TCONS_00002525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002525
Unique NameTCONS_00002525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002525 ID=TCONS_00002525|Name=TCONS_00002525|organism=Clytia hemisphaerica|type=transcript|length=3812bp
CACCTTACTCCAGCCATTTTAATATATGATCATGTTTTCTCTTGCAGGTA
ACATATAAAAgacatttgaataaaaaaatagacaaaactTTATTTCAATG
CTGGTTCTTAATGGATAGAGATtgatcatatttttcttttttatgagaat
ttgATATTGTGGTGCAGTGAGACAGAAAGTTAATTTTCAAGATGAGCAGT
AGAAAAGAATCATCATGCACCAACCAAAACACGTTAACAACATCTATTGC
CAAGATAGGGTCTGCCGTCAACAGTCCTCGAAATCGATTATTTCAAATTC
GGCAACAACAAACACCAGTTTCCAGTAGCTCATCTATATACAATCCACCT
CAAAGACGTGTGGTGAACTTAGATACTTGGCCAAACAATGCTGGTAGCTT
TGACAATAATAATGCCGCTATGGCTCAAATGTATAGCAGCAGATGGGGTG
TATATGATAATACCACATTCAATATCGGTTACAATGATGGAGGATTCTCA
AAACTACCACCACTGAATATGAATGGTATTGATAATAATAGTATGAACAA
TGTAGACCATAATCAATTCTCACCTAAACACACCATGATGAACAACAGCC
CTAATATGAGTCCCAACAACTATATGCAACAAAATATGAACAACAACCCA
TTTACAACGGTACAGACTTCCAATAGTAACACGTTGAATGATAGTCTAtt
tcaccagaatcaacaacaacagcaaaatCTGAACACTCATAACAATCATC
AGATAAACGTTACAATGCAAAATTCGAACTTTCATCACACAAATAACCAA
ATAAATAACACAACcacaaactttcaaacacaacACTCCCAACAACCTTG
TATAGATCTAAATACAACGAGTTTTAACCCGCAACACACGATAGAACAAC
AAAATAACACGAACACTTTCTTCCAGCAAAGCCAACAGACCCAGCATAAT
GTGGATCATCGACAGACTATAAATAGTGTAAATAACACAAGCAATTTTCA
ACAACAGAACATTTTTAACCAATTCGATCAACAGCAAACTGAAATAAACT
CTGCAATTCCTCAATCCTTAGTTGATATTGTTATGGAAATGGAAGAAGAA
ACTCCCGAACAAACATTTGAGCAGATGCTGACAGaccataacaaaaatat
tcaaaatacttGTAGCTATGGAAACTCTCCAGTCCCAGAGACTTTCAACG
ATGATTCCATGATGGATATAAGTGATATGAATGACATTTTTACCAATATT
CCATCAATAAGGCCACCTTCTACGTGGAATTTCGATATTGTtgaacaaaa
caataaaatgaatATAGAAAACTTTGGATCGTCTACTTCACACTTGATTA
ACGAACTTAAAAAAGAGAATCTGAAAGCAGAGCCAGCGGTGTCTATAAAC
TCGCTATCAACAACATCAATGATAACAGAGCAAAattcacaaaactttca
acaaacttttgaaaacaCTCAGCAGACATTGCAAAATCAACaagatatga
aaaattcacaatTACAACAAACTTTACATAGTGAGCAAATCTTTCAACAA
AATAGACAAAATCATCAACCATTTGTACAACAAAGTCACCGACCAAATCA
GCAACATGCCTTTCAAGAGCAGAACTCGGAACTAAGTCAAAAACCTCAAC
AAACTCAACAAACTCAACAGACTCAACAACAATTTTTGAACCAACAAACT
CAACAAACTCAAGAGAATTtacaacaaaaccaaaaaacaaaagaacaaca
TCAAATCTTACAGCAAAATAAGCAAAATAATCAACAGACCTCAACGCCAC
AACGACAAGAgcaacaaaaatatcaacaacaacaacaacagcagcaaAGT
CAAAGGCAAGAAGAAGAGGAAGAGGAAGATATCCCAAgtgaaatttttga
caaaaatggcGAAACGTTCCTACACTTGGCAATCCACAACAGAGATATCA
AACaatgtttggaaattttggaaacaCCTGTCCTGAATAAAGCAATCAAT
GTTAAAAACGCCAGTAAGGAGGTCCCTATCCTGATATTACTGAAAAAATG
TTTCACACAATGTGACAAAATCTTGGAGAAGTTTTTGGATCTAGATGTCC
GTGTGAAAGCTATTGATCATTCAGCCAATAACATTTTCCATCTTTCAATA
TCTGAAGCACCTGATGAATCTCAATGCCTTCAAATCCTGGACATTTTGTT
TAAATATTCAAAATACAAAGAAGATTACAAATGGCTGATGAACCAACGTA
ATGTATCAGGTTACACCCCAAGCCATATTGCAACTATCAGAGGTTATGGA
AAAGCAATATGGAAATTTCACGAAAACGAGGCTAACCTTAACCTACAGGA
TTTTCAAGCACAAAAGACATGTTTAGTAATGGCTGCCGAAAACCAAAACT
GGCCTCTCGTCACAGAACTCATTAAAATGAATGTTAATGTCAACGTGGCC
GCCCGTGGCGATCAACGGGCAATTAATTACGCCATTAAATCAAGTCGGGC
GGACATCATAACTTTGCTGTTTGAGCACGATACAGAATGTTTGAAATGGA
AAGATATTGTCCCATCAGAGGAGatTGAAAAATTGGTTCGTAAGTTGATT
CGAAAGAAAAGGCGAAAGAAGAAGGAAGGGAAAGTGGAACGCGAATGACA
ATGAATAACTACTAGTGATGGAATTCTGGGGCAAAAATCGGTACTAGGTT
ATGTGCGGTCGGCAAGGGCCGGATTTCAGAAGTCCGGTCCGCACATTCCC
GACACTCTCTGACCCTAGTACCCCTTCTCCACGGGGAACAAAAAATGGAT
GAATGGATAAATGGATGGAAGAATATCTGAATAGGCCAttgatcatgggt
aatcaggactctATTAATGGCTTCCGGTTGGCTAGATGCaaaattcttca
aatcttcaaaactttggacgaatagtaagtcgtcattagcgcgcagtggt
cttgattacccattacgctttgcgactgtgaaatgaccTATGAAGGAACG
AATGGATTGTTTACTGTATAGATAAAAGAGTAAATGAATGAGCGGGTGAC
TGACTCGATAAGTAAACTTTTGCTCAAAAACAGTAAAATCGTTTTCTATG
GTCTATCTTCTGAATCAGGCTTCCAAATGTCAATTTCTGATAGATGATGT
GTGATGGCGTCAAAAGCTTTCAACAACTTCAAAATCGATCGAATGTGATT
GTGGTTCTTGGAATCTTAACATATTTCGGAAATTTTTCGACAGGCCCATG
GTATGTATATCTGACATTGCCAAAACCCTTttggaaaataatatttttta
gaataaattGAGCATCCGCACAAAAAAAACTGGGCAAAAATTTATAAGTC
ATGTCCAGTATATCTGACATTGGGCCTGGCGGCTAACAACTGGTGTGGGC
AAATATACATGCCATCGGctgctcaaaatatttttctcattttcttccGC
CGAAAACAACTGCATCACctcgaaaatttttgttaatttcttttgcaatt
ttccCCCTTGGGGGCGGAAagaattaattttaatttttgagtgTTAATTT
AGGCCTTCTAGCTCTACCAAATAAGTAAAAGAAGAACTGGATATATAatc
aatttgtttttaaagattgTTTAGCTTCGAACATATTGTTATATGCGTTT
ATACACGATTacttaaatttaatcaaatttctgtacataaattatttttt
acccaaaattttaacttttttaacactttctttaaaaaaatatactaaaa
tgcttgaaaaattgtttgaattgaaatatttacattgaaaataaaaatca
tcaaaattaaaa
Run BLAST on NCBI

protein sequence of TCONS_00002525-protein

>TCONS_00002525-protein ID=TCONS_00002525-protein|Name=TCONS_00002525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=818bp
MSSRKESSCTNQNTLTTSIAKIGSAVNSPRNRLFQIRQQQTPVSSSSSIY
NPPQRRVVNLDTWPNNAGSFDNNNAAMAQMYSSRWGVYDNTTFNIGYNDG
GFSKLPPLNMNGIDNNSMNNVDHNQFSPKHTMMNNSPNMSPNNYMQQNMN
NNPFTTVQTSNSNTLNDSLFHQNQQQQQNLNTHNNHQINVTMQNSNFHHT
NNQINNTTTNFQTQHSQQPCIDLNTTSFNPQHTIEQQNNTNTFFQQSQQT
QHNVDHRQTINSVNNTSNFQQQNIFNQFDQQQTEINSAIPQSLVDIVMEM
EEETPEQTFEQMLTDHNKNIQNTCSYGNSPVPETFNDDSMMDISDMNDIF
TNIPSIRPPSTWNFDIVEQNNKMNIENFGSSTSHLINELKKENLKAEPAV
SINSLSTTSMITEQNSQNFQQTFENTQQTLQNQQDMKNSQLQQTLHSEQI
FQQNRQNHQPFVQQSHRPNQQHAFQEQNSELSQKPQQTQQTQQTQQQFLN
QQTQQTQENLQQNQKTKEQHQILQQNKQNNQQTSTPQRQEQQKYQQQQQQ
QQSQRQEEEEEEDIPSEIFDKNGETFLHLAIHNRDIKQCLEILETPVLNK
AINVKNASKEVPILILLKKCFTQCDKILEKFLDLDVRVKAIDHSANNIFH
LSISEAPDESQCLQILDILFKYSKYKEDYKWLMNQRNVSGYTPSHIATIR
GYGKAIWKFHENEANLNLQDFQAQKTCLVMAAENQNWPLVTELIKMNVNV
NVAARGDQRAINYAIKSSRADIITLLFEHDTECLKWKDIVPSEEIEKLVR
KLIRKKRRKKKEGKVERE
Run BLAST on NCBI

transcript from alignment at sc0000020:819644..834542-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002525 ID=TCONS_00002525|Name=TCONS_00002525|organism=Clytia hemisphaerica|type=transcript|length=14899bp|location=Sequence derived from alignment at sc0000020:819644..834542- (Clytia hemisphaerica)
CACCTTACTCCAGCCATTTTAATATATGATCATGTTTTCTCTTGCAGGTA
ACATATAAAAGACATTTGAATAAAAAAATAGACAAAACTTTATTTCAATG
CTGGTTCTTAATGGATAGAGATTGATCATATTTTTCTTTTTTATGAGAAT
TTGATATTGTGGTGCAGTGAGACAGAAAGTTAATTTTCAAGATGAGCAGT
AGAAAAGAATCATCATGCACCAACCAAAACACGTTAACAACATCTATTGC
CAAGATAGGGTCTGCCGTCAACAGTCCTCGAAATCGATTATTTCAAATTC
GGCAACAACAAACACCAGTTTCCAGTAGCTCATCTATATACAATCCACCT
CAAAGACGTGTGGTGAACTTAGATACTTGGCCAAACAATGCTGGTAGCTT
TGACAATAATAATGCCGCTATGGCTCAAATGTATAGCAGCAGATGGGGTG
TATATGATAATACCACATTCAATATCGGTTACAATGATGGAGGATTCTCA
AAACTACCACCACTGAATATGAATGGTATTGATAATAATAGTATGAACAA
TGTAGACCATAATCAATTCTCACCTAAACACACCATGATGAACAACAGCC
CTAATATGAGTCCCAACAACTATATGCAACAAAATATGAACAACAACCCA
TTTACAACGGTACAGACTTCCAATAGTAACACGTTGAATGATAGTCTATT
TCACCAGAATCAACAACAACAGCAAAATCTGAACACTCATAACAATCATC
AGATAAACGTTACAATGCAAAATTCGAACTTTCATCACACAAATAACCAA
ATAAATAACACAACCACAAACTTTCAAACACAACACTCCCAACAACCTTG
TATAGATCTAAATACAACGAGTTTTAACCCGCAACACACGATAGAACAAC
AAAATAACACGAACACTTTCTTCCAGCAAAGCCAACAGACCCAGCATAAT
GTGGATCATCGACAGACTATAAATAGTGTAAATAACACAAGCAATTTTCA
ACAACAGAACATTTTTAACCAATTCGATCAACAGCAAACTGAAATAAACT
CTGCAATTCCTCAATCCTTAGTTGATATTGTTATGGAAATGGAAGAAGAA
ACTCCCGAACAAACATTTGAGCAGATGCTGACAGACCATAACAAAAATAT
TCAAAATACTTGTAGCTATGGAAACTCTCCAGTCCCAGAGACTTTCAACG
ATGATTCCATGATGGATATAAGTGATATGAATGACATTTTTACCAATATT
CCATCAATAAGGCCACCTTCTACGTGGAATTTCGATATTGTTGAACAAAA
CAATAAAATGAATATAGAAAACTTTGGATCGTCTACTTCACACTTGATTA
ACGAACTTAAAAAAGAGAATCTGAAAGCAGAGCCAGCGGTGTCTATAAAC
TCGCTATCAACAACATCAATGATAACAGAGCAAAATTCACAAAACTTTCA
ACAAACTTTTGAAAACACTCAGCAGACATTGCAAAATCAACAAGATATGA
AAAATTCACAATTACAACAAACTTTACATAGTGAGCAAATCTTTCAACAA
AATAGACAAAATCATCAACCATTTGTACAACAAAGTCACCGACCAAATCA
GCAACATGCCTTTCAAGAGCAGAACTCGGAACTAAGTCAAAAACCTCAAC
AAACTCAACAAACTCAACAGACTCAACAACAATTTTTGAACCAACAAACT
CAACAAACTCAAGAGAATTTACAACAAAACCAAAAAACAAAAGAACAACA
TCAAATCTTACAGCAAAATAAGCAAAATAATCAACAGACCTCAACGCCAC
AACGACAAGAGCAACAAAAATATCAACAACAACAACAACAGCAGCAAAGT
CAAAGGCAAGAAGAAGAGGAAGAGGAAGATATCCCAAGTGAAATTTTTGA
CAAAAATGGCGAAACGTGAGTTTATCTTTTTTAACGTTTTTTAACACTAA
GTTGAACAGGAGAATATTTATTCCCGAATGCTATTTATATTTTTGTTTGC
CCTGGATATAATTTTATTTTTTATCAAACAATGTTTTTTTAGGTTCCTAC
ACTTGGCAATCCACAACAGAGATATCAAACAATGTTTGGAAATTTTGGAA
ACACCTGTCCTGAATAAAGCAATCAATGTTAAAAACGCCAGTAAGGAGGT
AAGTAAAAAATTGCTCATAAAGAGTACACAACGTTTTTTGCCAGTAAGTG
CACTTATATAACACCCGCTGTAACCCCAGCCCAACTGGAGAATTTGGCAA
ACATTTCGTCGCCGGTGGAAAATTACCCTGGAATTTTAACCCCATTGAGA
AATTGACTTTGATTTCATCCCCATTTGAAATTCGATGCTTAAGAATTGCA
CTCCAATAAAACCATCTCCACTGGATTTTTTAAACTTGGAACAATAGAAT
TTCTCCATCAGGATGATCCTCCGGGGCTTTGAGACAGGGGTGTTATATAC
CATCATTCATATTTCCCTTCTTTTATTTTTCATTGGAAATTTTCCCCGCT
TTGAAACCCTTGTCTCGATGACCAGTAGTCTAGAGCTAGACTACTAATTA
ACATCAGTTTTACTCAAAAGTTTCTTTTAACAGTAGTAGAAAAAAGCTAT
CTAGAAGTTTGTTTACTTTTCCCGTACTGCTTTTTTCTTCTTTTTGACTT
TGAGGCAGGATTGTTCCTACGTTTTGTGTTAAAAGAATAGTGGTCTGGAA
ATCGAGGCTAAGAGACCAGGTGAAAAGCTTGCTTTGCCAGTAGAAGATAT
AATAATTTTCTTCCAATGGGTAATCAAGAATCAGCTCAAAGTCATCGAGG
AAGGGTCGAGGAAGCTAGCTTAGTGCGAAACATCAGACATGAATATCTTA
AATATTGTCATTGTTTTGTTAAATACTCATTACAGAGTTTGAAATCCTCT
GTCACGTCTTGACAAACTATTTCCGTCTAATATAGAAGCATAATTGACGG
AAATGAGAGAGTTTATATTTAACGAGTGAACTTCAATCTTTCGGTTTTGA
TTGTAAAATTGGAGAGAAAGCATTGAATGATTAGGAAATTCTATGTAAAC
GTACTATGAGTTTCTTAAATGAGCCCCCTCCCCAGCGGTAACTCTGATCA
CGATATCACGCAATTTTTTGTCTTCAATCACGATCCCGCAAATATGAAAA
AATGGACAATCACGCATCCCTTTGAAAAAGTCCAAATCACGATCACGTTT
TGACCTCTCATCACGCTATCACGTAATCATGCCCTAAAAAAGTCCCTATC
TACAATCAGGGACAAAATACTTGGCACAAAAGGGAAATTCACCGGGGTGT
TTTGAAACCACAATCGATTTGTAATTGCTCTAAAGTAGGTCTTAACTCTG
AGTTTTAACGCTAGACTTAAGACTTAGGACCTTAGGATCTGAGGATCCAA
AAGTTCAAAAATGGTCCAGTAGGGCTTGAAATATAGCCTAGAAANNNNNN
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NNATCAAGTTGAGGGCCTGAAATTGACATTCTCGCTCGAGCTTCAATTTT
CGAAAAATGGTAAATTAGCCAAAAGTGCAAATATATTATGGCACGGATTG
TAGTCATCACGAAAACCGCTCGGGGCCTCTTGAATAGAGGTTTAATTCAA
TACATATGTGCTAGCTCAATATGCATCAAATACAAACTAACAGATTTGAA
AAATCTCCTTTCCTAAGTCATGACTAACGAGCTATTCCTTAGAGGAGCTG
TTCGAGTTTTTGTCTTCAAGACACAAAAAAGGTACCGCCTAAAAATGGTT
TCCGGAAAGTACTTCCGTTGCCCTTAGCACAAATCGATTTGGTTTAAGAA
ATGTATGAATTTTGTTTGATAGCGAACCGATCATATAATGTTCTTTCGTA
ACCACAAAGAAATTGTGTTTATTTTGTCTTGACGCACAGCCGTTTTAAAT
CCCTTCTAAATGATCTAACAGTTGATATCTTTTAGAAATTTGGATTTTTC
GCAAATTATTTGAATGAATTTGGCAACTACAGGTTATCTCTACTTAGGAT
TTGATGTAAAGTATTAGAAATATCATCATATAAAACNAGAGACCAGGTGA
AAAGCTTGCTTTGCCAGTAGAAGATATAATAATTTTCTTCCAATGGGTAA
TCAAGAATCAGCTCAAAGTCATCGAGGAAGGGTCGAGGAAGCTAGCTTAG
TGCGAAACATCAGACATGAATATCTTAAATATTGTCATTGTTTTGTTAAA
TACTCATTACAGAGTTTGAAATCCTCTGTCACGTCTTGACAAACTATTTC
CGTCTAATATAGAAGCATAATTGACGGAAATGAGAGAGTTTATATTTAAC
GAGTGAACTTCAATCTTTCGGTTTTGATTGTAAAATTGGAGAGAAAGCAT
TGAATGATTAGGAAATTCTATGTAAACGTACTATGAGTTTCTTAAATGAG
CCCCCTCCCCAGCGGTAACTCTGATCACGATATCACGCAATTTTTTGTCT
TCAATCACGATCCCGCAAATATGAAAAAATGGACAATCACGCATCCCTTT
GAAAAAGTCCAAATCACGATCACGTTTTGACCTCTCATCACGCTATCACG
TAATCATGCCCTAAAAAAGTCCCTATCTACAATCAGGGACAAAATACTTG
GCCCAAAAGGGAAATTCACCGGGGTGTTTTGAAACCACAATCGATTTGTA
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NNNNNNNNNNNNNNNNATCAAGTTGAGGGCCTGAAATTGACATTCTCGCT
CGAGCTTCAATTTTCGAAAAATGGTAAATTAGCCAAAAGTGCAAATATAT
TATGGCACGGATTGTAGTCATCACGAAAACCGCTCGGGGCCTCTTGAATA
GAGGTTTAATTCAATACATATGTGCTAGCTCAATATGCATCAAATACAAA
CTAACAGATTTGAAAAATCTCCTTTCCTAAGTCATGACTAACGAGCTATT
CCTTAGAGGAGCTGTTCGAGTTTTTGTCTTCAAGACACAAAAAAGGTACC
GCCTAAAAATGGTTTCCGGAAAGTACTTCCGTTGCCCTTAGCACAAATCG
ATTTGGTTTAAGAAATGTATGAATTTTGTTTGATAGCGAACCGATCATAT
AATGTTCTTTCGTAACCACAAAGAAATTGTGTTTATTTTGTCTTGACGCA
CAGCCGTTTTAAATCCCTTCTAAATGATCTAACAGTTGATATCTTTTAGA
AATTTGGATTTTTCGCAAATTATTTGAATGAATTTGGCAACTACAGGTTA
TCTCTACTTAGGATTTGATGTAAAGTATTAGAAATATCATCATATAAAAC
GTTTTCCTATAAGAACAAACCATATAAGATTATCAGACTTTGATGGCTAA
AATATTAAGAACATGTTAAGAACATTTCAAGGCTTTGCCCGGGAATTTAA
AACACCTATTTTCTTAGGAAACGGCGTAGAAAATACTCATTAAGTAATGA
AAAATGAATATTTTAAGAATATCTTCATGCTTAAAACTCAAAAGGTTTAG
GACATCCGAAGGCTTTAAAAATTTTGGATATTCTTATAAAAAACATGTAA
AACCGTGAAATTAGCTAGACAAAAATTGAAGAAACGTTGTGTCTGTGATA
GGGTGGGACCATGTTCATTCTTTTAAAGTTATATATTCACACTATCATTC
CATTTTCTAGGTCCCTATCCTGATATTACTGAAAAAATGTTTCACACAAT
GTGACAAAATCTTGGAGAAGTTTTTGGATCTAGATGTCCGTGTGAAAGCT
ATTGATCATTCAGCCAATAACATTTTCCATCTTTCAATATCTGAAGCACC
TGATGAATCTCAATGCCTTCAAATCCTGGACATTTTGTTTAAATATTCAA
AGTAAGTTAAAAAGTTTTATGAACAGCATGTTTTATCAGCGATCCAAAAA
ATATCTGCAATCTGATTGATTAAGAAGAGTACAATATATCTTGTATTTTA
CATGTAAAAATATAAATTGACGAAAAGATGTTGTTGTATTGTAGCGGTAG
AAGCAATCTAACGTGACTTTGCTACAAAAGTGTCTTCCATCATAAAAAGT
GTTTTTTTGGGTCACCGATAAACCATTTATCAGACATTTGCTCGTACAAT
ATGGAAATATTGTAATCGCAACTGTCTGATAACTATTACATATCACACAC
CCCTGTCTCATAGCCCCGGTGGAACTTTTTTCCACAGTGGGTGTGTACAA
TGGGAATGGAATTTCTTATCAAAATCTCTACGGGGATAAACATTATATTG
TTCTCATCTCATAAGATCTAGTGGGGATGGCTTTGGAGTGCAATATCTTC
CATTGAATTTCAAATGGGAATGAAATCATGGTCAATTTTACAGTCGGGCT
TAAATTGTAAGGTATTTTTCCCATCGGGGAGGAAATTTTTGCCAGATTTT
CAACTAAGGCGAGGGACCGCAGGGCTAGTGACACCAAAGTGTTTCTAGTT
ACGGTAAAAATCTAAAAGACTGCAAAATACAAGAAAGGTTTTGTGAATAC
ACCCAAAAACACAGGGTTTGATATCATGAAAGCTCACATGCTTTTCTTCT
CATTCATTAGATACAAAGAAGATTACAAATGGCTGATGAACCAACGTAAT
GTATCAGGTTACACCCCAAGCCATATTGCAACTATCAGAGGTTATGGAAA
AGCAATATGGAAATTTCACGAAAACGAGGCTAACCTTAACCTACAGGTAT
GGTGGTAATTTCCATAGGCAAACGGAGGCTACGGTATTATGTGCCGCCCT
TAAGGGTAACTTTTTTGGATTTCCAAAGTCCCACTAAGGGTCAGAGAAAT
AGGAAAATTTAAATTTTTTACCCCCGGAAAGATCGAAATTTGGTCAAATT
TGTCCCAATAAGGGTTTTCCTTAGTTTTCTCCTTTTTAGTCCCGGTAAGG
GTCCAAGAGTCGAAAGCCGAGCGGCACCCCCCCCCATCNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNCTATTATAACTTTTATAACTTAAGACTTGA
TATATATGATACTTCTCGATACTTCTTTTCAGGATTTTCAAGCACAAAAG
ACATGTTTAGTAATGGCTGCCGAAAACCAAAACTGGCCTCTCGTCACAGA
ACTCATTAAAATGAATGTTAATGTCAACGTGGCCGCCCGTGGCGATCAAC
GGGCAATTAATTACGCCATTAAATCAAGTCGGGCGGACATCATAACTTTG
CTGTTTGAGCACGATACAGAATGTTTGAAATGGAAAGATATTGTCCCATC
AGAGGAGGTAAAGGGTTTTTGAGTTTTAAGAGAATACTTTTTTGTAAGAA
CGTCGAGGCTTATTTTCATATTACTTTATGAGTATTTTGATAGAAAATGA
TCATGTATTAAAAACACGAGTCCTTTGAGATGGTAAACAGAGGGATTTTA
GTTTGTGGATTTTTCTATTGCATTTTTGAAATTGTAGAAGTTCTGCATCG
ATTGCGGTACAGTATATTCACTCATAGGCATTTGAAATAAGGCCATGGGA
CCGGAAAAAAACTCAAAGTTTTACTTACTTGGCTTATATCCTCAGTATAC
TTTTTTTTAGATTGAAAAATTGGTTCGTAAGTTGATTCGAAAGAAAAGGC
GAAAGAAGAAGGAAGGGAAAGTGGAACGCGAATGACAATGAATAACTACT
AGTGATGGAATTCTGGGGCAAAAATCGGTACTAGGTTATGTGCGGTCGGC
AAGGGCCGGATTTCAGAAGTCCGGTCCGCACATTCCCGACACTCTCTGAC
CCTAGTACCCCTTCTCCACGGGGAACAAAAAATGGATGAATGGATAAATG
GATGGAAGAATATCTGAATAGGCCATTGATCATGGGTAATCAGGACTCTA
TTAATGGCTTCCGGTTGGCTAGATGCAAAATTCTTCAAATCTTCAAAACT
TTGGACGAATAGTAAGTCGTCATTAGCGCGCAGTGGTCTTGATTACCCAT
TACGCTTTGCGACTGTGAAATGACCTATGAAGGAACGAATGGATTGTTTA
CTGTATAGATAAAAGAGTAAATGAATGAGCGGGTGACTGACTCGATAAGT
AAACTTTTGCTCAAAAACAGTAAAATCGTTTTCTATGGTCTATCTTCTGA
ATCAGGCTTCCAAATGTCAATTTCTGATAGATGATGTGTGATGGCGTCAA
AAGCTTTCAACAACTTCAAAATCGATCGAATGTGATTGTGGTTCTTGGAA
TCTTAACATATTTCGGAAATTTTTCGACAGGCCCATGGTATGTATATCTG
ACATTGCCAAAACCCTTTTGGAAAATAATATTTTTTAGAATAAATTGAGC
ATCCGCACAAAAAAAACTGGGCAAAAATTTATAAGTCATGTCCAGTATAT
CTGACATTGGGCCTGGCGGCTAACAACTGGTGTGGGCAAATATACATGCC
ATCGGCTGCTCAAAATATTTTTCTCATTTTCTTCCGCCGAAAACAACTGC
ATCACCTCGAAAATTTTTGTTAATTTCTTTTGCAATTTTCCCCCTTGGGG
GCGGAAAGAATTAATTTTAATTTTTGAGTGTTAATTTAGGCCTTCTAGCT
CTACCAAATAAGTAAAAGAAGAACTGGATATATAATCAATTTGTTTTTAA
AGATTGTTTAGCTTCGAACATATTGTTATATGCGTTTATACACGATTACT
TAAATTTAATCAAATTTCTGTACATAAATTATTTTTTACCCAAAATTTTA
ACTTTTTTAACACTTTCTTTAAAAAAATATACTAAAATGCTTGAAAAATT
GTTTGAATTGAAATATTTACATTGAAAATAAAAATCATCAAAATTAAAA

Coding sequence (CDS) from alignment at sc0000020:819644..834542-

>TCONS_00002525 ID=TCONS_00002525|Name=TCONS_00002525|organism=Clytia hemisphaerica|type=CDS|length=2457bp|location=Sequence derived from alignment at sc0000020:819644..834542- (Clytia hemisphaerica)
ATGAGCAGTAGAAAAGAATCATCATGCACCAACCAAAACACGTTAACAAC
ATCTATTGCCAAGATAGGGTCTGCCGTCAACAGTCCTCGAAATCGATTAT
TTCAAATTCGGCAACAACAAACACCAGTTTCCAGTAGCTCATCTATATAC
AATCCACCTCAAAGACGTGTGGTGAACTTAGATACTTGGCCAAACAATGC
TGGTAGCTTTGACAATAATAATGCCGCTATGGCTCAAATGTATAGCAGCA
GATGGGGTGTATATGATAATACCACATTCAATATCGGTTACAATGATGGA
GGATTCTCAAAACTACCACCACTGAATATGAATGGTATTGATAATAATAG
TATGAACAATGTAGACCATAATCAATTCTCACCTAAACACACCATGATGA
ACAACAGCCCTAATATGAGTCCCAACAACTATATGCAACAAAATATGAAC
AACAACCCATTTACAACGGTACAGACTTCCAATAGTAACACGTTGAATGA
TAGTCTATTTCACCAGAATCAACAACAACAGCAAAATCTGAACACTCATA
ACAATCATCAGATAAACGTTACAATGCAAAATTCGAACTTTCATCACACA
AATAACCAAATAAATAACACAACCACAAACTTTCAAACACAACACTCCCA
ACAACCTTGTATAGATCTAAATACAACGAGTTTTAACCCGCAACACACGA
TAGAACAACAAAATAACACGAACACTTTCTTCCAGCAAAGCCAACAGACC
CAGCATAATGTGGATCATCGACAGACTATAAATAGTGTAAATAACACAAG
CAATTTTCAACAACAGAACATTTTTAACCAATTCGATCAACAGCAAACTG
AAATAAACTCTGCAATTCCTCAATCCTTAGTTGATATTGTTATGGAAATG
GAAGAAGAAACTCCCGAACAAACATTTGAGCAGATGCTGACAGACCATAA
CAAAAATATTCAAAATACTTGTAGCTATGGAAACTCTCCAGTCCCAGAGA
CTTTCAACGATGATTCCATGATGGATATAAGTGATATGAATGACATTTTT
ACCAATATTCCATCAATAAGGCCACCTTCTACGTGGAATTTCGATATTGT
TGAACAAAACAATAAAATGAATATAGAAAACTTTGGATCGTCTACTTCAC
ACTTGATTAACGAACTTAAAAAAGAGAATCTGAAAGCAGAGCCAGCGGTG
TCTATAAACTCGCTATCAACAACATCAATGATAACAGAGCAAAATTCACA
AAACTTTCAACAAACTTTTGAAAACACTCAGCAGACATTGCAAAATCAAC
AAGATATGAAAAATTCACAATTACAACAAACTTTACATAGTGAGCAAATC
TTTCAACAAAATAGACAAAATCATCAACCATTTGTACAACAAAGTCACCG
ACCAAATCAGCAACATGCCTTTCAAGAGCAGAACTCGGAACTAAGTCAAA
AACCTCAACAAACTCAACAAACTCAACAGACTCAACAACAATTTTTGAAC
CAACAAACTCAACAAACTCAAGAGAATTTACAACAAAACCAAAAAACAAA
AGAACAACATCAAATCTTACAGCAAAATAAGCAAAATAATCAACAGACCT
CAACGCCACAACGACAAGAGCAACAAAAATATCAACAACAACAACAACAG
CAGCAAAGTCAAAGGCAAGAAGAAGAGGAAGAGGAAGATATCCCAAGTGA
AATTTTTGACAAAAATGGCGAAACGTTCCTACACTTGGCAATCCACAACA
GAGATATCAAACAATGTTTGGAAATTTTGGAAACACCTGTCCTGAATAAA
GCAATCAATGTTAAAAACGCCAGTAAGGAGGTCCCTATCCTGATATTACT
GAAAAAATGTTTCACACAATGTGACAAAATCTTGGAGAAGTTTTTGGATC
TAGATGTCCGTGTGAAAGCTATTGATCATTCAGCCAATAACATTTTCCAT
CTTTCAATATCTGAAGCACCTGATGAATCTCAATGCCTTCAAATCCTGGA
CATTTTGTTTAAATATTCAAAATACAAAGAAGATTACAAATGGCTGATGA
ACCAACGTAATGTATCAGGTTACACCCCAAGCCATATTGCAACTATCAGA
GGTTATGGAAAAGCAATATGGAAATTTCACGAAAACGAGGCTAACCTTAA
CCTACAGGATTTTCAAGCACAAAAGACATGTTTAGTAATGGCTGCCGAAA
ACCAAAACTGGCCTCTCGTCACAGAACTCATTAAAATGAATGTTAATGTC
AACGTGGCCGCCCGTGGCGATCAACGGGCAATTAATTACGCCATTAAATC
AAGTCGGGCGGACATCATAACTTTGCTGTTTGAGCACGATACAGAATGTT
TGAAATGGAAAGATATTGTCCCATCAGAGGAGATTGAAAAATTGGTTCGT
AAGTTGATTCGAAAGAAAAGGCGAAAGAAGAAGGAAGGGAAAGTGGAACG
CGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001351XLOC_001351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002525-proteinTCONS_00002525-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002525-exon-sc0000020-1575043694:832628..834542TCONS_00002525-exon-sc0000020-1575043694:832628..834542Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1575043694:832395..832500TCONS_00002525-exon-sc0000020-1575043694:832395..832500Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1575043694:823992..824182TCONS_00002525-exon-sc0000020-1575043694:823992..824182Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1575043694:823147..823282TCONS_00002525-exon-sc0000020-1575043694:823147..823282Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1575043694:821186..821410TCONS_00002525-exon-sc0000020-1575043694:821186..821410Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1575043694:819644..820882TCONS_00002525-exon-sc0000020-1575043694:819644..820882Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1510915933:832628..834542TCONS_00002525-exon-sc0000020-1510915933:832628..834542Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1510915933:832395..832500TCONS_00002525-exon-sc0000020-1510915933:832395..832500Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1510915933:823992..824182TCONS_00002525-exon-sc0000020-1510915933:823992..824182Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1510915933:823147..823282TCONS_00002525-exon-sc0000020-1510915933:823147..823282Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1510915933:821186..821410TCONS_00002525-exon-sc0000020-1510915933:821186..821410Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1510915933:819644..820882TCONS_00002525-exon-sc0000020-1510915933:819644..820882Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1491911889:832628..834542TCONS_00002525-exon-sc0000020-1491911889:832628..834542Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1491911889:832395..832500TCONS_00002525-exon-sc0000020-1491911889:832395..832500Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1491911889:823992..824182TCONS_00002525-exon-sc0000020-1491911889:823992..824182Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1491911889:823147..823282TCONS_00002525-exon-sc0000020-1491911889:823147..823282Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1491911889:821186..821410TCONS_00002525-exon-sc0000020-1491911889:821186..821410Clytia hemisphaericaexon
TCONS_00002525-exon-sc0000020-1491911889:819644..820882TCONS_00002525-exon-sc0000020-1491911889:819644..820882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:819644..834542 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0196934	0.0192042	0.0780845	0.0573169	29.3197	21.8782	22.2554	24.1589	9.68381	12.6784	6.53666	8.42895	7.40297	6.83459	8.57036	13.6067	4.65072	5.59009	4.65702	4.26226	3.51067	3.65937	1.62914	1.87837	3.47019	3.00041	4.83822	3.00122	0.996406	1.19504
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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