TCONS_00002490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002490
Unique NameTCONS_00002490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002490 ID=TCONS_00002490|Name=TCONS_00002490|organism=Clytia hemisphaerica|type=transcript|length=3574bp
tttagGTTCCTGGTCTAGACTTGGGACATCTAAAGTTTGCTGGAAAAGAT
ATACTTATGACAAATGCAACGAAGAGTTATCCAGTGATATTGACTGCAGT
CAATACCAATCTTTATCTGGGTTTCGTTCAGTGGAAGGTGTTTGTAACAA
TCTTCAACACCCAACATGGGGAGCAGCTCATACTAAGCTCAGACGGGTAG
TTGATCCCGAGTATGCATCAGACGGCAAGTTTGACACGCCACGTGGTTTC
CCTAACACGAACCCAGTCCTTCCACCACCAAACGCAGTTACGCAACAACT
GTTTGACGTTGAAAACCAAAACAGTGGAAGTATTAAGAAAATTACAACTT
TGTTCATGACTTTTGGGCAGTTTCTGGATCATGATTTTACAGAGACACCT
CATCAATATTGCAAACAAAAaTGCGATGTAAGCAACTCATGGCAATATCC
ATGTTTCCCATTGCTGTTCGACACCACAACCAATAGCTGTTCAGCCAATG
GTCGATCAACAGCTGTATGTAGCAACAGAGCTTATCTATCACCAAGACAA
CAAATGAATGCACTCTCTGCTTTCGTTGATGGATCACAGATCTATGATAA
TCGGAAGGCTCATTTTGAATTGTTGAGGGACAGTACAGaCGGTTTAATGA
AGATCACAAAATCTGATGGTTTATTACCTGTTGAGTTTGCTCAAGGTGAG
AATGGATGCTTCACAGTTGGAGGTTGTTCGTTAGCCGGTGATTTTAGAGT
CGATGAAAACATTGCTCTTCACACCATGCATACATTATGGATTCGGAACC
ACAACAATATTGCTCGCCAGTTGAAATCACTAAACCCAACATGGAGCCAT
GATAAGCTTTTCAATAATGCTCGAAAAATCAATAGTGCTTTATGGCAACA
CATCACTTATAATGAATATCTTCCAGTCCTGGCAAGCATACCAGCTTACC
AAGGTTATAAAACTGACGTGGATCCATCAATCACCAATGTCTTTGCATCA
GCTGCTTTCAGATATGGTCATTCGCTAGTACCAAATCAATTTGAGCAGTT
GAATGTTGGTTTCAATAGGGAGAATGATCCAGTTCCTTTACAGGATGCTT
TCTTCAATCGTCAATTGATCAATGACCGAGGAATTGAGCAAACCATGAGA
GGATTGGTTGGCAATATGTCAAACAACGTCGATGACAAGTTCTCCCAAGC
TATTGCCAGAAAGCTGTTCCTTCCTATTGGAGCTGTTGGTTATTTAGATT
TGACTGCATTGAATATTCAACGTGGTCGAGACCATGGATTACCAGGATAT
AATACTTACAGGAAATACTGTGGCCTGCCAGTCGCTGAAAATTGGGCGGA
TATCGATTCTATCATGGTACCAGGCGCTGCTGCCAAGTTTGAAAAAGTCT
ACAATCATCCTGATGATATAGATATTTTTGCTGGAGGAATATCTGAGAAG
CACGTCACAAACTTGGAGATCGGTCCAACGTTTAATTGCTTGATTGGCCA
ACAATTCAAAGCAACTAGAGATGGTGATCGCTTTTATTATGAGAACCCTG
GTGTCTTCACAGCACAACAGCTAATAGCAATCAAAAAGGTTACATTGTCT
ACAATCCTCTGTTTGAATCTGAATTCGCCAGGAAAACCAGCAGGTCTAGT
ATCAATTCAGCCAGATGCATTCCACACACCAGATGCCAATCAGAACACCA
GAAAAACATGCAGCGGAAATGCCATCCCCAAACTTGATCTTACAGCTTGG
TCAGAAGAGCAAGTTGTAGTACCAATACAACCAATACCTGTTAAAGACCA
AGAATCTAACCAAGATAACCATATTGGTAATGTCTTCACAGAAAATCATG
ATAACGATGTTGGTGGATCAATCAATTCGCATGAATCCGAAGCTTTGTCA
TCCATCAATGACGCGTTAACAAATCTTCAGGACGTTCTCATTAAAATGAA
ACAACAATTCCACAATGATGACCTGCTGAACAACCTTGATGAGGACATTG
TTGAAGAGACCCTTCATCAATCCAAGAAGAATATTCACCAAAGATTAAAG
GATTACATTCACTCAAAGAAGAACGTTGAAAGTGACATTGAAGGTGAAAG
TGTTCATGTCAAGGACGATAACCAGTAGAACTCCTTTATATAGTCACACT
CATATAGTCACGAGGATAATAATACTCTACAGTGCACGCACTAGTATTTG
GCttctaccttaagtggattaattttcgcgtggacaaaatttcgcgaatg
gaagattgaaaattttcgcgtggactaaatttcgcgatttggcctgtttt
ttacctaatttctttcattttcctaggggttttgacaaaaattgcaattc
taaaaatttcgcgtggacaaaatttcgcgaatggaagattgaaaattttc
gcgtagactaaatttcgcgatttggcctgttttttacctaatttctttca
ttttcctaggggttttgacaaaaattgcaattctaaaaatttcgcgtgga
caaaatttcgcgaaaatggccaaaatacgcgaaaatcgcgaaaattaatc
cacgcgaaaattaatccacttaaggtatgtcGAACAGTCACTAATGAAgt
gtcaaaaattattttatattttgtcgATTGTAATCAATATAgccctttta
aaattttatatcgTGATATATCGTGATCACTTTGCAGTTAGGTGCTTATT
TTTTCTACTGCTGAGACCGGCATATCTGGGGCCAATACATTAGTTCGTGT
ATAGTTTAATGAATAGTGTTTTTTTCAGGCtcgtttttcttcattttgct
TTAAAATACAAGGAATATAATAATATATAATTCATGTTCATTGATAAagt
aaagtttttctttattttccttgaaaagTAACAAGATTTTACTGTAGTGA
TTACGAAATTTTTCCGAAATACGCCTCATACAGGCGAGTCCTGGGATAAT
CTACTCATCGATCAAAATAGTGATTCGACATGTGGACGAGGTTGTGAAGT
TTCTTGTTCATTTTCCATGAAAACAACTCATGTTCAATTTGTCTGAGAAT
TATTTACTTACATgtgcttttgaaaataaaatgtagcgttttctttattt
tccttgaaaaatacaaagaatacaCTTAATCTTCTTTGATTCGTTAATGT
TCTTccttttccttgaaaaatacaaagaatacaCTTAATCTTCTTTGATT
CGTTAAGTAAGATTGTTCTTccttttccttgaaaaatacaagattACACT
TCATGTGCTTTTGAGAATAAATggtaaagtttttcttttttttcttgaaa
attgaaatagaaTAATTCATGCTTTACTACATTTTCCTTGAAATATACAA
AGGAAACACTCCATGGGCTTTTAAAATAGATTGTAAACGtctttctttat
tttccttgaaaaattaCATAGAATAAATAAACTTCATGTTCAGtcagaaa
aaaaagtaaattgttacctcattttccttgaaaaatacaaataaaacaCT
TCATGTATTTCATTGGTTAATAAGGTTaaacttcattttccttgaaaaat
acaaagaacGTTCTGTCAGATAAA
Run BLAST on NCBI

protein sequence of TCONS_00002490-protein

>TCONS_00002490-protein ID=TCONS_00002490-protein|Name=TCONS_00002490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=708bp
LGSWSRLGTSKVCWKRYTYDKCNEELSSDIDCSQYQSLSGFRSVEGVCNN
LQHPTWGAAHTKLRRVVDPEYASDGKFDTPRGFPNTNPVLPPPNAVTQQL
FDVENQNSGSIKKITTLFMTFGQFLDHDFTETPHQYCKQKCDVSNSWQYP
CFPLLFDTTTNSCSANGRSTAVCSNRAYLSPRQQMNALSAFVDGSQIYDN
RKAHFELLRDSTDGLMKITKSDGLLPVEFAQGENGCFTVGGCSLAGDFRV
DENIALHTMHTLWIRNHNNIARQLKSLNPTWSHDKLFNNARKINSALWQH
ITYNEYLPVLASIPAYQGYKTDVDPSITNVFASAAFRYGHSLVPNQFEQL
NVGFNRENDPVPLQDAFFNRQLINDRGIEQTMRGLVGNMSNNVDDKFSQA
IARKLFLPIGAVGYLDLTALNIQRGRDHGLPGYNTYRKYCGLPVAENWAD
IDSIMVPGAAAKFEKVYNHPDDIDIFAGGISEKHVTNLEIGPTFNCLIGQ
QFKATRDGDRFYYENPGVFTAQQLIAIKKVTLSTILCLNLNSPGKPAGLV
SIQPDAFHTPDANQNTRKTCSGNAIPKLDLTAWSEEQVVVPIQPIPVKDQ
ESNQDNHIGNVFTENHDNDVGGSINSHESEALSSINDALTNLQDVLIKMK
QQFHNDDLLNNLDEDIVEETLHQSKKNIHQRLKDYIHSKKNVESDIEGES
VHVKDDNQ
Run BLAST on NCBI

transcript from alignment at sc0000020:202770..208430-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002490 ID=TCONS_00002490|Name=TCONS_00002490|organism=Clytia hemisphaerica|type=transcript|length=5661bp|location=Sequence derived from alignment at sc0000020:202770..208430- (Clytia hemisphaerica)
TTTAGGTTCCTGGTCTAGACTTGGGACATCTAAAGTTTGCTGGAAAAGTA
TGCAGATTTTTCCAAATTTATCTCTTCTGGATTATCGGAACAGATGTTTT
ATATTCCTTCCTAGAATTTTTAGAAGTGCTTGGAATATAGCTGGCTCCTG
GATTTTACTCCGAAATACCCTCTCCTTCAAAAAAAGAGCAGATATTTTGA
AAAATTCCTCTGCTGGCTGCTCCTGATCTCAATTAGTTGAAGGGTTAGTG
GCTTTTTAAAATTCAGTCTCTGACCACAAATTTTCCTTACAGGATATACT
TATGACAAATGCAACGAAGAGTTATCCAGTGATATTGACTGCAGTCAATA
CCAATCTTTATCTGGGTTTCGTTCAGTGGAAGGTGTTTGTAACAATCTTC
AACACCCAACATGGGGAGCAGCTCATACTAAGCTCAGACGGGTAGTTGGT
AAGTACTTTAAATCTTTAGTGTGTGGGGGGGGACTCCTCTAAGTGCTCTA
TTGATTAAGCTATCTAAACGTTTATTTACAAAACAATTTGACGTCAAAAG
ATGGAGGCATTGTTGGCTTTGTCGAATTTGAAACCATTTTACCTATGGCA
ATTGAATGAAATTTGAATGGCCATCCACGTGTGTCACCGGCTTTGTTGGT
CATCGTTTGTTGGTCATCCATATGTTTTACACCTGGGGTCTTACAGTCCA
CGTGAATACACGCTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCGCAA
TGTTTCTTAAAAACTCGGCCTTTTGAGCCTGAAATGTTTCTTTTACATGT
TTCTAAACTTTTTGACATAATAAACCTATTTTTCATGCAATAAGAAAAGA
AAAGAAAACAATTATTTTGATTGGACGGTTCTTGAAAAAAAAAAAGAATT
AAAAAATGCTATTTTCTCATTCTGAGCCTCAGCATGTTTCTTAGATATTT
CTTAGTTTTTAGGCATTCTAAGCCTCATGTTTCTTAAAAGTATGTTTCTT
AAAAAAAAAAACATGTAGTTAGATTAAGTAGGCCTTGATGGTTCCTCAGT
TCCTCTAAGGTTTTCTAAAAATGTGTCCCTTGTATTCCCCTTGTATTGCA
CCTGAGTTTCCTCATTTCAGATCCCGAGTATGCATCAGACGGCAAGTTTG
ACACGCCACGTGGTTTCCCTAACACGAACCCAGTCCTTCCACCACCAAAC
GCAGTTACGCAACAACTGTTTGACGTTGAAAACCAAAACAGTGGAAGTAT
TAAGAAAATTACAACTTTGTTCATGACTTTTGGGCAGTTTCTGGATCATG
ATTTTACAGAGACACCTCATCAATATTGCAAACAAAAGTAAGCATCATTA
AAATACACAAAAATCTCTTTCATCGTGAATATTACGAGTGTGGACAGGTA
GACCTTCATCATGGGGGGCTATGGCGGGTATGTGCCGCTCGACCTTTGGT
GATGGAACCCTTGGAAGGACTAAAACTGATAAAAGAAAAACCCGAATTTT
CATAAATTATATTACCCTTATTGGTACATTTTGGACTTTTTTGCTTGGAA
TTTTGGCTTTTGAGGGTCAAGAAATGTGATTTTAGCTGATTTTACAACCG
TTAAGGGGATTGGAATTAAATTTTGTGATTTTAAGACCCTTAGTGGGATT
TTGAAGATGACAAAAAGGCACCCTTAAGGGCGGCACATATCCGTACCCTC
CTTTTGCCTAAGGACCTTCATACCCTAGTAATCTACTCTTCTCTAAAAAC
CTTGCATTACCTCTGCCTATGTTACTGCTAGTCAACACTTAATTCTAGAG
TGTATTATACGAGGGGAACCTCGACAAAAGTCTTTTTATTTGTTTCAATT
CATCTTTTCGCATATATAATTCTTATGACATAAACTGTGTAATATGAAAA
ATTTCGTACTCAGAACGAGAAAATGTGGAATTATGCGACTGCCTGGGAAA
TCGAAAAGTAGTAAAAGTACACATATACTGATAAAGTCTGATTTTTTTTC
TCTCAGATGCGATGTAAGCAACTCATGGCAATATCCATGTTTCCCATTGC
TGTTCGACACCACAACCAATAGCTGTTCAGCCAATGGTCGATCAACAGCT
GTATGTAGCAACAGAGCTTATCTATCACCAAGACAACAAATGAATGCACT
CTCTGCTTTCGTTGATGGATCACAGATCTATGATAATCGGAAGGCTCATT
TTGAATTGTTGAGGGACAGTACAGGTAATTAATAACTATCCATTTGTCCA
AGTCTTCACTTTTAAATAGCAGATTTGAGGGAAGGGCACAAAACACAACA
CACAAAACACGCTTTTTATAAGATTTTATACAAAAAAAAAGATGAGGGGT
CTTAAATTTAGTGAACACATATGATATGACATTATAGATGTTAAAGATTA
TTTTTGAAAAAGACTAATTTGGTTTTATGATTTAGCAATCCCATGTTTGC
ATACACGCTTTTCTTTTTATAAGAATAGTGTACTTTGGCTGAGGGTGAGC
ATTATTCTTATTGTTCTATTGTTCTAAACAATAGGCCTATTTTCTTAACT
TTGAAATCTCACCCTGATATTCTTATAGAAGTTATTCTTATAAAAAAAAG
AAGCGTGCATTCGCGTGTTTTTATTCGTGTATCCCCGAGCAAACCCTTTC
CGGGGCTATCGAAAATGGAAAGTCAGTATCTCAATCTGAAAGTGAAATTT
ATGTTTCATTTTTCATTTTTTACAGACGGTTTAATGAAGATCACAAAATC
TGATGGTTTATTACCTGTTGAGTTTGCTCAAGGTGAGAATGGATGCTTCA
CAGTTGGAGGTTGTTCGTTAGCCGGTGATTTTAGAGTCGATGAAAACATT
GCTCTTCACACCATGCATACATTATGGATTCGGAACCACAACAATATTGC
TCGCCAGTTGAAATCACTAAACCCAACATGGAGCCATGATAAGCTTTTCA
ATAATGCTCGAAAAATCAATAGTGCTTTATGGCAACACATCACTTATAAT
GAATATCTTCCAGTCCTGGCAAGCATACCAGCTTACCAAGGTTATAAAAC
TGACGTGGATCCATCAATCACCAATGTCTTTGCATCAGCTGCTTTCAGAT
ATGGTCATTCGCTAGTACCAAATCAATTTGAGCAGTTGAATGTTGGTTTC
AATAGGGAGAATGATCCAGTTCCTTTACAGGATGCTTTCTTCAATCGTCA
ATTGATCAATGACCGAGGAATTGAGCAAACCATGAGAGGATTGGTTGGCA
ATATGTCAAACAACGTCGATGACAAGTTCTCCCAAGCTATTGCCAGAAAG
CTGTTCCTTCCTATTGGAGCTGTTGGTTATTTAGATTTGACTGCATTGAA
TATTCAACGTGGTCGAGACCATGGATTACCAGGATATAATACTTACAGGA
AATACTGTGGCCTGCCAGTCGCTGAAAATTGGGCGGATATCGATTCTATC
ATGGTACCAGGCGCTGCTGCCAAGTTTGAAAAAGTCTACAATCATCCTGA
TGATATAGATATTTTTGCTGGAGGAATATCTGAGAAGCACGTCACAAACT
TGGAGATCGGTCCAACGTTTAATTGCTTGATTGGCCAACAATTCAAAGCA
ACTAGAGATGGTGATCGCTTTTATTATGAGAACCCTGGTGTCTTCACAGC
ACAACAGCTAATAGCAATCAAAAAGGTTACATTGTCTACAATCCTCTGTT
TGAATCTGAATTCGCCAGGAAAACCAGCAGGTCTAGTATCAATTCAGCCA
GATGCATTCCACACACCAGATGCCAATCAGAACACCAGAAAAACATGCAG
CGGAAATGCCATCCCCAAACTTGATCTTACAGCTTGGTCAGAAGAGCAAG
TTGTAGTACCAATACAACCAATACCTGTTAAAGACCAAGAATCTAACCAA
GATAACCATATTGGTAATGTCTTCACAGAAAATCATGATAACGATGTTGG
TGGATCAATCAATTCGCATGAATCCGAAGCTTTGTCATCCATCAATGACG
CGTTAACAAATCTTCAGGACGTTCTCATTAAAATGAAACAACAATTCCAC
AATGATGACCTGCTGAACAACCTTGATGAGGACATTGTTGAAGAGACCCT
TCATCAATCCAAGAAGAATATTCACCAAAGATTAAAGGATTACATTCACT
CAAAGAAGAACGTTGAAAGTGACATTGAAGGTGAAAGTGTTCATGTCAAG
GACGATAACCAGTAGAACTCCTTTATATAGTCACACTCATATAGTCACGA
GGATAATAATACTCTACAGTGCACGCACTAGTATTTGGCTTCTACCTTAA
GTGGATTAATTTTCGCGTGGACAAAATTTCGCGAATGGAAGATTGAAAAT
TTTCGCGTGGACTAAATTTCGCGATTTGGCCTGTTTTTTACCTAATTTCT
TTCATTTTCCTAGGGGTTTTGACAAAAATTGCAATTCTAAAAATTTCGCG
TGGACAAAATTTCGCGAATGGAAGATTGAAAATTTTCGCGTAGACTAAAT
TTCGCGATTTGGCCTGTTTTTTACCTAATTTCTTTCATTTTCCTAGGGGT
TTTGACAAAAATTGCAATTCTAAAAATTTCGCGTGGACAAAATTTCGCGA
AAATGGCCAAAATACGCGAAAATCGCGAAAATTAATCCACGCGAAAATTA
ATCCACTTAAGGTATGTCGAACAGTCACTAATGAAGTGTCAAAAATTATT
TTATATTTTGTCGATTGTAATCAATATAGCCCTTTTAAAATTTTATATCG
TGATATATCGTGATCACTTTGCAGTTAGGTGCTTATTTTTTCTACTGCTG
AGACCGGCATATCTGGGGCCAATACATTAGTTCGTGTATAGTTTAATGAA
TAGTGTTTTTTTCAGGCTCGTTTTTCTTCATTTTGCTTTAAAATACAAGG
AATATAATAATATATAATTCATGTTCATTGATAAAGTAAAGTTTTTCTTT
ATTTTCCTTGAAAAGTAACAAGATTTTACTGTAGTGATTACGAAATTTTT
CCGAAATACGCCTCATACAGGCGAGTCCTGGGATAATCTACTCATCGATC
AAAATAGTGATTCGACATGTGGACGAGGTTGTGAAGTTTCTTGTTCATTT
TCCATGAAAACAACTCATGTTCAATTTGTCTGAGAATTATTTACTTACAT
GTGCTTTTGAAAATAAAATGTAGCGTTTTCTTTATTTTCCTTGAAAAATA
CAAAGAATACACTTAATCTTCTTTGATTCGTTAATGTTCTTCCTTTTCCT
TGAAAAATACAAAGAATACACTTAATCTTCTTTGATTCGTTAAGTAAGAT
TGTTCTTCCTTTTCCTTGAAAAATACAAGATTACACTTCATGTGCTTTTG
AGAATAAATGGTAAAGTTTTTCTTTTTTTTCTTGAAAATTGAAATAGAAT
AATTCATGCTTTACTACATTTTCCTTGAAATATACAAAGGAAACACTCCA
TGGGCTTTTAAAATAGATTGTAAACGTCTTTCTTTATTTTCCTTGAAAAA
TTACATAGAATAAATAAACTTCATGTTCAGTCAGAAAAAAAAGTAAATTG
TTACCTCATTTTCCTTGAAAAATACAAATAAAACACTTCATGTATTTCAT
TGGTTAATAAGGTTAAACTTCATTTTCCTTGAAAAATACAAAGAACGTTC
TGTCAGATAAA

Coding sequence (CDS) from alignment at sc0000020:202770..208430-

>TCONS_00002490 ID=TCONS_00002490|Name=TCONS_00002490|organism=Clytia hemisphaerica|type=CDS|length=2127bp|location=Sequence derived from alignment at sc0000020:202770..208430- (Clytia hemisphaerica)
TTAGGTTCCTGGTCTAGACTTGGGACATCTAAAGTTTGCTGGAAAAGATA
TACTTATGACAAATGCAACGAAGAGTTATCCAGTGATATTGACTGCAGTC
AATACCAATCTTTATCTGGGTTTCGTTCAGTGGAAGGTGTTTGTAACAAT
CTTCAACACCCAACATGGGGAGCAGCTCATACTAAGCTCAGACGGGTAGT
TGATCCCGAGTATGCATCAGACGGCAAGTTTGACACGCCACGTGGTTTCC
CTAACACGAACCCAGTCCTTCCACCACCAAACGCAGTTACGCAACAACTG
TTTGACGTTGAAAACCAAAACAGTGGAAGTATTAAGAAAATTACAACTTT
GTTCATGACTTTTGGGCAGTTTCTGGATCATGATTTTACAGAGACACCTC
ATCAATATTGCAAACAAAAATGCGATGTAAGCAACTCATGGCAATATCCA
TGTTTCCCATTGCTGTTCGACACCACAACCAATAGCTGTTCAGCCAATGG
TCGATCAACAGCTGTATGTAGCAACAGAGCTTATCTATCACCAAGACAAC
AAATGAATGCACTCTCTGCTTTCGTTGATGGATCACAGATCTATGATAAT
CGGAAGGCTCATTTTGAATTGTTGAGGGACAGTACAGACGGTTTAATGAA
GATCACAAAATCTGATGGTTTATTACCTGTTGAGTTTGCTCAAGGTGAGA
ATGGATGCTTCACAGTTGGAGGTTGTTCGTTAGCCGGTGATTTTAGAGTC
GATGAAAACATTGCTCTTCACACCATGCATACATTATGGATTCGGAACCA
CAACAATATTGCTCGCCAGTTGAAATCACTAAACCCAACATGGAGCCATG
ATAAGCTTTTCAATAATGCTCGAAAAATCAATAGTGCTTTATGGCAACAC
ATCACTTATAATGAATATCTTCCAGTCCTGGCAAGCATACCAGCTTACCA
AGGTTATAAAACTGACGTGGATCCATCAATCACCAATGTCTTTGCATCAG
CTGCTTTCAGATATGGTCATTCGCTAGTACCAAATCAATTTGAGCAGTTG
AATGTTGGTTTCAATAGGGAGAATGATCCAGTTCCTTTACAGGATGCTTT
CTTCAATCGTCAATTGATCAATGACCGAGGAATTGAGCAAACCATGAGAG
GATTGGTTGGCAATATGTCAAACAACGTCGATGACAAGTTCTCCCAAGCT
ATTGCCAGAAAGCTGTTCCTTCCTATTGGAGCTGTTGGTTATTTAGATTT
GACTGCATTGAATATTCAACGTGGTCGAGACCATGGATTACCAGGATATA
ATACTTACAGGAAATACTGTGGCCTGCCAGTCGCTGAAAATTGGGCGGAT
ATCGATTCTATCATGGTACCAGGCGCTGCTGCCAAGTTTGAAAAAGTCTA
CAATCATCCTGATGATATAGATATTTTTGCTGGAGGAATATCTGAGAAGC
ACGTCACAAACTTGGAGATCGGTCCAACGTTTAATTGCTTGATTGGCCAA
CAATTCAAAGCAACTAGAGATGGTGATCGCTTTTATTATGAGAACCCTGG
TGTCTTCACAGCACAACAGCTAATAGCAATCAAAAAGGTTACATTGTCTA
CAATCCTCTGTTTGAATCTGAATTCGCCAGGAAAACCAGCAGGTCTAGTA
TCAATTCAGCCAGATGCATTCCACACACCAGATGCCAATCAGAACACCAG
AAAAACATGCAGCGGAAATGCCATCCCCAAACTTGATCTTACAGCTTGGT
CAGAAGAGCAAGTTGTAGTACCAATACAACCAATACCTGTTAAAGACCAA
GAATCTAACCAAGATAACCATATTGGTAATGTCTTCACAGAAAATCATGA
TAACGATGTTGGTGGATCAATCAATTCGCATGAATCCGAAGCTTTGTCAT
CCATCAATGACGCGTTAACAAATCTTCAGGACGTTCTCATTAAAATGAAA
CAACAATTCCACAATGATGACCTGCTGAACAACCTTGATGAGGACATTGT
TGAAGAGACCCTTCATCAATCCAAGAAGAATATTCACCAAAGATTAAAGG
ATTACATTCACTCAAAGAAGAACGTTGAAAGTGACATTGAAGGTGAAAGT
GTTCATGTCAAGGACGATAACCAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001332XLOC_001332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002490-exon-sc0000020-1575043694:208384..208430TCONS_00002490-exon-sc0000020-1575043694:208384..208430Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1575043694:207983..208138TCONS_00002490-exon-sc0000020-1575043694:207983..208138Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1575043694:207094..207310TCONS_00002490-exon-sc0000020-1575043694:207094..207310Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1575043694:206207..206424TCONS_00002490-exon-sc0000020-1575043694:206207..206424Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1575043694:202770..205705TCONS_00002490-exon-sc0000020-1575043694:202770..205705Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1510915933:208384..208430TCONS_00002490-exon-sc0000020-1510915933:208384..208430Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1510915933:207983..208138TCONS_00002490-exon-sc0000020-1510915933:207983..208138Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1510915933:207094..207310TCONS_00002490-exon-sc0000020-1510915933:207094..207310Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1510915933:206207..206424TCONS_00002490-exon-sc0000020-1510915933:206207..206424Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1510915933:202770..205705TCONS_00002490-exon-sc0000020-1510915933:202770..205705Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1491911889:208384..208430TCONS_00002490-exon-sc0000020-1491911889:208384..208430Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1491911889:207983..208138TCONS_00002490-exon-sc0000020-1491911889:207983..208138Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1491911889:207094..207310TCONS_00002490-exon-sc0000020-1491911889:207094..207310Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1491911889:206207..206424TCONS_00002490-exon-sc0000020-1491911889:206207..206424Clytia hemisphaericaexon
TCONS_00002490-exon-sc0000020-1491911889:202770..205705TCONS_00002490-exon-sc0000020-1491911889:202770..205705Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002490-proteinTCONS_00002490-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:202770..208430 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.814542	0.40471	1.47236	7.16418	73.418	45.898	52.0978	46.0541	0.000104723	0.0800305	0.834089	0.0170408	0.0128885	0.000795506	0.758576	0.417163	0.0171192	0.00523107	1.31519	0.921476	0.716797	0.584227	0.0132488	0.365886	10.0448	16.6614	0.481855	2.34948	0.000216765	0.14195
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019791Haem_peroxidase_animal
IPR010255Haem_peroxidase
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0004601peroxidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0004601 peroxidase activity
Blast
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BLAST of TCONS_00002490 vs. Swiss-Prot (Human)
Match: PERL (Lactoperoxidase OS=Homo sapiens GN=LPO PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.800e-91
Identity = 208/591 (35.19%), Postives = 306/591 (51.78%), Query Frame = 2 
Query:  116 SGFRSVEGVCNNLQHPTWGAAHTKLRRVVDPEYA---------SDGKFDTPRGFPNTNPVLPPPNAVTQQLFDVENQNSGSIKKITTLFMTFGQFLDHDFTETP------HQYCKQKCDVSNSWQYPCFPLLFDT------TTNSCSANGRSTAVCSNRAYLS-PRQQMNALSAFVDGSQIYDNRKAHFELLRD--STDGLMKITK--SDGLLPVEF--AQGENGCFTVGG-----CSLAGDFRVDENIALHTMHTLWIRNHNNIARQLKSLNPTWSHDKLFNNARKINSALWQHITYNEYLPVLAS------IPAYQGYKTDVDPSITNVFASAAFRYGHSLVPNQFEQLNVGFNR--ENDPVPLQDAFFNR-QLINDRGIEQTMRGLVGNMSNNV--DDKFSQAIARKLFLPIGAVGYLDLTALNIQRGRDHGLPGYNTYRKYCGLPVAENWADIDSIMVPGA-AAKFEKVYNHPDDIDIFAGGISEKHVTNLEIGPTFNCLIGQQFKATRDGDRFYYENPGVFTAQQLIAIKKVTLSTILCLNLNSPGKPAGLVSIQPDAFHTPDANQNTRKTCSGNAIPKLDLTAWS 1753
            S +R++ G CNN + P  GAA+  L R +  EY          + GK  T  GFP     LP    V+ ++    N+     +  + LFM +GQ +DHD    P       +Y K +CD        CFP++F        T   C    R+  VC    Y S  R+Q+NAL++F+D S +Y +  +    LR+  S  GLM + +  SD  LP     ++  + C  +       C LAGD R  E+I L T HTL++R HN +AR+LK LNP W  +KL+  ARKI  A  Q IT+ +YLP+L        IP YQGY   VDP I+NVF + AFR+GH  VP+   +L+  +        +PL   FFN  +++ D GI+  +RGL+   S  +  +   +  +  KLF P   +   DL A+N QR RDHG PGYN++R +C L   +   ++++++     A K   +Y  PD+IDI+ G I+E  V    +GP   CL+G+QF+  RDGDRF++ENPGVFT +Q  +++K++ S ++C N         +  +  D F    AN         +AI KLDL+ W+
Sbjct:  136 SPYRTITGDCNNRRKPALGAANRALARWLPAEYEDGLSLPFGWTPGK--TRNGFP-----LPLAREVSNKIVGYLNEEGVLDQNRSLLFMQWGQIVDHDLDFAPDTELGSSEYSKAQCDEYCIQGDNCFPIMFPPNDPKAGTQGKCMPFFRAGFVCPTPPYKSLAREQINALTSFLDASFVYSSEPSLASRLRNLSSPLGLMAVNQEVSDHGLPYLPYDSKKPSPCEFINTTARVPCFLAGDSRASEHILLATSHTLFLREHNRLARELKRLNPQWDGEKLYQEARKILGAFVQIITFRDYLPILLGDHMQKWIPPYQGYSESVDPRISNVF-TFAFRFGHLEVPSSMFRLDENYQPWGPEPELPLHTLFFNTWRMVKDGGIDPLVRGLLAKKSKLMKQNKMMTGELRNKLFQPTHRIHGFDLAAINTQRCRDHGQPGYNSWRAFCDLSQPQTLEELNTVLKSKMLAKKLLGLYGTPDNIDIWIGAIAEPLVERGRVGPLLACLLGKQFQQIRDGDRFWWENPGVFTNEQKDSLQKMSFSRLVCDNTR-------ITKVPRDPFW---ANSYPYDFVDCSAIDKLDLSPWA 708
The following BLAST results are available for this feature:
BLAST of TCONS_00002490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PERL1.800e-9135.19Lactoperoxidase OS=Homo sapiens GN=LPO PE=1 SV=2[more]
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