TCONS_00002495 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002495
Unique Name	TCONS_00002495
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1574

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000020:266819..271884-
coding sequence from alignment at sc0000020:266819..271884-

transcript sequence

>TCONS_00002495 ID=TCONS_00002495|Name=TCONS_00002495|organism=Clytia hemisphaerica|type=transcript|length=1574bp
AGATGGGAGACCACCAATCTTTTTTGAGGCAAAACAAACAATAACATACG
ataacaaatcaaacaaaaaatatataagatATTTGTTTGATTCAAAAATG
GCTTGTGGAGCTATCACCGGTTTTGAAGTATATTATTATAAATGCCCATC
TAGAACCAGTTCAATGACATCATTTGGACATATCAATGCTCCAACTTATT
CCGAAAATGTAAAAGAGTATCAAGGGGAATGTGTTGAAAACGCTGTAAAA
GTTGGTGATGAACTATTAACAATGAAGTGTTTATGGAATGGAACGATTGC
GTCAATGACTGGACAATGCATTTGTTTACAGGGATACCAGAGAGAAGGAA
ATGAGTGTATAAAATGTGACAGTCAACATTTCAAGCCAACACAAGGAAAT
GAACAGTGCACACAATGTGGCTTAAACTCACTTTCTAGCATTGATCGAAC
TGTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCAGTGAAGTCAACA
ATCCTTTAGCTGTCTGTTACAgAATCCCAGACACTCTCCATTCATTCAGC
ATTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTGGTCTCATCCATC
ACaagtcaacaaaacaaatatttaCATTGTGGATTGCAAAGGTTGTCCCT
CTGGTGTTTTCCCTAAAACCACAACCAACAAATTTATTACCATCAATGGT
CTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTTCTCAAGTGAAGT
TTCAAGGATGATcggtgaaaatcaaacttcgGAATTCAAATCGTTCAAAA
CATTACCAGGAGTCCCTGGCATGGTCCAAAATCTGCGACAAAAGACACTA
GACAATGGAAAGTTCGAATACATTGAACTGAGTTGGGACGAGCCTTTTGC
TAAAGGAAACGATGACATTACATATTTAGTAAAATATGATGGCTCTACAA
GGTCTACAACCTCAACCCGTTACATCATACATGAGATCACTGAAATTGAC
AATTTTAAAGTAGCGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGG
TCAATCAGCTATTTTGCATATAAAATTTCGTCCTGTCACCGAATCGAAAA
ATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTACTTTTA
TTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAGAAAATT
CTCAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTG
ATGGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGA
TTAACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAA
AAATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAA
GTCAAAATTTAAGCTAAGTTTTTTTGTAATAAGTGAACATGTTTGTTTGT
GGTATCGACCTGGCAAGAAGAGTTTTCGGTAGAGTGGTTTGGATTTAGTG
AAAATACAATGATGTTGAAGATTGATACTATCAAGTCACTTTATCTGCTT
TTGGTGACAGATATGATAGAGGAC

Run BLAST on NCBI

protein sequence of TCONS_00002495-protein

>TCONS_00002495-protein ID=TCONS_00002495-protein|Name=TCONS_00002495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
DGRPPIFFEAKQTITYDNKSNKKYIRYLFDSKMACGAITGFEVYYYKCPS
RTSSMTSFGHINAPTYSENVKEYQGECVENAVKVGDELLTMKCLWNGTIA
SMTGQCICLQGYQREGNECIKCDSQHFKPTQGNEQCTQCGLNSLSSIDRT
VCNCLYKNKREVSEVNNPLAVCYRIPDTLHSFSIANITSSSLEITWSHPS
QVNKTNIYIVDCKGCPSGVFPKTTTNKFITINGLGAFADYEISVTFSSEV
SRMIGENQTSEFKSFKTLPGVPGMVQNLRQKTLDNGKFEYIELSWDEPFA
KGNDDITYLVKYDGSTRSTTSTRYIIHEITEIDNFKVAAQVSVNGQVLVG
QSAILHIKFRPVTESKNLSVGVIVTIVGLALLLFLVVGGVLVFYYRKRKF
SRKAVDENNGDYMIPIDGEPTYESINYAKMTVRLTDNNPYYGVSESTPNK
NEDQELAYLDLTNID

Run BLAST on NCBI

transcript from alignment at sc0000020:266819..271884-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002495 ID=TCONS_00002495|Name=TCONS_00002495|organism=Clytia hemisphaerica|type=transcript|length=5066bp|location=Sequence derived from alignment at sc0000020:266819..271884- (Clytia hemisphaerica)
AGATGGGAGACCACCAATCTTTTTTGAGGCAAAACAAACAATAACATACG
ATAACAAATCAAACAAAAAATATATAAGATATTTGTTTGATTCAAAAATG
GCTTGTGGAGCTATCACCGGTTTTGAAGTATATTATTATAAATGCCCATC
TAGAACCAGTTCAATGACATCATTTGGACATATCAATGCTCCAACTTATT
CCGAAAATGTAAAAGAGTATCAAGGGGAATGTGTTGAAAACGCTGTAAAA
GTTGGTGATGAACTATTAACAATGAAGTGTTTATGGAATGGAACGATTGC
GTCAATGACTGGACAATGCATTTGTTTACAGGGATACCAGAGAGAAGGAA
ATGAGTGTATAAGTAAGTATTTTAAAATTTACTTTCGATATTGAAAGTAT
CTTCTACCATGACTCATAAATAATCATGCTTCTACTACTATTGTCCCTCA
TAGTTTCTTCTCTCTGGGCTCCTCTCTCTCTCTCTTTTTTCCCAATGCTT
TTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCTGTGTT
CGTTCGTTCGTCTGTTACCAACTTTTCATAGAATTGAATCATAAGAATCT
TTTGATTTTTGGTCAGTACAAAGGAGCAAAATGGTAATGGCCAAAATGTG
ACGGAGCCCGAATTTCGATAAAAAAATGTTTTTGGGCAAATTTGGGCCAA
AAAACAGCTAAAAATTGTTTTTTTTTGGACTTTGTGAAAAATTGGATCAT
TAATTTTTTCTAATTTTTTGCATGATAGTAGGGTACCATTATAGGTAAAA
GATGGCTTAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTTAAAAAACGC
ATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAATTTTCTTAG
TCAAATTACTCAATTTTTTTATGAGACAGAAGTTTTTTTCGCTCATGAGG
GTTTATTTTTGAAGATTATGTGTGTTTAGACATGAAATTTTGGTTGCTTG
GCGTGTTTTTATAGAAAAACTAGCCAAATTCGATATTATTTTATAAGCAC
ATTATCAATTACTTAGGTATTAGCTTTTCTTGAGATTGGCTCTTTCATTC
TTTATGATTTTTTGCACAAAGATGCATATTTTACTATAAACCCTCGAAAA
ATTGGATCATTGTTTTTTTCTGATTTTTTGCATTAAAGTAGGTAAAAGAT
GGCTCAAGCAGAACTTTTCAGCTCAAAAAACGCATCTTCATCTATAGGAA
TCACTATTATTAAGCATACATCAATGTTTTTAGCCAAATTACTCAATTTT
TTGATGTTTTTTTTGCTCACAAAGTCTTAAATATGAAAGAATATTTCAAG
AGCAAGAAATTTTGGTTTCTAAACGTTTTTTTTTTAAAGAATCAAACGAC
TAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAACGGT
CATGCTCACGTGTGTTAAATGCAAAACCAGGTAGGTCCATAAAAGTATAA
CTTGTTTCATAAGAAGCAGTACATTTGGGCCATTTTTCGTAATATTCAGA
CATTATTTTCTGAAATCTTAGAAATGATTATTATCAAAATAGTTGGTTCT
TAGGTTAAGGTCAAATTTTTCTTGTCCCTCTCTCCTCTCCTCCTCCTGTA
TTTTTAAAATTATGAATATACACACTCTCTTAGAATGTGACAGTCAACAT
TTCAAGCCAACACAAGGAAATGAACAGTGCACACAATGTGGCTTAAACTC
ACTTTCTAGCATTGATCGAACTGTATGTAATTGTCTGTATAAAAACAAAC
GTGAAGTCAGTGAAGTCAACAATCCTTTAGCTGTCTGTTACAGTAAGTTA
CTTGATATACATTACCCATGTCACGGTCATTGTGTGTTTATTAAAATAAT
TTCCATGTCGGCCGTTTCTTGTAGCGATTTAAGTGTCATTTATATTATAT
ATTTTGAAGGAATCCCAGACACTCTCCATTCATTCAGCATTGCAAACATA
ACCAGTAGCTCTCTAGAAATCACTTGGTCTCATCCATCACAAGTCAACAA
AACAAATATTTACATTGTGGATTGCAAAGGTTGTCCCTCTGGTGTTTTCC
CTAAAACCACAACCAACAAATTTATTACCATCAATGGTCTTGGTGCGTTT
GCTGATTATGAGATCAGTGTGACTTTCTCAAGTGAAGTTTCAAGGATGAT
CGGTGAAAATCAAACTTCGGAATTCAAATCGTTCAAAACATTACCAGGAG
GTAAGCTCTTATTATTGCAAAAATAATAAAGAAAATTAAAATTAAAATTC
TGTCTTAAAAGTTTGTGAACACTTTACTTGTTAATAATTTCTCAGCACTC
ATTTTTATGCTGAGTTAAAATTCAAAAACACCGTTGGAAAGATATTCTTG
AGATTAAAAAAAAAAGAAAATTGAATTGACAAAACGATGATTAGAATATT
TGAACATGATTTCACAATCTTTGTTTACTCTCGGGTACTTAATAGCCGTT
TGGAATAAGCGGGGGGGGGGGGGGTTGGAAAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTTGGAAAAAATCTCAAAATTTAATAAGTGGGGGGTTGGAAT
AAAAATTTCCTGGGTGGAAAATTTTCGAAAGGAGGCTAATACAGCAGAAT
TAGGGCAAAAGAGTAGGTAATTATTTTGGCTATCTTTGGTCATTATTTGC
CGTTTTTTCCCTTAAATGTACGATTAACATTGCTTGACGGAGACTCATAC
TGGAGATTTTTTTGTTTTAATCTTTAGTCCCTGGCATGGTCCAAAATCTG
CGACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAACTGAGTTG
GGACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTAGTAAAAT
ATGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCATACATGAG
ATCACTGAAATTGACAATTTTAAAGTAGGTTTCCCGGGAACGTTTTCTCT
AGTCTGGAGATCCATACTCTCTATTCAAACGTTTACACCACATAAGCAAA
AATCCCATCCGAAGCTTCTCATTGAGAGTATGGTATTTTTGACCCAGTTT
GAATTTGCTTACATTTGGTTTGAATTTCTTGCCAAAAAAGCTGTTGATAA
GATTAGCCAATCAGGCAGTTGCGCACTTCAAATCAAAACAATAATATGAC
GAGATTTCAACAATTGTTTAACAGTTAATAGAATTACGCGACCAGATTTG
GCATCAACAAAAATACCCGGCTGCTCTGTTATTTCTATATCACTATTCGT
TTTAACTAAATTTTATACTTCAAAATCACAGGAACAGAGTAGACGGGCTA
CGTTTTCTTTTGAAACCTTCTTCTCGATAGGGTTTACCTTGTCCTTTGGC
ATATTATAAAAAAGAGGCTTTGAGTCGAATGAAAACTTTTTAATAAGCTT
GCGGCCGAGTTTATAGCCGTTCTTAAATCTGGTTGGTAATCGTGCCCTGA
TCTTCACTGTGATTTAGTCAAATGGAAGAACTGTTTATGATAGCTAATTA
AATCATTCAATTTTATAGGTAGCGGCACAAGTTTCAGTCAATGGACAAGT
ATTGGTTGGTCAATCAGCTATTTTGCATATAAAATTTCGTCCTGTCACCG
GTACACGAAACTGATTTTCCTTCTTTCGTAATAACTATTTTTGAATTTGT
TTCAAAAGTAATTGAGGTCCTAGAACCATTGAATTTAAATCAACTTTTCC
TAAGCAAGGAAAAATTGAAACTTTAACTCATTTACAATGACGGTTTGAAT
TTTGAATCAAGCGCTTTCTTTGTCATCACGCGATAGATTCAAAAGTTTTG
CAATATATTTGATTTTTGATTCGAAATTTATGTGAAAACGACGCTTTTCG
AAGTAAAATAAAGTGGCATCATTTTCAAGCCAAAATTTATAGCTCCTCCG
GGGTTTTAATTGCGATGGTTTCCTCTTTGCTAGTTACGTCACTCTGATTC
TCACCCAGACCCAAAGACAAAGTATGTCTAAAAGTTCACAGGGAATCCAG
TTACTCAAAATAGTATCATTATATTTTCCTACTTTTTTATCGTAGAATCG
AAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTACT
TTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAGGT
AGGCGGATGGGAGGATTTAACTTTGTAATCATTGTCGACGGAGAGAGTCT
CCCATTTTATACAGTTGTCTTGAAGGTAGGGGGAGCCGTGGTACCGCTTT
TTTACCTAGATCTTCCTACTCACCCTTGAATCTTTTATGTAGATACTGAC
ATTAGGTAGGTAGGTAGATATTTTAAGTTTTAAGGTGTAGTTGGTAGTGT
TAAAAGTTACGTCTCCGTGAATTACATAAAAGATGATTTTTGTCTTAAAG
TTCTGAATAACTTGCAAAAATTTAATTTTCTGAGTATGATTACAATTTCT
TCTGTATTGGTCCTGTAACCTCAACCGTATTTCAAAGAAGTTCAGAAACT
CACTCTGTAATGGAAGGCTTCAAATTCTTGATGAGTTTCAAGCTCGATAA
CAAAATTCCAACTTTGGTTTCATGTTTTCTTACTAGAAAATTCTCAAGGA
AAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTGATGGAGAA
CCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGATTAACTGA
TAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAAAAATGAGG
ATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAAGTCAAAAT
TTAAGCTAAGTTTTTTTGTAATAAGTGAACATGTTTGTTTGTGGTATCGA
CCTGGCAAGAAGAGTTTTCGGTAGAGTGGTTTGGATTTAGTGAAAATACA
ATGATGTTGAAGATTGATACTATCAAGTCACTTTATCTGCTTTTGGTGAC
AGATATGATAGAGGAC

Coding sequence (CDS) from alignment at sc0000020:266819..271884-

>TCONS_00002495 ID=TCONS_00002495|Name=TCONS_00002495|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000020:266819..271884- (Clytia hemisphaerica)
GATGGGAGACCACCAATCTTTTTTGAGGCAAAACAAACAATAACATACGA
TAACAAATCAAACAAAAAATATATAAGATATTTGTTTGATTCAAAAATGG
CTTGTGGAGCTATCACCGGTTTTGAAGTATATTATTATAAATGCCCATCT
AGAACCAGTTCAATGACATCATTTGGACATATCAATGCTCCAACTTATTC
CGAAAATGTAAAAGAGTATCAAGGGGAATGTGTTGAAAACGCTGTAAAAG
TTGGTGATGAACTATTAACAATGAAGTGTTTATGGAATGGAACGATTGCG
TCAATGACTGGACAATGCATTTGTTTACAGGGATACCAGAGAGAAGGAAA
TGAGTGTATAAAATGTGACAGTCAACATTTCAAGCCAACACAAGGAAATG
AACAGTGCACACAATGTGGCTTAAACTCACTTTCTAGCATTGATCGAACT
GTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCAGTGAAGTCAACAA
TCCTTTAGCTGTCTGTTACAGAATCCCAGACACTCTCCATTCATTCAGCA
TTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTGGTCTCATCCATCA
CAAGTCAACAAAACAAATATTTACATTGTGGATTGCAAAGGTTGTCCCTC
TGGTGTTTTCCCTAAAACCACAACCAACAAATTTATTACCATCAATGGTC
TTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTTCTCAAGTGAAGTT
TCAAGGATGATCGGTGAAAATCAAACTTCGGAATTCAAATCGTTCAAAAC
ATTACCAGGAGTCCCTGGCATGGTCCAAAATCTGCGACAAAAGACACTAG
ACAATGGAAAGTTCGAATACATTGAACTGAGTTGGGACGAGCCTTTTGCT
AAAGGAAACGATGACATTACATATTTAGTAAAATATGATGGCTCTACAAG
GTCTACAACCTCAACCCGTTACATCATACATGAGATCACTGAAATTGACA
ATTTTAAAGTAGCGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGGT
CAATCAGCTATTTTGCATATAAAATTTCGTCCTGTCACCGAATCGAAAAA
TCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTACTTTTAT
TCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAGAAAATTC
TCAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTGA
TGGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGAT
TAACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAAA
AATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001335	XLOC_001335	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002495-protein	TCONS_00002495-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000020	supercontig	sc0000020:266819..271884 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.75374	0.633633	0.647424	0.489448	6.06371	5.12399	4.17694	3.59757	2.94256	3.68207	4.40689	2.14834	10.2644	9.10423	4.39195	4.73387	3.04377	3.60355	8.21917	11.9245	2.87616	2.31664	1.55397	2.06958	3.68351	3.26586	3.6708	2.05388	1.81943	1.3814

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR003961	FN3_dom
IPR009030	Growth_fac_rcpt_

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00002495 vs. Swiss-Prot (Human)
Match: EPHA7 (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 6.253e-20
Identity = 81/310 (26.13%), Postives = 128/310 (41.29%), Query Frame = 2

Query:   62 NKKYIRYLFDSKMACGAITGFEVYYYKCPSRTSSMTSFGHINAPTYSENVKEYQGECVENAVKVGDELLTMKCLWNGTIASMTGQCICLQGYQREGNECIKCDSQHFKPTQGNEQCTQCGLNSLSSID-RTVCNCLYKNKREVSEVNNPLAVCYRIPDTLHSFSIANITSSSLEITWSHPSQVNKTN--IYIVDCKGCPS------------GVFPKTT--TNKFITINGLGAFADYEISVTFSSEVSRMIGENQTSEFKSFKTLPGVPGMVQN-LRQKTLDNGKFEYIELSWDEPFAKGNDDITYLVKY 937
            +KK     F    AC A+   +VYY KC S   ++  F      +   ++ E +G CV +A +  +    M C   G      G+CIC  GYQ++G+ C  C    +K +  + QC++C  +S S  +  + C C     R  S  + P   C R P    +  I NI  +++ + WS P+     N   Y + CK C              G  P+ T   + ++T+  L A A+Y   V   + VS +    +     S  T    P  V   ++++ L       +ELSW EP         Y +KY
Sbjct:  178 SKKGFYLAFQDVGACIALVSVKVYYKKCWSIIENLAIFPDTVTGSEFSSLVEVRGTCVSSAEEEAENAPRMHCSAEGEWLVPIGKCICKAGYQQKGDTCEPCGRGFYKSSSQDLQCSRCPTHSFSDKEGSSRCECEDGYYRAPS--DPPYVACTRPPSAPQNL-IFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGSNIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSGVMKERVLQRS----VELSWQEPEHPNGVITEYEIKY 480

The following BLAST results are available for this feature:

BLAST of TCONS_00002495 vs. Swiss-Prot (Human)

BLAST of TCONS_00002495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EPHA7	6.253e-20	26.13	Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 ...	[more]

You are here

TCONS_00002495 (transcript) - C. hemisphaerica