TCONS_00002515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002515
Unique NameTCONS_00002515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002515 ID=TCONS_00002515|Name=TCONS_00002515|organism=Clytia hemisphaerica|type=transcript|length=1513bp
CTCCGAGagctataaaaagaaaatatgcaACGAAAGAAATCAAGATTGAA
TCCAGATGTTCTCAACCTTTCGAGCAACATCCTCCTACTGTTGACTCTTG
CTCATTCGAATGAGAAAGGTTCGAATAAGGGAGAGTCTACtgtatttttt
ccatattttacaaAAACATCCGTTAGGATCATTAAAGATATCTTACGCAT
GTTACATTAAATGGGCGACGATACCCATTTTTTTACCTACTTTAATTAGT
TATCAGACTGGTTCAACAGTGTCACGGGGAATGACGTTgaaatactttaa
taattgacgtcaaatataagATAtgaactgacgtcaaataaaaatacaaa
gtacgaagtaaatatttttccaaaaaggcATACATTCAAAACGCAGTTAA
AAGAGAAGAAGTCAGTTCAAGATTTCACAGTAGGAGAATCGGTTATCCAA
GTCAAGAAACTATACTTACAACgaaataaaatagaataatGGACAGTCAA
CAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAGGAAGTTTAGCAAA
AGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAACAGTACTATCGCAA
TCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCAAGAGGACAGTGAT
GGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAACATTGTGTGATGC
TTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTATGAAAACACACAGG
AGCAACTGCAATACTACAAAGGTGAAGCAAAGTCACAAACTTTATTAGCA
AAGACAGTAAAAGATGAATTAGCAGAAGCGATAGCTGAAAAAGACAAAGC
TAAACAAGAGAGAATTGAAGTTTTAAAACAATATGACTCATTCCTTGAAG
AACATGAACGGAAATTAAAGGTTTTTGTACAAGAGAAAGATAAAGAAGTT
GAAGATCTACAAGAGAAAACTAAAAACCAAGAAGAAACTATCAAATTACA
AAAGCAACAGATTACAGAACAAGATTCGAACATTGCAGAAGCACAAAAGA
AAATTGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAAAAAACCATGaaa
ACATTGCAAAATGAGACTGTTTTCCAAAACAACCAAATCGCCAAATTGAA
AGAAACCATCGAAAAGTTGCAACAAGAACAAaaatcACTTCATAACAACA
TCACATCtttacaacaaaaacaaaaatctaaGAAATGGTATCAACCACTC
ATGTTCTGGAAAAAATTTACAAGCTGTGGTGGAGCAAGACAACGCCCATG
TCAAACGAACAACGAGACTGAGTTTCCAGATATTGAAATTAATGTTGAAT
TTGTTGATGTTGCAGGTGAAACAAGCATCACCACAAtttaaattaaaaca
atttatttttttcgttttgtATATCATTTTATAGCTTGGTTTTAACAAGT
GTTCACttattttttgctaaatttttccgagccttatattaatatttttt
tgcttaatttttc
Run BLAST on NCBI

protein sequence of TCONS_00002515-protein

>TCONS_00002515-protein ID=TCONS_00002515-protein|Name=TCONS_00002515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MDSQQPSTVQLSVGSPGSLAKAVLVNSAAVLVNSTIAIDLQKAAAQKAVQ
EDSDGDCNAATTSQHSTLCDAYELKYSKVLKDYENTQEQLQYYKGEAKSQ
TLLAKTVKDELAEAIAEKDKAKQERIEVLKQYDSFLEEHERKLKVFVQEK
DKEVEDLQEKTKNQEETIKLQKQQITEQDSNIAEAQKKIGVFERKIGYKE
KTMKTLQNETVFQNNQIAKLKETIEKLQQEQKSLHNNITSLQQKQKSKKW
YQPLMFWKKFTSCGGARQRPCQTNNETEFPDIEINVEFVDVAGETSITTI
Run BLAST on NCBI

transcript from alignment at sc0000020:648212..653167-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002515 ID=TCONS_00002515|Name=TCONS_00002515|organism=Clytia hemisphaerica|type=transcript|length=4956bp|location=Sequence derived from alignment at sc0000020:648212..653167- (Clytia hemisphaerica)
CTCCGAGAGCTATAAAAAGAAAATATGCAACGAAAGAAATCAAGATTGAA
TCCAGATGTTCTCAACCTTTCGAGCAACATCCTCCTACTGTTGACTCTTG
CTCATTCGAATGAGAAAGGTTCGAATAAGGGAGAGTCTACTGTATTTTTT
CCATATTTTACAAAAACATCCGTTAGGATCATTAAAGATATCTTACGCAT
GTTACATTAAATGGGCGACGATACCCATTTTTTTACCTACTTTAATTAGT
TATCAGACTGGTTCAACAGTGTCACGGGGAATGACGTTGAAATACTTTAA
TAATTGACGTCAAATATAAGATATGAACTGACGTCAAATAAAAATACAAA
GTACGAAGTAAATATTTTTCCAAAAAGGCATACATTCAAAACGCAGTTAA
AAGAGAAGAAGTCAGTTCAAGATTTCACAGTAGGAGAATCGGTTATCCAA
GTCAAGAAACTATACTTACAACGAAATAAAATAGAATAATGGACAGTCAA
CAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAGGAAGTTTAGCAAA
AGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAACAGTACTATCGCAA
TCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCAAGAGGACAGTGAT
GGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAACATTGTGTGATGC
TTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTATGAAAACACACAGG
AGGTATGAATTTACTATAAAGTTTTTGTTGTTCTTGGCTTTGTTACCGTA
ACTTGTCAGAGATATCAAACCATTTTAGATACAGTCAAAGTTAAAGACCC
GGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGATTTTTGTAACCCTTA
GAGAGACTTTGAAAGGTGAAAAACCCGACCCTTACCGTCCGCACATACCC
AGCACCTATTTTTGCCTAAGTACTCCCCCCGGGGTTTAAGAGTACATGAT
TTCCATGTGTCCCTTGATTGAGAGTGTGCATAATCAAATACTGTTTTTAT
ACAGCGTATAAATAAATGATTTGTAGACTTAAAGGTTTTATTTTTACATA
AGTGTTCCCGTTTCATATCAGATACATAATTTCGTATCAGGAAAGTGTCT
GCCTATTGTTATGTTATGCTGATATAAGCGAAGAAACGTTTTTCTTTTCC
TCTATTAAACCAATCTTACTCCTCTACCGTGCCAATCCAATGTGTAAAAG
TTTGTGAATTAAAATTGATGAGTAAGCAAACGGTATCACTCTCATTTAAA
AACAAAACCTTTAATACTTCAATTTCAAAAACCTATTCAATCATTTCGAA
AATTGAATATCTATTGATTGAGCAAAATTTCCGATGAGAAACGAACGAAG
CTAACGAAGCTAACGAAGTATGAAACGGTACAAAAATCTCTTAGATAACC
AGCTTTGGTTTATTCTTTAAGTGGTGCCAAAAAAATATTTTACACCAGAC
AAAGCAGAATAAGCAAAAGATTTTGTGGGCTCGTACGACACCGAAAGGGG
AGAAAGTCGTTCTTTCTTTTGTTTGAAAATGATGTGTAAGCAAATGGTAC
GGAGATACGTCCAGGCACGACACAACGGGTACGGCAGGTACGGCGGATGC
ATAAAATCACTATAAAATCGCTTAAAATTTTTTTCATTAGCCGTACCAGA
TGTAAAAAGCTTCCATTGTACCTGACGTTAATTGATGACCTTTAACAACG
TAAATTTTCTGAAAATCGTTTTAGCAACTGCAATACTACAAAGGTGAAGC
AAAGTCACAAACTTTATTAGCAAAGACAGTAAAAGAAGAATTAGCCGAAG
CAATAGCTGAAAAAGACAAAGCTNTAAATTTTCTGAAAATCATTTTAGCA
ACTGCAATACTACAAAGGTGAAGCAAAGTCACAAACTTTATTAGCAAAGA
CAGTAAAAGATGAATTAGCAGAAGCGATAGCTGAAAAAGACAAAGCTAAA
CAAGAGAGAATTGAAGTTTTAAAACAATATGACTCATTCCTTGAAGAACA
TGAACGGAAATTAAAGGTAAGATTTTATCACAGTTGATACTCTCTAACTC
GACGTTCTACTATTCGATGCGCTCCATATGTATGTGTGTTTTTCTGCGAC
GGAGACGGCAAGGTTCTAATTTGTCTACATTCTTTACTGACTAAAATGAC
GACGGTAAATCAGCACTTTTACCGTCCTTAATTTTGCGGGTCAACACTGC
GGGTTATTCCAAATCACTTCAGTCACTTACCGTCCTCAAAAGTGCAAATA
CATAAAATCGCTATTATTGAAAGTCATTGTCAACAAGAAAACTCTCATAC
TAATTAATACGCTCCATTAGTCGATAAAAATCCAATTCCCCTTGAAAATC
GAATTAGAGAGCATCGATAGTATATCGTGTAAAAAGAAGGCATACAAAAG
CGTAATAAGAAATGGACACGTCGTTCATTCATGATATTTATGACGTGATG
TTTTATACGGAGAAACCCAGAATAGCCCGGGCGCTTACTACTAATTTTAT
TGTTCAAATTCAAAATTGGTGACAAACACCCCTTCTTTTTCGGGTGTTTC
CGTATAAAAGATTACGCAATGAATATCATAAATTAAAATATATATTGGAA
ATTTATCGTGGCTTGGATCACGAGATTTACGTTTGGCTTTACGTAAATCT
TGTTATCCAAGTCACGATAAATTTCCAATATGAATATCACTGGGACGATA
TAGTCAAACTTATTTAGATCATAAATTGTAGTTCGTGTATGAGATTTCAG
TTCAGTTTATTGTTTACAGATAGGTGTCCGGGCCAACGTTCGTTCGTACG
TTTCAACGAAGTAAAATAGTTAGCCTCGTATAAGAGCAGCACAAGTAGTG
ATAGTCTCGACTGCTCAGGTACATATTTGAGAAAAAGTAAAACCCAAGAT
CTCCTACCAACCTGACGAAGAAAAAGAAATTCTGAACTTCAACACAGTCA
TAGAATGTTACAAAATTAAAGAGTAAAGCAAAAACTTAGTTTATTTGATT
GGTTGATTTTTGGTCTCTTATTAGGTTTTTGTACAAGAGAAAGATAAAGA
AGTTGAAGATCTACAAGAGAAAACTAAAAACCAAGAAGAAACTATCAAAT
TACAAGTAAGTTATAATACTCAGAAGTGTCAGCGTGACAGTCTATACTTT
GGTTGATGGTCATTGATAAACCTTGATTGCTACACAGGCGATTGAGGGTT
CGCTTCCCACTCACAGCGGTTCAATTGGCAAGTGAACGAACCTTCGCCCA
GGTCAACCAATGCGCATATGGTCTTAAAAACGTCAAAAAAGTGTAAATTT
CCGAAATTCAGTCTCTCACAGGGTCGATTTTCGAGCTTTTGTAAGGACAG
ACACACCCACCCCTCACCAGGACACTCATAATTGAAATCGTCTGTATTTG
TAAGTAAATGGGTCTCAAAACCTTCTACAACTCATCTAAAATAGAAAGTT
GAAATCTCGTATTAGCTATTTATATTTATACACGGGGTTAGTTACATTTA
GCATCGTCAAAGTACTTAATCATAGATCAACTATTTTACACTTGATATCC
AACTTTTTCAGAAGCAACAGATTACAGAACAAGATTCGAACATTGCAGAA
GCACAAAAGAAAATTGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAAAA
AACCATGGTAAGTTTGTGAGCCTCCCTTAAAGTATTTGAGATTAAAAAAA
AATTAAATTAAAACCTATTCTAAGTTAAGCGAAAGTGGATAATTATACAA
TTCGTGATCTTTATTCCATGGTAACCATTAACTCGATCAATAACTCAACC
AATAACTCGACCAATAATTCAACCAATAACTTACTGAATGTCTGTTGTTA
GTAAACCAAGATCCATTCTAAAACCTGGTGATGCTCTTAAATTCTGTATT
TGCTCTCCCTGGTCTAGTGAACATAGAAATATGATCAGACTCTCTCGATC
GCGTCACATGAACATGAAGCTCAAACAACATTTAATCATTTTACATTTTT
TCATTTTATAGAAAACATTGCAAAATGAGACTGTTTTCCAAAACAACCAA
ATCGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAAGAACAAGTATG
TTTATAACCAAAATTTAAAAAATACCTATCATATAGAACAAAAATATCCC
AGGGATACTAAAGCTGGTCCAGGCGTCTGAATAGTATTACTCTGCAAATT
GACGGAGATTTGCGTAAAAAATTAACCCTTGCGTAAAAAATAACCCTGGC
GAAAAATAACCAAAAATATTTTACACAGTTATCCAATTTTTTGCAAATTT
TGCTGAATAAGGCAATCTAAATCAATTTTTGCGATCCTACCTGAGCATAT
TCCAGTACCGTTTTCGCATCTGTACCCCTCCCAAAAGAACAACCAAATCA
AAACCATCCACTTTCTTTTTGTAGAAATCACTTCATAACAACATCACATC
TTTACAACAAAAACAAAAATCTAAGAAATGGTATCAACCACTCATGTTCT
GGAAAAAATTTACAAGCTGTGGTGGAGCAAGACAACGCCCATGTCAAACG
AACAACGAGACTGAGTTTCCAGATATTGAAATTAATGTTGAATTTGTTGA
TGTTGCAGGTGAAACAAGCATCACCACAATTTAAATTAAAACAATTTATT
TTTTTCGTTTTGTATATCATTTTATAGCTTGGTTTTAACAAGTGTTCACT
TATTTTTTGCTAAATTTTTCCGAGCCTTATATTAATATTTTTTTGCTTAA
TTTTTC

Coding sequence (CDS) from alignment at sc0000020:648212..653167-

>TCONS_00002515 ID=TCONS_00002515|Name=TCONS_00002515|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000020:648212..653167- (Clytia hemisphaerica)
ATGGACAGTCAACAACCCAGTACTGTTCAATTAAGCGTCGGCTCGCCAGG
AAGTTTAGCAAAAGCAGTTCTAGTAAACAGTGCTGCAGTTCTAGTTAACA
GTACTATCGCAATCGATCTTCAAAAAGCAGCTGCGCAAAAAGCCGTTCAA
GAGGACAGTGATGGTGATTGTAATGCAGCTACCACAAGTCAGCATTCAAC
ATTGTGTGATGCTTACGAGCTCAAATATTCAAAAGTGCTTAAAGATTATG
AAAACACACAGGAGCAACTGCAATACTACAAAGGTGAAGCAAAGTCACAA
ACTTTATTAGCAAAGACAGTAAAAGATGAATTAGCAGAAGCGATAGCTGA
AAAAGACAAAGCTAAACAAGAGAGAATTGAAGTTTTAAAACAATATGACT
CATTCCTTGAAGAACATGAACGGAAATTAAAGGTTTTTGTACAAGAGAAA
GATAAAGAAGTTGAAGATCTACAAGAGAAAACTAAAAACCAAGAAGAAAC
TATCAAATTACAAAAGCAACAGATTACAGAACAAGATTCGAACATTGCAG
AAGCACAAAAGAAAATTGGTGTCTTTGAAAGAAAGATTGGTTATAAAGAA
AAAACCATGAAAACATTGCAAAATGAGACTGTTTTCCAAAACAACCAAAT
CGCCAAATTGAAAGAAACCATCGAAAAGTTGCAACAAGAACAAAAATCAC
TTCATAACAACATCACATCTTTACAACAAAAACAAAAATCTAAGAAATGG
TATCAACCACTCATGTTCTGGAAAAAATTTACAAGCTGTGGTGGAGCAAG
ACAACGCCCATGTCAAACGAACAACGAGACTGAGTTTCCAGATATTGAAA
TTAATGTTGAATTTGTTGATGTTGCAGGTGAAACAAGCATCACCACAATT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001345XLOC_001345Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002515-proteinTCONS_00002515-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002515-exon-sc0000020-1575043694:652416..653167TCONS_00002515-exon-sc0000020-1575043694:652416..653167Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1575043694:650952..651119TCONS_00002515-exon-sc0000020-1575043694:650952..651119Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1575043694:649863..649943TCONS_00002515-exon-sc0000020-1575043694:649863..649943Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1575043694:649311..649406TCONS_00002515-exon-sc0000020-1575043694:649311..649406Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1575043694:648873..648956TCONS_00002515-exon-sc0000020-1575043694:648873..648956Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1575043694:648212..648543TCONS_00002515-exon-sc0000020-1575043694:648212..648543Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1510915933:652416..653167TCONS_00002515-exon-sc0000020-1510915933:652416..653167Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1510915933:650952..651119TCONS_00002515-exon-sc0000020-1510915933:650952..651119Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1510915933:649863..649943TCONS_00002515-exon-sc0000020-1510915933:649863..649943Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1510915933:649311..649406TCONS_00002515-exon-sc0000020-1510915933:649311..649406Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1510915933:648873..648956TCONS_00002515-exon-sc0000020-1510915933:648873..648956Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1510915933:648212..648543TCONS_00002515-exon-sc0000020-1510915933:648212..648543Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1491911889:652416..653167TCONS_00002515-exon-sc0000020-1491911889:652416..653167Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1491911889:650952..651119TCONS_00002515-exon-sc0000020-1491911889:650952..651119Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1491911889:649863..649943TCONS_00002515-exon-sc0000020-1491911889:649863..649943Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1491911889:649311..649406TCONS_00002515-exon-sc0000020-1491911889:649311..649406Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1491911889:648873..648956TCONS_00002515-exon-sc0000020-1491911889:648873..648956Clytia hemisphaericaexon
TCONS_00002515-exon-sc0000020-1491911889:648212..648543TCONS_00002515-exon-sc0000020-1491911889:648212..648543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:648212..653167 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.212248	0.277245	0.331517	0.587038	0.45856	0.318434	0.156982	0.201345	0.0653819	0.227125	0.0251962	0.19395	0	0.287478	0.530531	0	0.0418681	0	0	0.0375092	0.142411	0	0.0850819	0.605916	0.593659	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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