TCONS_00002428 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002428
Unique Name	TCONS_00002428
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1009

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000020:233897..238233+
coding sequence from alignment at sc0000020:233897..238233+

transcript sequence

>TCONS_00002428 ID=TCONS_00002428|Name=TCONS_00002428|organism=Clytia hemisphaerica|type=transcript|length=1009bp
GTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTT
CGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAA
TTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCA
CTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGA
AACAGCCACAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGG
TTGGGAAAATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTC
AAATCACAACCACACACCATCGCATTGGAATATATGTTAAATGGGACATT
GAACCTATACTTGAAGAAACATGACATGAAGTTGACCAATTTACAACTGT
TGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATATCTCAACGAACTT
GGATTCATTCACAGGGATATAGCAGCGAGAAATGTTGTTTTGGCTGACAA
TGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAACTTGATGGAA
AAGGTTGTTTCATGGCGAAGGATGGTAAAATTGCGATCATATGGGCAGCA
CCAGAATCAGCACATCAGAAAATATTCACCACAGCTTCAGATGTGTGGTC
TTATGGTATTTTACTTTGGGAAATCATGTCTTATGGTGAACGACCTTACT
GGAACATGGAATCTCCTGCTGACGTTTTGGAAGCAATAGATCAAGGTTAT
CGATTACCTCCACTAAAGAATTGTCCAAGAGTCGCTTATGACATGATGTT
AGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAAATCC
TTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGATGAA
GCAACACCAGATGGCTATTCATCCTTgTACAGCAACCACAGTAACAAGAA
TGGAGCTGATTATGCAGAAATTTCGGATTATGCTGATCTTAAATCAGTCA
ATGATTGGC

Run BLAST on NCBI

protein sequence of TCONS_00002428-protein

>TCONS_00002428-protein ID=TCONS_00002428-protein|Name=TCONS_00002428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
VEMKETSTYGKVLENPFENDENSGPEINPNSLTIVQMLSNGKSLDISKGA
LLKNGEMKTVVIKTLKETATESDRIDFLQEASLVGKMNHTNIIKYEGIIL
KSQPHTIALEYMLNGTLNLYLKKHDMKLTNLQLLGMARGVASGMKYLNEL
GFIHRDIAARNVVLADNGECKISNFGMCRELDGKGCFMAKDGKIAIIWAA
PESAHQKIFTTASDVWSYGILLWEIMSYGERPYWNMESPADVLEAIDQGY
RLPPLKNCPRVAYDMMLECWEIEHTKRPTINEILNRIDKWIDNPEELLDE
ATPDGYSSLYSNHSNKNGADYAEISDYADLKSVNDW

Run BLAST on NCBI

transcript from alignment at sc0000020:233897..238233+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002428 ID=TCONS_00002428|Name=TCONS_00002428|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000020:233897..238233+ (Clytia hemisphaerica)
GTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTT
CGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAA
TTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCA
CTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGT
AAGCAgcaaaacctttttaaaaaacaaaaccgaTTATTCGGCTTCAGAGT
TAGTTCAGCGTTGGAAGAAAATTTGTCGCAGGGGCTGGAATCAGCaccct
ctcaccaacttttcctcgttctcctacgcagctacTATTTTAGCGAACAT
GCGTGCTCTCtaacatgattaattaacaggcGAGTTTGTTAGTCTATTAT
AATCTAAGACCTTATGTACAAGTTTCGTTTTTTACCTATTGACCTCAGAT
ATGTCTCAATTTCTTTCATAAAATCATATTTTGTCCTCAGGAAACAGCCA
CAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGGTTGGGAAA
ATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTCAAATCACA
ACCACACACCATCGCATTGGAATATATGTTAAATGGGACATTGAACCTAT
ACTTGAAGGTGAGGAACCTCAACGAATTCTTGACTGTCCAATTATGATTG
TGCTATATAAAGGAACTTACAATTTTTAAGTGTTCATTAGTAAAGTAAAA
AGTGCTTCCAAGTGGCTCTTGGTACGACATTGGCAAAGGGCTTGAAATGT
TTATTAAAAGATCTTCCTCGCTTCACAGAAACATGACATGAAGTTGACCA
ATTTACAACTGTTGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATAT
CTCAACGAACTTGGATTCATTCACAGGGTAAAGTATTTGTAATGGCCTGT
TGTATgttcaaacaatttttacatGAATTCAAGACCATAACTCATGACCA
TTTAAATTAAAGTGGTGTAAAAGAAGATTTTCTCTCATGTCAAACTGTTC
AATAACTTTATTTAGTGGCAGTCAAAATTTATGCAAGAATACACGAGGGT
GTGGTCGAGTGGTAGCACACTCACTTCATGCCTAGCCTATAAGGATTGCG
AGCTCGAGCCATGTCAGCCACGTAGCAAGATCATGGTTATCAATCAAAGT
GACGGTCCGGGAAAGGGAACCCTTAGGATAGATGTGAGAAACcgttaaaa
gataaaaacacTGTCTCCTATTTAATCTCCTATTTGAAGCAATTTTAGTA
TAGCTCTTGAAATATCTATCAATAGGATATAGCAGCGAGAAATGTTGTTT
TGGCTGACAATGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAA
CTTGATGGAAAAGGTTGTTTCATGGCGAAGGTAAGATCTTCAAAATTCTG
CATGATTTGGTTTAGCACGAATTAACAGGTAAGTCTGCGATCGCAGTTCT
CCTTCGATAGCTTTCTAGCCAAAGGAAGGTGAGAGCGCCATTTTTTCTCC
ATGAGTTGCTCCACTTaaccttgatccttctcttaaatgaacatcaagca
gagagCCAAGTCTCATTTTGTATAAAGTACGAAATCTTTGGTAAACCTGG
CCAAGGATTgaaccgtagctggatgctctatcTTTCCGCTATGGGCTGTA
TAAACTTGCGTATCTTAAAGAAGTTTAAATGATTGATACGTCTTAATACA
ATTCAGTTGATCAATCAGTCAAGATGATAAAAATTATAGAGAATGTTTTA
ACAGGATGGTAAAATTGCGATCATATGGGCAGCACCAGAATCAGCACATC
AGAAAATATTCACCACAGCTTCAGATGTGTGGTCTTATGGTATTTTACTT
TGGGAAATCATGTCTTATGGTGAACGACCTTACTGGAACATGGAATCTCC
TGCTGACGTATGTAGTTCATATTTTTGTCTCTACTCATGCTTTTGCATTG
TACCTGAGAGTGTAAAGGCCTGTGTAGAAAAGATGCCATTTCTAAAGCTC
AAGTTTCTCTGAAACGAAAGCGAATACAAATATTTTGCTAAAAAGTTAAC
TAAAAAATTAGTCTCTTTTATCTCTACTATGGTTTCAAATCTAAATATTG
TACGACAAAAACAGTATTTTCTTCCAGGTTATATGGTTATGTAAGGATAG
ATGaaaatctcgtacccagagcaaTTTGCACTACTTTTTACTAATGGACG
TTTCATGAGCACTAGAATCATGACAAAGCGAACTAAGGAACTTGCTTCGA
GTTTGAATAAAAGATTCATTGGTATTGTGTTTTGTTTTAGGTTTTGGAAG
CAATAGATCAAGGTTATCGATTACCTCCACTAAAGGTTTGATACTAAACA
ATACTTCTCtttggcatgtcttaaaatcaCCATAACCGTGAGATATTTAA
ATCATCTACTTTTGCTTTATAGTATTTTATCAATGAATGGActactcggg
taagttatggcatgtctcaaaaactgaatatcaccataatttttagatcg
cattagccgacagaaaacgatcaaacaaatgactgaacacgAAGGGTACT
acgatgtagtttctaacctgatgtgtaacctaattgttttttcgctggtT
TTCGCGAAATTcctcaaaaactgattatgacgtcataatcgatgacgtca
ttaaaactaaaactttCACCAAACATGTATCCTACTAAAGTCAatcattt
gaaaaattctttttttcgaaattttgataaCGCCAGCAAATAATAGGATT
TTTTGTCTtttactaatttctgctgacgtcatcaaaatttttaaatttcc
tttttcaaatGATGATTGACTATGGTAAGAtacatttttggtaaaaattt
gaagacaattggataaaccattcttgagaaattcaatttttagttgtttt
tgcggtttttcgcaaaaatctggcaaaaaacatcaggttagaaacttcat
GATAAGGTCTTcgtgttcagtcatttgtttggtcattttctgtcggctaa
tgcgatctaaaaattatggtaatattcagtttttgagacatgccataact
tacccgagtagTCCATTCATTGATAAAATACTATAAAGCAAAAGTAGATG
ATTTAAACATCTCACAGTTTTAACCTCGCATCTGTATGAAATAGTAATTT
TGATACAGttttattgatttgtttttcaCCTAAATTGTGAAACTGAACTC
TCCAATATCTTTATATTCAAAGAATTGTCCAAGAGTCGCTTATGACATGA
TGTTAGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAA
ATCCTTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGA
TGAAGCAACACCAGATGGCTATTCATCCTTGTAAGTTTTCTGATGAATAT
TTGTACAAGGGATGGCCGTTGAGCAGTTCTTTTTAAGATCTcatgaaata
gctttaaaaaataattcttaatGCGCCATTTCCATGTAGAAACCATGTAC
TGTATCTAAACCATTTACTTAGATCGGGTAACTtgtatcagtggaggcta
acatgaaGAAAGCAATACAGAGCTGTTAATGAAGGCCAAACACtaccttt
ccaaaagaaaagtttaacaactgaacccaaaactagcaaatcaatccaaa
gaaaaaatatatacaacaaAATCAATAGTAAAAATAATCGATGGAAATAG
TTGAAAACAAAATGCTCGAATACTACCACTATCCAAGCCTAGTGTAAAAA
CTGCCACTTAGTGCACATCCATCGACCCAATGCCACACACCTAAATAacc
atgcatagccctcaaatgaatgacctgtctgatccttgaaatacaaagtt
aaatcaaaacaaaaatggtagagtagagctgcgagcgaagctgtgtagtt
catttgttttgaaattttgctgctttgattggtcagtcatttgagggcaa
tgcatgttagcctccactgatgcaagttacccaatctcaagGTAAGTAGT
TTCTATTCGATATCAAAAAGAATAAACACTCAAAATgaactttaattttt
caataattcaagaaaaattaatACTACGGCTCTAGTAATTCAATCTTTTG
GTCAACAAACAACTATCTTCCATCCTTTTAGCTTGAACCCAGATGAGAAA
ATTATAGTATGAAGTAAAAGGTAGGAAAAtctattctttttttgttttga
acaggTACAGCAACCACAGTAACAAGAATGGAGCTGATTATGCAGAAATT
TCGGATTATGCTGATCTTAAATCAGTCAATGATTGGC

Coding sequence (CDS) from alignment at sc0000020:233897..238233+

>TCONS_00002428 ID=TCONS_00002428|Name=TCONS_00002428|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000020:233897..238233+ (Clytia hemisphaerica)
GTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTT
CGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAA
TTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCA
CTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGA
AACAGCCACAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGG
TTGGGAAAATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTC
AAATCACAACCACACACCATCGCATTGGAATATATGTTAAATGGGACATT
GAACCTATACTTGAAGAAACATGACATGAAGTTGACCAATTTACAACTGT
TGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATATCTCAACGAACTT
GGATTCATTCACAGGGATATAGCAGCGAGAAATGTTGTTTTGGCTGACAA
TGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAACTTGATGGAA
AAGGTTGTTTCATGGCGAAGGATGGTAAAATTGCGATCATATGGGCAGCA
CCAGAATCAGCACATCAGAAAATATTCACCACAGCTTCAGATGTGTGGTC
TTATGGTATTTTACTTTGGGAAATCATGTCTTATGGTGAACGACCTTACT
GGAACATGGAATCTCCTGCTGACGTTTTGGAAGCAATAGATCAAGGTTAT
CGATTACCTCCACTAAAGAATTGTCCAAGAGTCGCTTATGACATGATGTT
AGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAAATCC
TTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGATGAA
GCAACACCAGATGGCTATTCATCCTTgTACAGCAACCACAGTAACAAGAA
TGGAGCTGATTATGCAGAAATTTCGGATTATGCTGATCTTAAATCAGTCA
ATGATTGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001306	XLOC_001306	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002428-protein	TCONS_00002428-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000020	supercontig	sc0000020:233897..238233 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0886944	0	0.100424	0.0491247	0.418633	0.472584	1.19732	0.693901	0.784781	0.648052	0.673945	0.502095	0.884817	0.735113	1.86345	2.4862	1.86431	2.21796	1.74426	1.77591	4.28774	2.94888	0.915257	1.43306	0.714204	0.594916	9.60779	4.47788	4.23308	2.95881

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001245	Ser-Thr/Tyr_kinase_cat_dom
IPR000719	Prot_kinase_dom
IPR020635	Tyr_kinase_cat_dom
IPR008266	Tyr_kinase_AS
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding
GO:0004713	protein tyrosine kinase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004713	protein tyrosine kinase activity

Blast

[Close]

BLAST of TCONS_00002428 vs. Swiss-Prot (Human)
Match: EPHA3 (Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 8.355e-87
Identity = 133/287 (46.34%), Postives = 199/287 (69.34%), Query Frame = 1

Query:   40 ENPFENDENSGPEINPNSLTIVQMLSNGKSLDISKGAL-LKNGEMKTVVIKTLKETATESDRIDFLQEASLVGKMNHTNIIKYEGIILKSQPHTIALEYMLNGTLNLYLKKHDMKLTNLQLLGMARGVASGMKYLNELGFIHRDIAARNVVLADNGECKISNFGMCREL--DGKGCFMAKDGKIAIIWAAPESAHQKIFTTASDVWSYGILLWEIMSYGERPYWNMESPADVLEAIDQGYRLPPLKNCPRVAYDMMLECWEIEHTKRPTINEILNRIDKWIDNPEEL 891
            E+P +       E++  +++I +++  G+  ++  G L L + +  +V IKTLK   TE  R DFL EAS++G+ +H NII+ EG++ KS+P  I  EYM NG+L+ +L+KHD + T +QL+GM RG+ASGMKYL+++G++HRD+AARN+++  N  CK+S+FG+ R L  D +  +  + GKI I W +PE+   + FT+ASDVWSYGI+LWE+MSYGERPYW M S  DV++A+D+GYRLPP  +CP   Y +ML+CW+ +   RP   +I++ +DK I NP  L
Sbjct:  603 EDPTQAVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM-SNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSL 888

The following BLAST results are available for this feature:

BLAST of TCONS_00002428 vs. Swiss-Prot (Human)

BLAST of TCONS_00002428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EPHA3	8.355e-87	46.34	Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 ...	[more]

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TCONS_00002428 (transcript) - C. hemisphaerica