAAACGCAAAAAATC
GCAAATTACGTAAAAACTGCGGGTTTTCAAGCATTCAAATTCCGAATCAG
CACCCTGAAATTGACCAAGAAAGATATCAAAAGTTTATTCACCGACATTT
TGAAAAAAAGTGAAACGTTTTGAGGTACCTGGCCATGGTCTAATTATAAA
GTTTTTATCCCTTTTTTTCGGAATTCATACATGAAAAATCAAATTTGATG
AAAAATTAGTGAAAACGAGGAAAATACCAAAAAAATTGATATCGGAATTG
GAAGTATTTTTTACGGAATTTCTGAAATTTTGGCAAAATTTTCGGTATTT
CGGAAATCGCAAACCCCGTACGCCCCCCCCCCCCCCCCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCATATTCAATTTTTTTCT
GGAAAATCCCAATCCAACCATCTCAAAAGATAAATTATGTGACTCATTGT
TTTTTTGTTTTTTTTTATATTCCAAGGGAGGAAAATAGAGGGAACATTCA
AAAATGCCCTCAATATTTCTTGCTGCGGTGACCATTGATCAAAAAAGATT
TGAGAAAATAAAAACTATGCCACTCCTAATTGCAGGTGCGAAATCATATA
AAATAGTTTTAACTAACGTTTTTTTCAAATTTTTATACAGATGTTTGACC
CTGAAACAAATATCTACAGGAAAGTGTGTGATAAGCACTTCAGATAAAAT
CGAACAGCAACGTTTTAATTTGATGGCTCAATGTCCTGACAAAGAAGAGT
TGACTTTAAAACTTGTCGATGATGGAGTCAAAAAGATTGGGAACTATCGA
CTGGTGGTGCAAGATCAACAAACATATTTAGTTTTAACCGGGATACATCT
CAGAACTGGATACCAGTATCGCTTTGTTCTATCTCAAAATTCCAATGCTG
TCTTCCATTCACCAGATTTTGATCCTAAGGGTTTGTATTCATCTCCATTT
CTATATTGTACTCTCAAGTGCAGTCAAGTGTCCAATAAACAGGGGGAGGG
TGGTATATTAGTGGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGG
GGTAGGAGAATCAAAATTACTTAGGTTCCATTTTTTTTTTTGGACACTTT
GCACACCAAAGTGTGCTTGAGAAAACGGAGACCTGTTGTATATTTTTGGA
AAGCTCTCAAAAAATTAAGATTGGAGATATATTAGAGATATATTGCGAGT
AGAGGTGTTTTCAGTACCTAACTCGAGATATTGAGCTTCAAAAAGGGCAA
AAACTGGACAAAACAGCTGTTTCTGGCTTAAAACACTGTTTTTAAGGGTT
AATATCTCGAGTTAGTACAGAAATCACCTATACTTGCAATACAATATATC
TCTAATCTTAATTTTTTTTTGAGAGCTTTCCAAAAATATACAACATTTTC
GTCCAAAACTAAAAAGCTAAATCTAATTTATAACACAGAGACACCTTCTA
AAATCTATTAAGCTGTCCATTTCATGGGCATTTTGATGCAAATTAATGTT
GGTTCAGATCGAAAAATTTAAGTTACATCGGTAGCCAGTTTCTGGCAATT
ATGACCACTCGGAAACAGATTTGCACTTTTAAAAAAGCAGAAAGGTGCCA
TAGATATGAAATTCTACAGCATTGATATTCATTACACTGAACTGGCTTGT
TTATTTGCCATAATTGGCTAAAAATGTAACAAATCAAGCTGTTTTCTACT
ATTTTGTTACAAATTTAGTCAATTTTGGCAGATTGATTGAAATATTTGTA
CAAATTATATTAGCTGCAGAAATGTACTATTGTTTTTACATCAATTTCTC
TGCATGTCAAATATCTAGTTCATATAGAAATAACAAAAAATACTGCATTG
TCATTTAGCTACCCTAAAAGGGGTACTTTTTTTTCTCCTCATAAAGAATG
TTACAGCATTAGCCAAATTTCCTTCTCAATGCATGAAAGATTCAAAGTAA
TGTCACTTTAGAGACTAAAGCTAAGGTATGAATAAATTTATATTTAAAAA
TTCATTATTTACTTTTTAAGAACAAATTTTGGCTATAAAAGAAACCTCCT
TTCTGATCTTTGCACCTTGTTACACTGTTAGCCAATCAATATTTTAATAA
TTTTTTTTCAATGAAAGCATTCTTATTAGTCTAACAAATCCTATATGTTA
CTTGTTTTGCTAGTTTTATGGATGGATAAGCTGATCTAGGAATCGTTAAG
CTAAAATTTTCATTAATTTTTGACCCTATGATTTTTGCCTGAGGCCCCTT
ATCTTTCCAAAAATGTATAACAAGTACTTTGACCAAAACAATCGAGCGAT
TTTACAAAATGCCCTCTACTATAATGAACGGAAGGAATTAATCGCCATGG
GAAGTTTTATCTATAAATTCTCCCAAAATAAGGCTATTTTTGGATGACGT
CATTAATTTCTTTTTCTTCTTTGAAGTTTGTGTCATGATGGAGAACATCC
GTACCAAATTTCACGGCCATAACATAGCTCATCTAGATAAAAAATAATCG
AGGGTGGTTAGATTCTACCCACTTTCCCTACCTGGGGCTACAAAAATCGA
AAAAGTTCGGGTTTGATAGGGTTAATAATGGATTTTAAACGAAAACATAT
TCAATGTGTAACCAGAAATCATTCGGTGAAAAGTTTTTCATTGGCAAAAA
TAATCGTCAAGCATGTTGTACCTCTAAATATCCCAAAAAAGGTAATTATA
GAACCAGCCTATTTAGTGCAAAATAAGGGGCACTTCTTTTGTCAGCTCAA
AAATTGTTAGATAGTAAATAAGAAATCTACATTTTACATATTTTTAGAAA
CTTCTGGAGAGGTGTTTCCTACTCCATGCAGCAATTTTGTCATCGCCCAC
AACACTGGTCATCCATCCTCCTTCCACCAGTACGACACACCACAAAACAA
GCCTAAATTCAAACCACTCAATCTCATTCAAGGTGCTAAGATATACATAC
CAACAGCACAAAGGTTTCACGAAATTGCGTTAGAATACAAACAAAATAAC
AGTGGATATGATGATTGCTTCCCACCACAGTATTTACTCAAACAAGAGAC
GATCAAAACATTGACCGGCTATTTATCAGAATCAAAGAAAAACCTAAAAA
TGCTTGTTGGCTATAACCATATGCACCATTTGAAGACTTTTGGATATACA
TATAAAGATCTAGAAGGTTTTGATCACCACGATGCTCATGATGACACGAT
CGTGGTTTTGGATGATAACCAAAAGATGATTTACTACATAAGAGTGTTGA
TAGATCAAGCTCCGTCGATAGATGACTATTACAAAGAAATAGCCAGATGC
GACGACTTTGTCAAGTCACTCTTCATGTTACATGGAGAAAGACTAACAGA
CCATTCTATAGGCGTCTGTTCGTTGCTCGCTTTACCAATGGTCCAGCTCA
AAGACTGCGATCGTAGCCTCTTATCCGTATCAGAAAACTCGAAAGAATGC
TGTATTCTTTTCAAAGAGCATCTTGAAAGTAAAGACAGTTTGAAGAAAGA
GTTGGATCAATATCTTCACCGTATTCATACGATTCGAAAAACATCAAAAC
TCTTAGCAGATGGAAATCACTTTGAGAAAATTATTGCTGAAAGTATGGCC
ACAATGTCTTTACAACAAGCATTCTTACCAAGACTGACTATGGATACACA
GGCACAAATATTATCTCTTTTCTTGAACGGCGAACAGTACGAGGCTATCA
ATCATCCAAATAACAAACGCATCATCAGGGGTCCCTTTGGAAGTGGTAAA
TCACTGGTCCTAGAAAAGATAGCGGAGAAATTATTCGGTTCAATGCAAGA
CGGCATCATCTATTACATATGTTATGACCCCTACAGCTTACTAGATGCCA
GAATGGAGGAGATTTTCAAAGAGGTGACGGATAAACACCAAGATCCTGGA
AATGTTAAGTTTGTCACCTCGACTGTGTATCAGTTATTGAAAGATGCTGG
TGAAACAGAACCCATCAATGATCTTGTCAAAGTGATGAAACACTGTCTCC
AAGACGCCAATGGTCAACAAGTTCATTTCCTCTTTGATGAAGTGGATACT
TCGTATTTTAACAAAGAAAATGCTGATTCTTTGAAAAATTTCGTGGATGA
TGAAACATCTCTGGCAATGTCGACTATCATACTCGCGTTGCAATGTACTG
AGAAGGAATTAATTGTGCATGATGGTAAAGGCTTAACTGTTGAACTGAAA
AATTACTGCAATGATCGGATCAATTTGACTGGGTTGAAATTGTTACGGCC
GTTAACAAAGAGTATGAGAATGGTAAAGAATTTATACAAACTTAAAGAAG
TTGCCGAAGACAAGGCTGGTCAAGAATCAGTTGTGACAGCTCTGAAGAAA
AATGAGACTCCAAGGAAACCATCAACTCCAGATAACACCATCAATAAGAA
AACTAAAGCAGCCAGTCAACCCAAACGCTCGATTCAGTCCACGACACTAA
CTACCCCACCAAGAAATTCCACTACATCTCCCAAAAGGATGGATCCACCT
AGCCCATCATTTAATAATATCGTTGCACCCGAAGTTGTTAGAACAGCACG
TGTGAAACCCAAGCTTGAACCAGTGCAGATAAAGCCTGTGAATGAAGAAG
AAGAACAGAAGAAATTGATTAGTCCAGAAAAAGAAAAGATACCAACACAG
CCAAGGCCGTCTCCGAAAAAGGATCCAGTGGTTGAGCTCGACGGTAAAGA
GGAGGTGAACAAGATTAATGAAAACAATGCGACAATGTCTTCAACTATGA
ATTTGAGCCCCACAAAGATCTCTGTTGATCAGTTAGCAATGTACTCTACC
GAACCGTTCACTCAAGATGAAAGTAAATCAATGGGAGGAAAATTTGAGCA
TAATTTCAAATTCCACCACAGCAAAGTTGGCGTTTCAATACCCGGAAAGA
AAGCTTCTATCGTATACTTGAACAAGTCTTTCGAGATGTCATCTTTAGAA
GGGGCGATGGTGCTACAGGAAATTTTGTCTTCTGAGATTCTTTTCCAACG
CGATGTTAAATCCACTATCATTTGCAGTAATCAGGAAGAGTTGGACGCAG
TTATGTTTGTGATCAAAAAGGTTTTCGATGAAGAGAGTTACTGTCAATAT
ACTCCTTTGATATCAAAGGACATCCCGACACGAGAACAGAAAAGAGATGC
TTGGTTAAAATGCAACAGTCCCTCTCATAAGATTTTGGTTACCGATTTCC
AAAGTTTCAGAGGATGCGAAGCAGAACATTGTGTTACTTTCTTAAAAGCA
AACGATGCGAATTACATTCCACACATACTTGTTGAAGTTTTTGCCAGGGC
TATTGCGCACCTTTTAGTCCTTGTCATACCTCCACCATCAACGGATAATG
GCAACGGTCGTTTCCAGGAAGTACTCAAAGCTTGGAGAGATGAGGAATTA
GCAGACGTTTTTGGATTCAATTCTAAAGACACTGAAACTGGTTTTGAGTT
GACACTTAAATCTGTGTCTGGAGCTGACGGTAGCAAAGTAATTGATAGCA
AACAAATCAATATTGAAAGATCATCCCAAGAAGAATTTGATGTCTTTAAG
AAAAGAACCAATAAGGATCATGCAATAAACGAATGTTTAAGGTATGAGTA
CTATTTTTATTTACAGCCATTTCTTTACTTATCTCATCAAAGTGAAAATT
CACGGGAGCAAATTTGAGATTGACTGCAAGGATTTTCACTAGTTTTTGTG
AAACATAGGGTGAAACGTGACTGACTTCACACCCATAAACCTAAAAGGTA
CCCCAAAAACCTTTTGCGAATTTGTCGGTAGTTTTGAAAATCACGAAATT
TTCTTCCCGTGAAAGCTTCAAAGTTCTTGAAAAAACGTTCGATAAACGCT
CAATAAAGTTATCCATTTTCACTTCCTTTTTATTTACCCACTTTCAGATT
TTCGAAGCTTAAAAGAGGTCCTATGCGGCTTGCGTGATGGCGTAATTTGG
GCTGTATTTCACCTTTTTTTTTGCGGGATGAACAGAGATTTTCGCGATGT
TTTTATGAGGAGTTCTGCTTTCTGGGGTCGGGGAGGGGTTATAAAATCAT
GAGCTAATTGCTTTGGCTATAAACAGTGACAATTTTCATATATGCTTGAA
TTCTCCCGAGGCCTTTTAAAAGTAATAATTATAACTCAACAAGAGATGTT
ATTTTTCTTTAATTTAGATTGTTCAACGAAAATCTCGCGGTGCATGCGCC
GGACATGTGAGTTATTATGTCTCATTTCAAACAAAACAGAAATTCTCTTT
TCAGTCTCTTCTAGTAGACACTTTGGTTGAGGAAATTGAAATTCTGTGAG
GTCCAAATTTTAATGCAATGAAGTCACTTGAGAGTATTTATTAATGTATA
GAGGGCCACTTTCTTTTTATAGCTTAAGCCTTTCACTCAAGAAATTGACA
AATGACGCAATGTCTTTGGATCAGTTAGATCTTGTGGAACAAAAACATTT
TGGTTTTTTGATTGGTCATGGAGGTGCTGTCATCAAATCGTTGAAAAGAG
ATCTTGATGTGGATATTGAAATTGAACATGTTGAAAGATCCTTTAAGATA
CGAGGTTCATTCGAAAAGAAAGTGAATGCTGTTAAAGTGATCAAGTGGGT
TATTTTATCTTTTCGCTCAGTTATAGCCATTTTTCATGACATGTTATTAA
GAATGTCCTGTCTAGTTTGGTTTTGTCCCGAAGATCAGCCAATTTTTCCA
CTCAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACACAT
ATTTCATCCCGTATCTCATATCAAGATGGTGTCTCCCTATTGTTATAAAG
TGTTGAATAAACGAAAAATTGTTTTTGTTTTCCTCAATCTTGCTCCACAT
CCGTGTCAATTTAATGTAAAAAAGCTTGCAAATTAAAATTGATGAATAAG
CAAACTATATCACTCTTATTTAAAAAACAAAACCTTTAAATGTTGTTGCC
GAAATGACAACGAATACATTCATACCGCACTCAATCTTTTGGTGTACCCA
AATACAAATTCGACATCAAAACGGTCCACCTTTTCTTTTAGAATCCTGTT
GTTACTTGTTTAATGAAGTGATCAAGGGTCTAAACTCCCCGGGGGTACTA
GAGTTGGCAGATGAGGGGTATGTGCGGATGAGACCTCAGAAAACCGACCC
TGAGAGAGACTGATTTTTGCTAAAAAAGTGACCCTTTGAGAGACTTTTTT
GAAAAATTGTCTTCGATTTTTGAAAATTTCCCTACCCTTAGAGAGACTGA
TTTTTGCTAAAAAAGTGACCCTTTGAGAGACTTTTTTGAAAAATTGTCTT
CGATTTTTGAAAATTTCCCTACCCTTAGAGAGACTTTTTTTTTAATTTTT
CACTCTAAATAAAATAAATTCCTAAAAATCGTGAATTTTCCGACCCTCAG
AGAGACTGATTTAATTTTTTCTGATTTTTGCGACCCTTAGAGAGACTTTG
AAAGGTGAAAAAACCGACCCTTACCGTCCGCACATACCCAACACCAATTT
TTGCCTTAAGTACACCCCCTCCGGGGTAAACTCTCAACTTTCTTGTCTTA
AGTTTATTTCGTTTCACAATTATTTTGATGAATTCAGGCATTCGGAGTCT
CCACACTTCGAACCCGCACGGGGAACTCCAATTTGTTTGAGTTATGGAAG
TCTTCGAGACTTACGAGGGTTATGAGAGACTTAAGTGGAACTAGGAAACT
TATATTTAGCTGGAATAGTTAAGGAGACATTCAAGTCACAAAGGTTCGAA
TCATTGAGACCCCACTTCATTTATTCTACATTTCTATGTTTTAGAAAAAA
GTTGGATACGGAGTTCTGGGAGACATTGGACATACCATTTTCCCTACACA
GAGACATTTTATCACAAAAGTATCATTGGGCACAGAAATTTCAAGTAAGA
GTGGAGAAAACCAAAGATCGAAGGAAAATACAAATTCAAGGTGAAATCGG
AAACGTGCGAAAGGTTTTGGAAGAAATTAATGAAATCTCAAATAGCAGGT
AAAGTTCTACTTTTTTCCTATGGAGTGTTAACCCTCCGTGCATCATGAAC
GAAAATGTTCGATAATAGACGATATCGGCTTCACATGAAAA

Coding sequence (CDS) from alignment at sc0000019:559028..567868-

>TCONS_00002319 ID=TCONS_00002319|Name=TCONS_00002319|organism=Clytia hemisphaerica|type=CDS|length=3582bp|location=Sequence derived from alignment at sc0000019:559028..567868- (Clytia hemisphaerica)
GATAAGAAGGAAGAACCATTTATCAAAAGATGTTTGACCCTGAAACAAAT
ATCTACAGGAAAGTGTGTGATAAGCACTTCAGATAAAATCGAACAGCAAC
GTTTTAATTTGATGGCTCAATGTCCTGACAAAGAAGAGTTGACTTTAAAA
CTTGTCGATGATGGAGTCAAAAAGATTGGGAACTATCGACTGGTGGTGCA
AGATCAACAAACATATTTAGTTTTAACCGGGATACATCTCAGAACTGGAT
ACCAGTATCGCTTTGTTCTATCTCAAAATTCCAATGCTGTCTTCCATTCA
CCAGATTTTGATCCTAAGGAAACTTCTGGAGAGGTGTTTCCTACTCCATG
CAGCAATTTTGTCATCGCCCACAACACTGGTCATCCATCCTCCTTCCACC
AGTACGACACACCACAAAACAAGCCTAAATTCAAACCACTCAATCTCATT
CAAGGTGCTAAGATATACATACCAACAGCACAAAGGTTTCACGAAATTGC
GTTAGAATACAAACAAAATAACAGTGGATATGATGATTGCTTCCCACCAC
AGTATTTACTCAAACAAGAGACGATCAAAACATTGACCGGCTATTTATCA
GAATCAAAGAAAAACCTAAAAATGCTTGTTGGCTATAACCATATGCACCA
TTTGAAGACTTTTGGATATACATATAAAGATCTAGAAGGTTTTGATCACC
ACGATGCTCATGATGACACGATCGTGGTTTTGGATGATAACCAAAAGATG
ATTTACTACATAAGAGTGTTGATAGATCAAGCTCCGTCGATAGATGACTA
TTACAAAGAAATAGCCAGATGCGACGACTTTGTCAAGTCACTCTTCATGT
TACATGGAGAAAGACTAACAGACCATTCTATAGGCGTCTGTTCGTTGCTC
GCTTTACCAATGGTCCAGCTCAAAGACTGCGATCGTAGCCTCTTATCCGT
ATCAGAAAACTCGAAAGAATGCTGTATTCTTTTCAAAGAGCATCTTGAAA
GTAAAGACAGTTTGAAGAAAGAGTTGGATCAATATCTTCACCGTATTCAT
ACGATTCGAAAAACATCAAAACTCTTAGCAGATGGAAATCACTTTGAGAA
AATTATTGCTGAAAGTATGGCCACAATGTCTTTACAACAAGCATTCTTAC
CAAGACTGACTATGGATACACAGGCACAAATATTATCTCTTTTCTTGAAC
GGCGAACAGTACGAGGCTATCAATCATCCAAATAACAAACGCATCATCAG
GGGTCCCTTTGGAAGTGGTAAATCACTGGTCCTAGAAAAGATAGCGGAGA
AATTATTCGGTTCAATGCAAGACGGCATCATCTATTACATATGTTATGAC
CCCTACAGCTTACTAGATGCCAGAATGGAGGAGATTTTCAAAGAGGTGAC
GGATAAACACCAAGATCCTGGAAATGTTAAGTTTGTCACCTCGACTGTGT
ATCAGTTATTGAAAGATGCTGGTGAAACAGAACCCATCAATGATCTTGTC
AAAGTGATGAAACACTGTCTCCAAGACGCCAATGGTCAACAAGTTCATTT
CCTCTTTGATGAAGTGGATACTTCGTATTTTAACAAAGAAAATGCTGATT
CTTTGAAAAATTTCGTGGATGATGAAACATCTCTGGCAATGTCGACTATC
ATACTCGCGTTGCAATGTACTGAGAAGGAATTAATTGTGCATGATGGTAA
AGGCTTAACTGTTGAACTGAAAAATTACTGCAATGATCGGATCAATTTGA
CTGGGTTGAAATTGTTACGGCCGTTAACAAAGAGTATGAGAATGGTAAAG
AATTTATACAAACTTAAAGAAGTTGCCGAAGACAAGGCTGGTCAAGAATC
AGTTGTGACAGCTCTGAAGAAAAATGAGACTCCAAGGAAACCATCAACTC
CAGATAACACCATCAATAAGAAAACTAAAGCAGCCAGTCAACCCAAACGC
TCGATTCAGTCCACGACACTAACTACCCCACCAAGAAATTCCACTACATC
TCCCAAAAGGATGGATCCACCTAGCCCATCATTTAATAATATCGTTGCAC
CCGAAGTTGTTAGAACAGCACGTGTGAAACCCAAGCTTGAACCAGTGCAG
ATAAAGCCTGTGAATGAAGAAGAAGAACAGAAGAAATTGATTAGTCCAGA
AAAAGAAAAGATACCAACACAGCCAAGGCCGTCTCCGAAAAAGGATCCAG
TGGTTGAGCTCGACGGTAAAGAGGAGGTGAACAAGATTAATGAAAACAAT
GCGACAATGTCTTCAACTATGAATTTGAGCCCCACAAAGATCTCTGTTGA
TCAGTTAGCAATGTACTCTACCGAACCGTTCACTCAAGATGAAAGTAAAT
CAATGGGAGGAAAATTTGAGCATAATTTCAAATTCCACCACAGCAAAGTT
GGCGTTTCAATACCCGGAAAGAAAGCTTCTATCGTATACTTGAACAAGTC
TTTCGAGATGTCATCTTTAGAAGGGGCGATGGTGCTACAGGAAATTTTGT
CTTCTGAGATTCTTTTCCAACGCGATGTTAAATCCACTATCATTTGCAGT
AATCAGGAAGAGTTGGACGCAGTTATGTTTGTGATCAAAAAGGTTTTCGA
TGAAGAGAGTTACTGTCAATATACTCCTTTGATATCAAAGGACATCCCGA
CACGAGAACAGAAAAGAGATGCTTGGTTAAAATGCAACAGTCCCTCTCAT
AAGATTTTGGTTACCGATTTCCAAAGTTTCAGAGGATGCGAAGCAGAACA
TTGTGTTACTTTCTTAAAAGCAAACGATGCGAATTACATTCCACACATAC
TTGTTGAAGTTTTTGCCAGGGCTATTGCGCACCTTTTAGTCCTTGTCATA
CCTCCACCATCAACGGATAATGGCAACGGTCGTTTCCAGGAAGTACTCAA
AGCTTGGAGAGATGAGGAATTAGCAGACGTTTTTGGATTCAATTCTAAAG
ACACTGAAACTGGTTTTGAGTTGACACTTAAATCTGTGTCTGGAGCTGAC
GGTAGCAAAGTAATTGATAGCAAACAAATCAATATTGAAAGATCATCCCA
AGAAGAATTTGATGTCTTTAAGAAAAGAACCAATAAGGATCATGCAATAA
ACGAATGTTTAAGATTGTTCAACGAAAATCTCGCGGTGCATGCGCCGGAC
ATCTTAAGCCTTTCACTCAAGAAATTGACAAATGACGCAATGTCTTTGGA
TCAGTTAGATCTTGTGGAACAAAAACATTTTGGTTTTTTGATTGGTCATG
GAGGTGCTGTCATCAAATCGTTGAAAAGAGATCTTGATGTGGATATTGAA
ATTGAACATGTTGAAAGATCCTTTAAGATACGAGGTTCATTCGAAAAGAA
AGTGAATGCTGTTAAAGTGATCAAAAAAAAGTTGGATACGGAGTTCTGGG
AGACATTGGACATACCATTTTCCCTACACAGAGACATTTTATCACAAAAG
TATCATTGGGCACAGAAATTTCAAGTAAGAGTGGAGAAAACCAAAGATCG
AAGGAAAATACAAATTCAAGGTGAAATCGGAAACGTGCGAAAGGTTTTGG
AAGAAATTAATGAAATCTCAAATAGCAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001225XLOC_001225Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002319-proteinTCONS_00002319-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002319-exon-sc0000019-1575043694:567840..567868TCONS_00002319-exon-sc0000019-1575043694:567840..567868Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1575043694:566189..566478TCONS_00002319-exon-sc0000019-1575043694:566189..566478Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1575043694:561528..564321TCONS_00002319-exon-sc0000019-1575043694:561528..564321Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1575043694:560913..560951TCONS_00002319-exon-sc0000019-1575043694:560913..560951Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1575043694:560525..560746TCONS_00002319-exon-sc0000019-1575043694:560525..560746Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1575043694:559028..559324TCONS_00002319-exon-sc0000019-1575043694:559028..559324Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1510915933:567840..567868TCONS_00002319-exon-sc0000019-1510915933:567840..567868Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1510915933:566189..566478TCONS_00002319-exon-sc0000019-1510915933:566189..566478Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1510915933:561528..564321TCONS_00002319-exon-sc0000019-1510915933:561528..564321Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1510915933:560913..560951TCONS_00002319-exon-sc0000019-1510915933:560913..560951Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1510915933:560525..560746TCONS_00002319-exon-sc0000019-1510915933:560525..560746Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1510915933:559028..559324TCONS_00002319-exon-sc0000019-1510915933:559028..559324Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1491911889:567840..567868TCONS_00002319-exon-sc0000019-1491911889:567840..567868Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1491911889:566189..566478TCONS_00002319-exon-sc0000019-1491911889:566189..566478Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1491911889:561528..564321TCONS_00002319-exon-sc0000019-1491911889:561528..564321Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1491911889:560913..560951TCONS_00002319-exon-sc0000019-1491911889:560913..560951Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1491911889:560525..560746TCONS_00002319-exon-sc0000019-1491911889:560525..560746Clytia hemisphaericaexon
TCONS_00002319-exon-sc0000019-1491911889:559028..559324TCONS_00002319-exon-sc0000019-1491911889:559028..559324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:559028..567868 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03227	0.974815	0.426346	0.414698	6.22071	4.60625	4.54667	4.60591	1.9545	3.26584	2.23959	1.82243	2.28035	1.85289	3.64202	5.31903	2.60556	2.76652	3.65507	3.91788	1.13399	1.04262	2.15494	3.36884	4.9417	4.38746	1.68926	1.12622	1.39165	1.21344
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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