TCONS_00002662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002662
Unique NameTCONS_00002662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002662 ID=TCONS_00002662|Name=TCONS_00002662|organism=Clytia hemisphaerica|type=transcript|length=2368bp
CAAGTATTTTATTGCAAAGTGTTTGAATTCGCAGTGACTTGACATTTTTG
GTTGCACCTGCTTTACAGCCCTCGTGGCGTTTGTTCCTAGAACGAAAAAT
TTCCGCGTGTAACATCCGCACCAAATTTGTTTACATCGTGCATTCGAAAA
GTCAAGATGGCGGCTAAAATCAAGGCAATCGTTTCTCTTTTTATGGTAAT
ATTCTTCACAAATACTCACTCTGAAGATGTATCTTTTGCTTTTGGTAAGA
ACACTTTACATGTGACTTCTCAGACTCACAATATAACtgaaaatacaaga
tatattatGCACGATGTCAACCCTGGGGAGGGATTTAACCTAAGACGTGA
TGTTTACATTCGAATTGCAAATCTTGTAAAAAGActcaatgaagaagaaa
atcaacacTGGATTCTTGTTCTTGCTCCTTGGAAGCATCTGTACCATTGG
CAGAACAGATATTTGGATCAAAACGGTGAACCATGGTCAAACTTTTTTGA
CGTAGCAAGCCTGAATCGCTATGTTCCAGTTATGGAATTTGACGATTTTT
TACAAATAACTGGATCAAGTTCAATAGATCTTGTCATGTATCTTCAACGT
CATCCAGATGGCTTTTCAGGAGGTTGGAAAGAAATGTGTGAAGTTGGAAA
GTGTGGTGATAGAATTCCTTTTTCAAAGCAAGGGAACAAGTGGAGATCCA
ATTTTTGGGGGCATCATGAAGTTGTTGCGCAAGATTTAGATTGCTATGAT
GTGCAAGGACACGCAACCATCCTCATTGACACCTTAAAGAAAGTTAAAGC
AAGATCAATTCTGGTTGACAGATTTGAACAAGTTCTTCATACTGACTATG
GCAGTGTTGAATTTTACAAGGCACGAAGAAGTCTGGTTTTTGCTCAACAT
TTGCGTGAAGTTGCCGACAAATTTCGTGAGAAGAAATTAAAATCAACTGA
TGATAAAGATAAAACACCTTACGCAGATGACTGGAGAAAGCAAATGCCTG
AAGACGGATCGGCCCTCGGCGGACCCTATTTATCACTCCACATGAGGCGT
GGTGATTTCACGTATGCTCATCAAGAGACTGTTCCTTCCATTGAGGAGAT
TGGTACCGAGGTTACGAAACAGTTGAAAAAATACAAACTGAAGAAGGTGT
ACTTGGCTACCGACGGTACTGATGAAGAGGTGAAAGAATTACAATCTCAC
TTTGAAGCAAAGATTTACCGTATATCACGCACAAAGAAAGATGTAGAAAT
GTATCGAGACGGGGGTATTGCTATCATGGACCAATGGATTGCTGCTCATG
GCAGGTATTTCATTGGCACATGTTCATCTACATTTTCATTTCGTATTTAT
GAAGAACGAGATATCTTAGGATTTGACCCTAAAACAACGTACAATTGTAT
TTGTGGTCAACAAGCACCAAAAGACCGTTGTGAACAGCCTGGTGGATGGA
GAGTCAAATTCGGTTAAATCTGAATAATTGATTATCAATTTttgttcctt
aacacttttttcAGACAATATTCAGGTTCTATTgaattatttacattttt
tggaacttttggaaaaattagtTCACAATATTTACAAAGGCTTTAAAATC
TtcaatattttccaaatttcaatgTACTTTCAAGTCAGGTATTCAAAGTA
GTTATAATTGAATTTTCATTGAATTGTTCATTTCAGTATTTTGTCATTGA
TATTCATCGTCGTTATTTTCCTTACTTAACTtgatgggataaacttttgc
agGGATCAAATTTCCTGGTTGACCTTATCTTCGAAATGTTAAGATTCCGT
GGGGActtaattttttataaacatttcgcggataaggcctttccaaattt
ccattgagacTTAATTTCACGGATGACATCCAAATTCGTGAAATGTTATC
CAATTAAAGTAGCTTTCCATAACTTGTCGTGAAGAATTTGTTAACATTCA
ATAGCAGATGTTTGTTATAGAAAAATTCCAtgttaaatttttacattcgG
TGAgaaattttacaagattttttaagTAAATTCCATTCGTGAGATACCTC
GTATAAAGAAATACAGTAGCAAGGGATgttacctttttttattttgagaa
ataaGATACATGATAgcgttttaaaattttattcagTAATAGAATGGTGC
TTGGATAATGACTTTTATATAGAAATAATTTTATACTTCAACTTAACTTT
AATTAGCGtatacaaaattttgatagttACAATTTTCGTTAGTCCTCACT
AGGAATATTTTAGTAGCAATTTTTGACATAGGgtgaattttcttatttat
ttttttgtatcttaTTTATTAGCACAATAATaaatttcaaagatacaaat
ATAGTattctaaaataac
Run BLAST on NCBI

protein sequence of TCONS_00002662-protein

>TCONS_00002662-protein ID=TCONS_00002662-protein|Name=TCONS_00002662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MAAKIKAIVSLFMVIFFTNTHSEDVSFAFGKNTLHVTSQTHNITENTRYI
MHDVNPGEGFNLRRDVYIRIANLVKRLNEEENQHWILVLAPWKHLYHWQN
RYLDQNGEPWSNFFDVASLNRYVPVMEFDDFLQITGSSSIDLVMYLQRHP
DGFSGGWKEMCEVGKCGDRIPFSKQGNKWRSNFWGHHEVVAQDLDCYDVQ
GHATILIDTLKKVKARSILVDRFEQVLHTDYGSVEFYKARRSLVFAQHLR
EVADKFREKKLKSTDDKDKTPYADDWRKQMPEDGSALGGPYLSLHMRRGD
FTYAHQETVPSIEEIGTEVTKQLKKYKLKKVYLATDGTDEEVKELQSHFE
AKIYRISRTKKDVEMYRDGGIAIMDQWIAAHGRYFIGTCSSTFSFRIYEE
RDILGFDPKTTYNCICGQQAPKDRCEQPGGWRVKFG
Run BLAST on NCBI

transcript from alignment at sc0000021:151363..162291-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002662 ID=TCONS_00002662|Name=TCONS_00002662|organism=Clytia hemisphaerica|type=transcript|length=10929bp|location=Sequence derived from alignment at sc0000021:151363..162291- (Clytia hemisphaerica)
CAAGTATTTTATTGCAAAGTGTTTGAATTCGCAGTGACTTGACATTTTTG
GTTGCACCTGCTTTACAGCCCTCGTGGCGTTTGTTCCTAGAACGAAAAAT
TTCCGCGTGTAACATCCGCACCAAATTTGTTTACATCGTGCATTCGAAAA
GTCAAGATGGCGGCTAAAATCAAGGCAATCGTTTCTCTTTTTATGGTAAT
ATTCTTCACAAATACTCACTCTGAAGATGTATCTTTTGCTTTTGGTAAGA
ACACTTTACATGTGACTTCTCAGACTCACAATATAACTGAAAATACAAGA
TATATTATGCACGATGTCAACCCTGGGGAGGGATTTAACCTAAGACGTGA
TGTTTACATTCGAATTGCAAATCTTGTAAAAAGACTCAATGAAGAAGAAA
ATCAACACTGGATTCTTGTTCTTGCTCCTTGGAAGCATCTGTACCATTGG
CAGAACAGATATTTGGATCAAAACGGTGAACCATGGTCAAACTTTTTTGA
CGTAGCAAGCCTGAATCGCTATGTTCCAGTTATGGAATTTGACGATTTTT
TACAAATAACTGGATCAAGTTCAATAGATCTTGTCATGTATCTTCAACGT
CATCCAGATGGCTTTTCAGGAGGTTGGAAAGAAATGTGTGAAGTTGGAAA
GTGTGGTGATAGAATTCCTTTTTCAAAGCAAGGGAACAAGTGGAGATCCA
ATTTTTGGGGGCATCATGAAGTTGTTGCGCAAGATTTAGATTGCTATGAT
GTGCAAGGACACGCAACCATCCTCATTGACACCTTAAAGAAAGTTAAAGC
AAGGTAACTTCAAAAATAATATTGCCTTCCTTTGGCAGTTACATCAAAAT
GCCTCGAAAATGTCAATATGAAAATTGCGTAATCAGAGAACGTATGTCTC
GCTCATTATAAAAAGGCCGAGACAAACTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGTTCTCACACTTATGTCTTTTTTTTTCGCGTCCTTTTCCGT
GATTACTTTTATTTATATTTTTAAAGACAGGTAAGAAGGCATATTGATGT
AACTGTTTGGTAGGAAAAAACAACTTTTCCTTGGCAAAATGCAGGAGACA
AAAATTATTTATGTTGGAGAATTTTTTACTCTGGAATTTTTTTTCAGTAC
CATGAGAGGTCCTAAATCCGACACCACTGCCTAAATCCGATGGGGTCTTT
CAAAGATACAAACTAAAATAAAAACAAACCTTTCGCTGTGACGCAACGAT
GATACCAAAGTGTCAACTAAACTGAGAGATTTGATACACTGAACCAATTG
AACCAAATAACAATAATTGCTTCTTATAACAAAATATTTTTTTTTGTTGC
GCAATATGCACAACGTCATAAATGACAACAGTAGTAACAACATCATAAAA
AGTACCGTGAGTGGTCCTAAATCCGACAGCCCTGCCTAAATCTGATGGGG
TCTTTCAAAGATACAAACTAAAATAAAAACAAGCATTTCGCTGTGACGCA
ATGAAGATACCAAAGTGTCAACTAAACTGAGACATTTGATGCACTTAACC
AATTGAACCAAAATATTAATTGCTTCTTATACAAAACATAATTTTTTTAT
TACTAAATTGTTAACGTTTTAAACACGAGCAACAAATTCAGAAAAATAGA
TTAATTGACATCTTGACATTTTAGTCATCTTGTTAGATGTTTTGTTTCGA
GAATTCTTGCAATATAGTTTATTGCTTAACTTGGAGAGGGATTGTTTGTA
AACATAGAATTTTTTTTCATAGCAGTTATTTGGGGGGTCGGATTTAGACA
GGGCTGTCGGATTTAGGACCACTCACGGTAATGAGATGTTTTGATTTTCC
AAAGCTCACGAAAATATAAAAGAGGTCTGTGTACAAGCGTGCTCATTTTG
AAACGTTACGTAATCAAGCCTGGTTTTTATTACTTTAGACTGGCACTAGG
CTTGATTGCGGGCCTTCCGTAAATGAACATCCGGACTTATGGGTGGTAAA
GAGGGCGTTGATAAATGCCGCCTCATTGATTCGATGTTTGTTATTCAAAT
CAACTGCTACCGCATCCGCCCTTTTTTCAACTCTGCGCCATTTTTACAAT
TTAGTCTGTTTGTTTCTTGATGGAAACCAGTCCAAGTTGTTTCGTATTTT
TCCCGCACAAGTCACTTTTATTACAAAACTGTTATCGTTTTAAACATGAG
CAACTGATCCAGAATTAAAGGTAATTATTTTTACAACTCACACTTTTTAA
TTACATTAATTGACATTACAGCTATCTTGTTAGATGTTTTGTTTCGAGAG
TTCTAGCAATAGTTTATCGTTCAACTTGGAGAGGGAATGTTTGTAAACAT
AGAATTTTTTTTCATAACAGTTATTTGGGGGGTCGGAATTAGGCAGTGGT
GTCGGATTTAGGACCTCTCACGGTATCAGGTGTCAAGATCAGGAAAAACT
TAACAATTTTGAAAAATAATTAGGAAAAGGCAGCAGAAGTCTAAACTTTA
TATTATAGGATTAGAAACGCGGCTAGACTTACCGTCAACTGCTCTAACTT
GGGACTATCTGACAAAACATGGGACAGCAACTTAGCCACCATTTCACCGA
ACCTCCAAAGTCATTTGATTTTAGTTAATGAATGGCTTATTAAAAATTAC
ACAATTTCTCTTTCGCACTGAGTAGGCTTTTAAATCAAAATATGAAAAAA
ATCCGTAGTGGAACACACGCAAGTGTGTCAAAACAAATTTGTTGTCAAAG
AGATTTAACAGTAAGTGAAAATACAGGCAATATATCAACGGTTCCATGTT
TCGACCAATCGTCCCAAGTTAGAGCAGTTGACGGTATATACATCTTTTCT
TTCCCTTTTTCAACGATTGCAATGCTGACACAACACGTTGACGTCAAAAG
TATACCCCCCCATGAGAAGTACCTTAAGGGAAGAAGTTTTGGCGAATTGC
ATAAAAAATTCGCCAAAATTTCTTTCCACCAAATTTAAATTTATAGGTCA
TTTGCCAAAAAAAAATTCTTGCCAAATTTAATTTTTTTTCAATTTAGTCT
CCATTTCTCCTAAAAGCCCCTTTTTTTCCTCTTTGTTCAGCTAAAATATT
GAACAAAAATAGGTCGTTCCCCAAAATTAATTCTGGCCAAATTGACAAAT
TTTATTAGATAAATTGCCAAAATAAATTCCACCAAATTGCATCAAAATTG
ACGAAAAAATTTCTTTACTTAAGGTATATTGAAATCTGCTACAAAAACAA
AAATAAAAATATTGTGTATAGCTAAAAAACGTTACAAACCTATGTTTACA
TCTTGTTAGAGTAAACAGCAGAAACATCAAAATGATAAATGATAATATTA
AAGTTTTACAGGTTTTCTTTTTCCTGTTTTTATTTGGTTAAAAGGGGTGG
AGGCAAACTCTTTTTGATGCAGTTTGATGAAGTGTTATTTTTTGTATGAT
TAAGTCAAAACAAAAGATCTTTTTTGATGTGCACAATGCACAATTTGAAG
AGTAATTGAACAATTGGTTCCATTGTGGACACCTTGGATTGAGATCATCT
TGTCAATTATGATTATGATTTATAGTCACAAATAACAAATATAGCCACAA
ATAACAATTAGCTTGGAAATTATGAAGCGCTTTCATTTCACAACTTAGAG
ATAACAACTTACAATTTAAATCTCCAAATGGGGGAAATTTTCAGAACACG
ACACTGACCTTTGTATTAGCCCGAGTAAAATTTGTGATTGTTTGGTGTAC
AATGTGTTAGGAAGAATTTTTTTTGCTTTGCTCACCTGAAGATTCCAATT
AAGACTTGCAACCCTATCAAAAGGTGATTGGTGCATGATATGTCTAGGTT
TTATGTCAAAATTCAAAATGTTTATTCATAATCAGTCAGTAGAAAAAACT
GAAAATTAAGACTACCATTCAGCACACTTGGACCAGCAAATAGACTCCAG
TCTTTTTTCCACCGTGATTCCTTACAAAAAATAAAAAGGTTTTTTAGTCT
ATTTTGTAAAATGTTTTACAAATACTAATGTAGTCCTACTAATTATTTAA
GTTTGAAATGAAAATTATGGTTAGACATAAAGTAAAGTCATTAGAATGAA
GAATCAAATCATACTACCTTCTGTTCCCTTAACTAAGGCACTGCGTATGG
AGTACGAGGTTTTCTGATGTATAGAATCAAAATATTATCCGCTTAGCTAC
TTCATCATTTTATGATTTGTTTTAGATCAATTCTGGTTGACAGATTTGAA
CAAGTTCTTCATACTGACTATGGCAGTGTTGAATTTTACAAGGTATACCA
TTTTAAATCATTGTCGTTTGTTAATTAAGAGGTTTATTTCTTTTTCTCTA
ATAAAGTGTTTTCTTTTTGGCTATGTGTGTGTATTAAAGAACTTTTTAGT
TTGATAAAACATAGAATGCACCTCCCCCTTAGCTTAGGGCTGGGTGTTGT
GTAATAGAACTGGGGGCAGAGTTGATAGGTTGAAGATATTTTAAATTATG
TTAAAAATCTATGCTGTGGGGAAGGTTTTATCTCTCTCGAAAAAAATTTT
TACCTGCGGTGGTGGGGGCTATGTTTCTAGAATTTAGCTGGGGGCTATTT
TCCTTAGCCCCCTGAAAAATACTTGGGGCTGGACCCCTCTGCACACTATG
AAACAATTCCCTGAACAGCAAAATATATAATTACCGCAAAAGATTCGATA
ATTCAGCATTTAGGGATTATGATGCTACAAAGTTCTGAAAACTCAAAGTA
ATGAAATTGAATTGAATTATAATTAACAGGCACGAAGAAGTCTGGTTTTT
GCTCAACATTTGCGTGAAGTTGCCGACAAATTTCGTGAGAAGAAATTAAA
ATCAACTGATGATAAAGATAAAACACCTTACGCAGATGACTGGAGAAAGC
AAATGCCTGAAGACGGATCGGCCCTCGGCGGACCCTATTTATCACTCCAC
ATGAGGCGTGGTGATTTCACGTATGCTCATCAAGAGACTGTTCCTTCCAT
TGAGGAGATTGGTACCGAGGTTACGAAACAGTTGAAAAAATACAAACTGA
AGAAGGTGTACTTGGCTACCGACGGTACTGATGAAGGTAAAAGTATTTCA
CACGTAAAGAATGTATCTAAAGTCTGTCCAGATATAATTGGCAGTGGAAA
CAAGAATGCCTGTAACTTTTGATAGTCAAATATAACTATGCAAATTCTTT
TTGCTTGTTTTAGAGAATCAAAAGCGCTATATTTGAATGTATTTTTGGTT
GAAAAATTCGCGATTTTTAGTGGTTAAATTTGCGATTGCAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAATAAGTTGGA
GATTTGATATTTCACAGAAAAGTGCTACCAAGGGGTATTTAGGGTCCCAT
ATCTTCCGAAGGACTCTTTTGTTTACCTTGAAATTTAACAAACTTCCCAA
CCTAAGGTTGAACTACAACTGGTGTAAAAATGAACGTTATATCATAAGTA
GAAAAAAAGCTCAATTTTTGCAATCGCATATTTTACCACTAAAAATCGCG
AATTTTTCAACCAAAAATACATTCAAATATAGCGCTTTTGATTCTCTAAA
ACAAGCAAAAAAAATTTCCATAATTATATTTGACTATCAAAAGTTACAAG
CATTCTTGTTTCCACTGCCAATTATATCTGGACAGACTTTAGGGTGGGGA
TTTATTTTGGCGGCTGGTGGAAGAAAGAAATTCTTAGGGGAATTTAATTT
TTTCAATTTCGGCTAAATTACTATTGGATGGTTTCGGCTTACAAGCTTCT
ATTTTAGAATTTCATCACAATACTGCTATTTTGAATTTTTTCTTTTGATT
TTGATTATTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTTTGTCC
GTCCGTCCGTCTGTCCGTCCGTCCGTCCGTCCGTCTGTCCGTCCGTTAGT
TTCCAGCTTTTCTCATGATTGGCTCATTAGTTTTTTGCACAATGATGCAA
AATGGCAATGCCCAAAATATGACGGAGCCCGATTTTCGAAAAAAAATTTT
TTGGGGCAAATTTGGGCCAAAAAACAGCTAAAAAACGGGTTTTTTGGCTT
TTGTGAAAAATTGGATCATTAATTTTTTCTGATTTTTTGCACGAAAGTAG
GGTACCATCATAGGTATAAGATGGCTCAAGCAGATTTTTGCAAAAAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAAATTCGATATATTTTTA
TAAGCACATTATCAATTACTTAGGCATTGGCTTTTCTCGAGATTGGCTCT
TTCATTCTTTATGATTTTTTACACAAAGATGCCTAACTATAAACCCTTGA
ATGTGACAGAACCGGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTAGG
CCAAAAAACGGCTAAAAAACGGGTTTTTTGGACTTTGTGAAAAATTGGAT
CATTAATTTTTTCTAATTTTTTGCATAAAAGAAGGGTACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTACTTA
GGCATTGGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTAC
ACAAAGATGCATAACTATAAACCCTTGAATGTGACAGAACCGGATTTTCG
AAAAAAAATGTTTTAGGGCAAATTTAGGCCAAAAAACGGCTAAAAAATGG
GTTTTTTGGACTTTGTGAAAAATTGGATCATTAATTTTTTCTAATTTTTT
GCACAAAAGAAGGGTACCATCATAGATAAAAGATGGCTTAAGCAGATTTT
TGCAAAAAAAAATTTGTTGGCTCAAAAAAAGCATGTTTATCTATAAGAAT
CACTAATAAGCATACATCAATGTTCTCAGTCAAATTACTGAATTTTTTTA
TGATATAGATGTTTTTTTTTCTCACGAGTGTTTAGACAGGAAATTTTGGT
TGTTTGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAATATTGGACCATTGTTTTTTTTCTGATTTTTTGTAT
GAAAGTAGATAAAAGATGGCTCAAGCAGACTTTTGTAAAAAATGAATTTT
TCAGCTCAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTATAAGAAACAAAC
GACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAAT
GGTCACGTCACGTAGATATCAATTATAGGTCCATCAAAGTATCACTTGTT
ATTTGTGAATTTAAATTGTTTTTTCTACAGAGGTGAAAGAATTACAATCT
CACTTTGAAGCAAAGATTTACCGTATATCACGCACAAAGAAAGATGTAGA
AATGTATCGAGACGGGGGTATTGCTATCATGGACCAATGGATTGCTGCTC
ATGGCAGGTATGGAAAGAATGGAAATCTGTTTAAGAACCGCAGTAATTTT
TTGTCGAGCCTTATCCGTTCCTCAAATTTGTTCTTATCCTGCTCTTAATT
TTAGGGTAATATTGAGGTATTTTGGGCTTTTTTCAACTTTGACTTTTTAT
TTTATTCAGTCATTCCAGCCTCAGCTACGTTCTCAAAATTTAATTTCCTT
TGACGTTTTTGAGCCTCCATTTTCTTATAAAATTGTTCTTATTAAAAAAG
AGTGTTTATGTCTATATCCTTTTGGGGTCATTCGACGGAAGCCCTAATTA
TTATATATTTCGAGAAAAATCAGGTTACTTTTTTTCAAACTCACAGCTTT
TGACCAAAAGTTTAAACTTTTTTAGAGGGTGGTAAACGCGAAATTTTCAT
TTTTGCTTGGATTTTCTCCGGAAATGAAATTACCATATCATATAACACAT
AACACATTTTTAACCTCGTTTTCAGGTATTTCATTGGCACATGTTCATCT
ACATTTTCATTTCGTATTTATGAAGAACGAGATATCTTAGGATTTGACCC
TAAAACAACGTACAATTGTATTTGTGGTCAACAAGCACCAAAAGACCGTT
GTGAACAGCCTGGTGGATGGAGAGTCAAATTCGGTTAAATCTGAATAATT
GATTATCAATTTTTGTTCCTTAACACTTTTTTCAGACAATATTCAGGTTC
TATTGAATTATTTACATTTTTTGGAACTTTTGGAAAAATTAGTTCACAAT
ATTTACAAAGGCTTTAAANGATTTGACCCTAAAACAACGTACAATTGTAT
TTGTGGTCAACAAGCACCAAAAGACCGTTGTGAACAGCCTGGTGGATGGA
GAGTCAAATTCGGTTAAATCTGAATAATTGATTATCAATTTTTGTTCCTT
AACACTTTTTTCAGACAATATTCAGGTTCTATTGAATTATTTTCATTTTT
TGGAACTTTTGGAAAAATTAGTTCACAATATTTACAAAGGCTTTAAATTT
TATTATTTTTTATTATTTTAATATTTATTATTTTAATTATTTTTGTTTAT
TCAACTCTTTTTATTCAGGTTTTATTGGACGGTTAAAATTGAATCATTTG
CTTTTTAAGTTAAGGATCGATACTTCTTCGCAAATTCAGTTTTTACAAAA
TGTTAACAATCTTCAATATTTTCCAAATTTCAATGTACTTTCAAGTCAGG
TATTCAAAGTAGTTATAATTGAATTTTCATTGAATTGTTCATTTCAGTAT
TTTGTCATTGATATTCATCGTCGTTATTTTCCTTACTTAACTTGATGGGA
TAAACTTTTGCAGGGATCAAATTTCCTGGTTGACCTTATCTTCGAAATGT
TAAGATTCCGTGGGGACTTAATTTTTTATAAACATTTCGCGGATAAGGCC
TTTCCAAATTTCCATTGAGACTTAATTTCACGGATGACATCCAAATTCGT
GAAATGTTATCCAATTAAAGTAGCTTTCCATAACTTGTCGTGAAGAATTT
GTTAACATTCAATAGCAGATGTTTGTTATAGAAAAATTCCATGTTAAATT
TTTACATTCGGTGAGAAATTTTACAAGATTTTTTAAGTAAATTCCATTCG
TGAGATACCTCGTATAAAGAAATACAGTAGCAAGGGATGTTACCTTTTTT
TATTTTGAGAAATAAGATACATGATAGCGTTTTAAAATTTTATTCAGTAA
TAGAATGGTGCTTGGATAATGACTTTTATATAGAAATAATTTTATACTTC
AACTTAACTTTAATTAGCGTATACAAAATTTTGATAGTTACAATTTTCGT
TAGTCCTCACTAGGAATATTTTAGTAGCAATTTTTGACATAGGGTGAATT
TTCTTATTTATTTTTTTGTATCTTATTTATTAGCACAATAATAAATTTCA
AAGATACAAATATAGTATTCTAAAATAAC

Coding sequence (CDS) from alignment at sc0000021:151363..162291-

>TCONS_00002662 ID=TCONS_00002662|Name=TCONS_00002662|organism=Clytia hemisphaerica|type=CDS|length=1311bp|location=Sequence derived from alignment at sc0000021:151363..162291- (Clytia hemisphaerica)
ATGGCGGCTAAAATCAAGGCAATCGTTTCTCTTTTTATGGTAATATTCTT
CACAAATACTCACTCTGAAGATGTATCTTTTGCTTTTGGTAAGAACACTT
TACATGTGACTTCTCAGACTCACAATATAACTGAAAATACAAGATATATT
ATGCACGATGTCAACCCTGGGGAGGGATTTAACCTAAGACGTGATGTTTA
CATTCGAATTGCAAATCTTGTAAAAAGACTCAATGAAGAAGAAAATCAAC
ACTGGATTCTTGTTCTTGCTCCTTGGAAGCATCTGTACCATTGGCAGAAC
AGATATTTGGATCAAAACGGTGAACCATGGTCAAACTTTTTTGACGTAGC
AAGCCTGAATCGCTATGTTCCAGTTATGGAATTTGACGATTTTTTACAAA
TAACTGGATCAAGTTCAATAGATCTTGTCATGTATCTTCAACGTCATCCA
GATGGCTTTTCAGGAGGTTGGAAAGAAATGTGTGAAGTTGGAAAGTGTGG
TGATAGAATTCCTTTTTCAAAGCAAGGGAACAAGTGGAGATCCAATTTTT
GGGGGCATCATGAAGTTGTTGCGCAAGATTTAGATTGCTATGATGTGCAA
GGACACGCAACCATCCTCATTGACACCTTAAAGAAAGTTAAAGCAAGATC
AATTCTGGTTGACAGATTTGAACAAGTTCTTCATACTGACTATGGCAGTG
TTGAATTTTACAAGGCACGAAGAAGTCTGGTTTTTGCTCAACATTTGCGT
GAAGTTGCCGACAAATTTCGTGAGAAGAAATTAAAATCAACTGATGATAA
AGATAAAACACCTTACGCAGATGACTGGAGAAAGCAAATGCCTGAAGACG
GATCGGCCCTCGGCGGACCCTATTTATCACTCCACATGAGGCGTGGTGAT
TTCACGTATGCTCATCAAGAGACTGTTCCTTCCATTGAGGAGATTGGTAC
CGAGGTTACGAAACAGTTGAAAAAATACAAACTGAAGAAGGTGTACTTGG
CTACCGACGGTACTGATGAAGAGGTGAAAGAATTACAATCTCACTTTGAA
GCAAAGATTTACCGTATATCACGCACAAAGAAAGATGTAGAAATGTATCG
AGACGGGGGTATTGCTATCATGGACCAATGGATTGCTGCTCATGGCAGGT
ATTTCATTGGCACATGTTCATCTACATTTTCATTTCGTATTTATGAAGAA
CGAGATATCTTAGGATTTGACCCTAAAACAACGTACAATTGTATTTGTGG
TCAACAAGCACCAAAAGACCGTTGTGAACAGCCTGGTGGATGGAGAGTCA
AATTCGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001442XLOC_001442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002662-exon-sc0000021-1575043694:161489..162291TCONS_00002662-exon-sc0000021-1575043694:161489..162291Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1575043694:157700..157766TCONS_00002662-exon-sc0000021-1575043694:157700..157766Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1575043694:156906..157212TCONS_00002662-exon-sc0000021-1575043694:156906..157212Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1575043694:153285..153411TCONS_00002662-exon-sc0000021-1575043694:153285..153411Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1575043694:152525..152816TCONS_00002662-exon-sc0000021-1575043694:152525..152816Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1575043694:151363..152134TCONS_00002662-exon-sc0000021-1575043694:151363..152134Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1510915933:161489..162291TCONS_00002662-exon-sc0000021-1510915933:161489..162291Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1510915933:157700..157766TCONS_00002662-exon-sc0000021-1510915933:157700..157766Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1510915933:156906..157212TCONS_00002662-exon-sc0000021-1510915933:156906..157212Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1510915933:153285..153411TCONS_00002662-exon-sc0000021-1510915933:153285..153411Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1510915933:152525..152816TCONS_00002662-exon-sc0000021-1510915933:152525..152816Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1510915933:151363..152134TCONS_00002662-exon-sc0000021-1510915933:151363..152134Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1491911889:161489..162291TCONS_00002662-exon-sc0000021-1491911889:161489..162291Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1491911889:157700..157766TCONS_00002662-exon-sc0000021-1491911889:157700..157766Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1491911889:156906..157212TCONS_00002662-exon-sc0000021-1491911889:156906..157212Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1491911889:153285..153411TCONS_00002662-exon-sc0000021-1491911889:153285..153411Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1491911889:152525..152816TCONS_00002662-exon-sc0000021-1491911889:152525..152816Clytia hemisphaericaexon
TCONS_00002662-exon-sc0000021-1491911889:151363..152134TCONS_00002662-exon-sc0000021-1491911889:151363..152134Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002662-proteinTCONS_00002662-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:151363..162291 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9683	14.6598	13.9008	13.9474	25.119	22.3903	18.6019	20.0739	19.4455	19.4487	13.8804	14.1637	7.18996	4.14104	9.80697	8.20648	9.8803	8.99133	3.25308	5.30935	7.02649	6.84102	12.7265	11.2245	4.66265	3.81061	7.89607	6.68999	5.84808	5.73575
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019378GDP-Fuc_O-FucTrfase
Blast
[Close]
BLAST of TCONS_00002662 vs. Swiss-Prot (Human)
Match: OFUT2 (GDP-fucose protein O-fucosyltransferase 2 OS=Homo sapiens GN=POFUT2 PE=1 SV=3)

HSP 1 Score: 349.362 bits (895), Expect = 3.038e-111
Identity = 186/391 (47.57%), Postives = 267/391 (68.29%), Query Frame = 1 
Query:  298 RYIMHDVNPGEGFNLRRDVYIRIANLVKRLNEEENQHWILVLAPWKHLYHWQNRYLDQNGEPWSNFFDVASLNRYVPVMEFDDFLQITGSSSIDLVMYLQRHPDGFS-GGWKEMCEVGKCGDRIPFSKQGNKW-RSNFWGHHEVVAQDLDCYDVQGHATILIDTL-KKVKARSILVDRFEQVLHTDYGSVEFYKARRSLVFAQHLREVADKFREXXXXXXXXXXXXPYADDWRKQMPEDGSALGGPYLSLHMRRGDFTYAHQETVPSIEEIGTEVTXXXXXXXXXXXXXATDGTDEEVKELQSHFEAKIYRISRTKKDVEMYRDGGIAIMDQWIAAHGRYFIGTCSSTFSFRIYEERDILGFDPKTTYNCICGQQAPKDRCEQPGGWRVKF 1461
            RY+++DVNP EGFNLRRDVYIRIA+L+K L + E   W+LVL PW  LYHWQ+  + Q   PWS FFD+ SLN+ +PV+E++ F+  +G   ID V  LQ + +G+  G W+E  +   C D++ +S+  +++ R  FWG+ E    ++ C  VQG A+I+   L +   ARS+++DR E +LH  YG  E++  RRS+VFA+HLREV D+FR + L STDD D+ P+ +DW K   + GSALGGPYL +H+RR DF + H++ VPS+E    ++   +K ++L KV++ATD   +E +EL+     ++ R   T +++E+Y+DGG+AI+DQWI AH R+FIGT  STFSFRI+EER+ILG DPKTTYN  CG Q  +  CEQP  W++ +
Sbjct:   44 RYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEE--WVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLL-PEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQ--EKACEQPTHWKITY 429
The following BLAST results are available for this feature:
BLAST of TCONS_00002662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OFUT23.038e-11147.57GDP-fucose protein O-fucosyltransferase 2 OS=Homo ... [more]
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