TCONS_00002668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002668
Unique NameTCONS_00002668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002668 ID=TCONS_00002668|Name=TCONS_00002668|organism=Clytia hemisphaerica|type=transcript|length=3616bp
gcaaaaaataagaaaaaaacaaaaaatatcaaaatatgtttgaaGGGAAA
AACATACACTTATCACCGATCGATGGCAAACCATTATGCAGTTTCAGCAA
GAAGCTTTGTCGACAAAGACGTCTTCATAATTACGCGTTTTGTATACGGC
ATATTTTGGAAGATACTGATTCACCTTTCAAACAATGTCCTTATCAAACG
AAGTCAGGAGATATTTGTATCAACGCTGTACCTGTTGCTGCTGCAAGAGA
ATATTGCAATAAGCATATGCTCATAATGGGGCTACAACCAAAGACTACCA
AAACTCAAATAGACAAGAAACCTGTTACTACTACAGTTAAGAAAGCATGT
TCCAAGACTATCAAGAGTAAAATCTCCACAAATAGCagtaaaaaagtgat
gcatttgATGGAAACacttcaaaaagaagatgcaACGAAAAGTACGCATG
CGCGTAAAAGACAAAAATCATATGACCGTTATTTGTCAATGTCGGTGATG
AGGCGTCATATTTGGAGCAAACAACCTCGCTCTGACGTCATGAAAGAATT
GATTGAAAACAAGAAGTATTTTAgaaagacaaagaagaagaagatgctGA
CTAGCTACACCCTGGGAACATCCGAAGATGAAAGTGACAGCTTCATTGAA
TCATTTCAACAACAATGTGATGACAATGGCAGTCATAATTCATCAGCTGA
GAAGTTATTGACTCAACTGAAACACCAACATGTTCAACTACAAAACATtg
tcaaagaaaaaatgaaaagtactTCACTCTCGTATTCAGTGCTCTCAACT
CTGGTTACAGCAAGTCGTGAGAATGTTACAGAAACGGCAAACATTCTTAC
TAACGGTAACTCgaaaaacaaagtttatcaCCAAAAAGAAGAATCAATTA
CTACAAAAATTCCATGCTGTATGGTTACTGGTAGTACGCGTTGCTCACAA
ATGGCTCTACCGTTTTCTAGATATTGTCGTAACCATATAAACGAAGATAC
TGACCAATTGCTTTTCGTTCCGAAGAACATTGCATCATTGCAACGAAGTG
ATATGCCCGGCCTTAAGATCTTCAGACCTGACCTCTTGACAAAGGGGCTA
AAAGCGAGTTCTTCTCTCAAAGCGAAACGAAAAGTGTGTCGAAAAAGCAA
CCGGAAAAGAAAAGGAGCTCAAAAGAAAACACCGAAGAAACCAAGCAAAC
CCAAAACCATAGCTATCCAAGCTTCTTCGCAATCGAGTCAAGAAACAACC
TCGGAGATTGATTTATCTGACGTTCAACACCCGGATAACCTATCTATCGG
AACACCACCCATATTGAGTGAATCAAGTAGTAGCTACACTGAGAGCGATT
CTGAGTCAGATATTTTAACACCGGAAGAAGCATTCCGTCTACCGCCCGGT
AGTCTGTCCTATCCGCCTGGTTTGGACGATGAAGACTCCCTTACTGGGAT
GCATCACACAGCCCGGGCATGCAATATAGCAGACGAGGAGGATGAGTTAA
TGAGATGCGGATCCAACTTCTCAATGGATAACGAAAAACAAGACATGATA
ACACGTGAATTATCTTCACCCACATTGAATCAGTTCTCGGAATTCGACCA
ATCACTGTTCGGTGCTGCCACCGCTTTTTCACCAACATCCGGCAGTGACG
TCACATTACCTCATACGTCATCTTTGACTTCACCAAACCAAGAAATAACA
CCCTTGTCAGCCTCTTTTGGAACCAAtccaaaatattcttcaaagaaTCC
ATCACCCTTAAAAAATCATACAAATTCTCACACAGGGCACGGTTCAGTCA
CGACTCTCAAAATCACACCCTTAAACATGTCACCTCGTAAAGCACCGTCT
AAACTCAACGTTAGACCACCACTTTTGACATCACAATCCATGGTCAAACC
TCCCTTAGTTAGCAATACTTTCACACAAAGCTCGTCAACTAAAGATGAAT
CTTGGAATAAACAATATATGCAGATTGATAATTTTGGCGATCCAGATCTT
TTGAATGACATTGCCATGGATGATGAAGAAACTCCATTAGAGAAAGTCAA
TcctgatattttcttttcatcAGCTTTTCCAGTTACTACCACCGCATCTA
ATGATTAGTATGTTATTTTCCAGAAATACATTAGAACCCTGTGtgacagc
cccggtgaaactctTTCTTACatcggggataaaaatttcgatcgaaatct
caatgggcttttccagaaaaaaatttgaaggaggtcataacattttttgg
aaatttaccccccggacaaggcaggttttatagatttttcactacccccg
NAAATTAGAAATAGAAGTTTTATTGTtccatgttaaaaaaattcactttt
cacaTTTTAAAAGGGGATGAAATGAATGTCAGAAGTCTCACCGGGTCTGT
GATTTGGATTCAGTAACATACGTACACAAGAATGTTTTTTGCCTAGGAAC
AACAGCAAAATGAATAAATATTGACTTGCGTATTTTCGAAGGTAGAACTA
CTACGGTACCACATAtatctactttcatgcaaaaacaTTGTAATGATGTG
AAAATACTTATCATATTGCCTGCTGAAGTCAAGTCAAGACTTGAGAAATG
ATTCAGCTCGTACATTATACTTTGATTTTACTTCGAGTAACTTAACTTTG
TCAATTGACGCTGAATGAGGAATGCCAGTAGGTTTCGAATTTGTAAGATT
TTCTGCTAGAAGAAGTAAGTTTATATTATCCTCTTTTTTGGTAAAGTTAT
GAAATGCCTAAAATAAATGAcctaatattaaaaaaaatcaacatttttca
aaattaaagtgtTTGTGTATGACATAAGCGGAAGTAAATtgggtacattg
atttctacaTATTTTGCATTGGTTTTAATTCgatattaattttgatttga
gaTACATCCTGTACACAACCAACACGTTTTCTAGAACCTTTCTTTTTCTT
AAACGACCGGTCTCGATCATTAACTGGTTTATCCGACAAACATAATAATC
GAGCAAAAGCCGCCCTATACCTCCCACTCGTCAATGCGTAAACGGGCGGA
TTAACCGCTGGGTTAGCGTAAGCTAACATTAAGGAAACTTTTATAGCGAC
TAATGGTACGATCGGTTCATCGCTTAACGTATCGACGACGTCAATGGTAG
CTATCGGCATCAGGAGAACCGTGAACAGGAAAACAATGATACAAACACCT
TTAGCGAGTTTCACTTCACGAGTTATTGTTTTCACTAAATGTACACCACG
GGATTCCTTACGTGATCCGTTCCCGTTCCCGTTACGAGTTGTCGGAGACC
GATCGTTGAGTTGAGTCTCAGATCGTAAGCGACTGTTCCGAGAGCTGTAA
AGTCGTTGTAGAATAACCACATACATTATAAACATCAGTAAACATAGCGT
GAAAAATGATCCGAATTCGATGAACAGTACATAGCTAGGACATAAAACAG
TCGAGAAGGTACAAACATGTATTCGATCGCTACCCAAACTGTCTTTGTCA
CCGATGATGATAAATGGAAATGTCGCAATCACCAGAGCATACAACCATGA
TAAAATAACAGCTATCAAAAGTTTACGTTTAGTCATCAAGCCTCTATACC
GTAACGGAAATGTGAT
Run BLAST on NCBI

protein sequence of TCONS_00002668-protein

>TCONS_00002668-protein ID=TCONS_00002668-protein|Name=TCONS_00002668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=690bp
MFEGKNIHLSPIDGKPLCSFSKKLCRQRRLHNYAFCIRHILEDTDSPFKQ
CPYQTKSGDICINAVPVAAAREYCNKHMLIMGLQPKTTKTQIDKKPVTTT
VKKACSKTIKSKISTNSSKKVMHLMETLQKEDATKSTHARKRQKSYDRYL
SMSVMRRHIWSKQPRSDVMKELIENKKYFRKTKKKKMLTSYTLGTSEDES
DSFIESFQQQCDDNGSHNSSAEKLLTQLKHQHVQLQNIVKEKMKSTSLSY
SVLSTLVTASRENVTETANILTNGNSKNKVYHQKEESITTKIPCCMVTGS
TRCSQMALPFSRYCRNHINEDTDQLLFVPKNIASLQRSDMPGLKIFRPDL
LTKGLKASSSLKAKRKVCRKSNRKRKGAQKKTPKKPSKPKTIAIQASSQS
SQETTSEIDLSDVQHPDNLSIGTPPILSESSSSYTESDSESDILTPEEAF
RLPPGSLSYPPGLDDEDSLTGMHHTARACNIADEEDELMRCGSNFSMDNE
KQDMITRELSSPTLNQFSEFDQSLFGAATAFSPTSGSDVTLPHTSSLTSP
NQEITPLSASFGTNPKYSSKNPSPLKNHTNSHTGHGSVTTLKITPLNMSP
RKAPSKLNVRPPLLTSQSMVKPPLVSNTFTQSSSTKDESWNKQYMQIDNF
GDPDLLNDIAMDDEETPLEKVNPDIFFSSAFPVTTTASND
Run BLAST on NCBI

transcript from alignment at sc0000021:264065..271818-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002668 ID=TCONS_00002668|Name=TCONS_00002668|organism=Clytia hemisphaerica|type=transcript|length=7754bp|location=Sequence derived from alignment at sc0000021:264065..271818- (Clytia hemisphaerica)
GCAAAAAATAAGAAAAAAACAAAAAATATCAAAATATGTTTGAAGGGAAA
AACATACACTTATCACCGATCGATGGCAAACCATTATGCAGTTTCAGCAA
GAAGCTTTGTCGACAAAGACGTCTTCATAATTACGCGTTTTGTATACGGC
ATATTTTGGAAGATACTGATTCACCTTTCAAACAATGTCCTTATCAAACG
AAGTCAGGAGATATTTGTATCAACGCTGTACCTGTTGCTGCTGCAAGAGA
GTATGTCTATTTTGCTATTCATTTGATCTTTATACGCCTGACAGTGCCAG
TATTGATTTTTTTTTGTTATTACAGTGAAGTCTCTATAACTCGAACACGC
ACGGGGAAAACAAATCTTTTTCGAATTATGGAGTAAGGCTTATAAGGCAT
TGTTAACTGAAGTGACCAAACCTGTAAAACCTGTTCGAGTTAAAGAGACA
TTAGAGTATGGGTTCGAATTAAAGAGGTTCCACAGTATAAGAACTTTGCC
TAAAGAAGGTCACCCTTGCGTTTGATAATTCGGGAATTTTAGATTTCGTA
GCAATACTTTATTGATTGTTCTCTTTTGATATTCATCTATTTAGATATTG
CAATAAGCATATGCTCATAATGGGGCTACAACCAAAGACTACCAAAACTC
AAATAGACAAGAAACCTGTTACTACTACAGTTAAGAAAGCATGTTCCAAG
ACTATCAAGAGTAAAATCTCCACAAATAGCAGTAAAAAAGTGATGCATTT
GATGGAAACACTTCAAAAAGAAGATGCAACGAAAAGTACGCATGCGCGTA
AAAGACAAAAATCATATGACCGTTATTTGTCAATGTCGGTGATGAGGCGT
CATATTTGGAGCAAACAACCTCGCTCTGACGTCATGAAAGAATTGATTGA
AAACAAGAAGTATTTTAGAAAGACAAAGAAGAAGAAGATGCTGACTAGCT
ACAGTAAGAACTTGTATTCGGTAAACTGATACTTGCTATTGTTTTACTCT
AGATTGATATTATTTATTCCACAATATTGTTTTTATGCCTTCGGCTATTG
TCGGCTAAGGATCCTTATATACGCTAGAGGTGACCTCTCAGAGTTGAATC
TTTTCAATGTGTTTTATTGGTTTTGGGAGTATGTATTTGTTTGCACGCGT
AATTCATCGATAAAGCCGTGCTTGTGTACTTCATAACGATAAAGGTTGGA
AAAGGAACGCAGTGGTTGGTTAACTATTAAGTGCCACTGAACTCATGTGA
GGTCCGCTCGAAATTTCGGTTCTGCACCTGTGCCGGTAAGTCTTGAGCCT
AGGAGCGCTGCGCTGCGACGGCATTTTCTTAGTAAAGGTGATGATAATTT
AATGGGTTAATGTTATTTTTGAAAAGTCTTTTTTCTCTTTTCATTTCAGC
CCTGGGAACATCCGAAGATGAAAGTGACAGCTTCATTGAATCATTTCAAC
AACAATGTGATGACAATGGCAGGTAATAAACTCTCTCTAGAAGCCCTGCA
ATGTATTTCTTTTACTATGGTAAAGTTTCATATGAAAATTATTAATCGAG
CAATCTTTCGCAGAACTCGAATTTACGAGAAACTCTGGGATTTCGTCCTA
ATGTCCATGTGTTGTGGGGAAAGCAACGAAACTTTTAATGTGTAAGATAA
TCGAAGATTCCAGGTCAATCGTATTGCTAATTTTTTATCGATTTGCTTTA
CAATTTTTTCTGCAAACAGACAAAATATTCCTCTGAGTCTCTGTTACTCT
AATCCTTAGTTCAACAACACACAATAGCTTTATTTTCATTTTCAATTTGA
CAAATAAGATCTTTAAAAATGATGTTGACAAAATAATGATCTTCTTATCT
CCTCTGGTCACGTTTTTCAGTCATAATTCATCAGCTGAGAAGTTATTGAC
TCAACTGAAACACCAACATGTTCAACTACAAAACATTGTCAAAGAAAAAA
TGAAAAGTACTTCACTCTCGTATTCAGTGCTCTCAACTCTGGTTACAGCA
AGTCGTGAGAATGTTACAGAAACGGCAAACATTCTTACTAACGGTAACTC
GAAAAACAAAGTTTATCAGTAAGTATATTATAAAGTGTAGTTAATGGAAA
AATATACCGTATTTCCTCACAATACACGCTTTTTTTATAAGAATAACTTC
TATAAGAATATCAGGGTGAAATTTTAGAGTTAGAACAATAGGTCTATTGT
TTAGAACAATAGAAAAATAAGAATAATGCTCACCCGCAGCCAAAGTACAC
TATTCTTATTTAAAAAAAGCGTGTAAGCGCCGCAGCACCTATTTTTTTCT
TGTGGTTTTAGGTGGGGCACTTGATAGAGGGAGACGCTTAATTCGAATTT
GAGTTTCATCTATTTCTATGAATTTGATCGATTCATGGGTTAATATCCTT
ATATTAGAGAAGTTTTTCTCACTATAAAATCCAGGGACCCTAACAGGAGT
TACTGACGTATGACTAAAATCGGCGGATCTGTGATCATTTTTCTTGATTT
TCTAATAAACTCCTTATGCAATAAAAATAAGAACAATAGCCCTTCATCCA
AATTTAATGATTCTTATGAAAAAGAGAGTAGAGACAAAATGCTATTATCA
TTTTTGTGTTCACATCTCAACATCCGGTCGGAATTTACTTCATAACTCGA
ACGTCAACGCTCTTCAATCATCAATCGATTGATCTTTTTTGAATTTTTTG
ATAATATAATGTGAGTTTTATGAAAACATTGTTAACCCTCACTTAGTATT
ATGCCATTTTACATATTACCATTTTACCAAAGATTTCCAAAATGGTACTT
GATGCCTCTCTGCTTGAGGCTCAGCAATTAAGAGAAGGATCAAGGGTAAA
TGGAGCAATCCAGGGGAAAAGAGTGGCCCCCTCCCCTACCTTCGGGTAGA
TAGCTATCGAAAGAGGAGCCTTCGGGTCGCCTCTGACTGCGGTTGCAGAC
TTACCTACTTATTATGCCATTTTACACTTATTTCTTTACTCGTACTCCCA
GCCAAAAAGAAGAATCAATTACTACAAANTTAGCTTTATTTTCATTTTCA
ATTTGACAAATAAGATCTTGAAAAATGATGTTGACAAAATAATGATATTC
TTATCTCCTCTGGTCACGTTTTTCAGTCATAATTCATCAGCTGAGAAGTT
ATTGACTCAACTGAAACACCAACATGTTCAACTACAAAACATTGTCAAAG
AAAAAATGAAAAGTACTTCACTCTCGTATTCAGTGCTCTCAACTCTGGTT
ACAGCAAGTCGTGAGAATGTTACAGAAACGGCAAACATTCTTACTAACGG
TAACTCGAAAAACAAAGTTTATCAGTAAGTATATTATAAAGTGTAGTTAA
TGGAAAAATATACCGTATTTCCTCACAATACACGCTTTTTTTATAAGAAT
AACTTCTATAAGAATATCAGGGTGAAATTTTAGAGTTAGAACAATAGGTC
TATTGTTTAGAACAATAGAAAAATAAGAATAATGCTCACCCGCAGCCAAA
GTACACTATTCTTATTTAAAAAAAGCGTGTAAGCGCCGCAGCACCTATTT
TTTTCTTGTGGTTTTAGGTGGGGCACTTGATAGAGGGAGACGCTTAATTC
GAATTTGAGTTTCATCTATTTCTATGAATTTGATCGATTCATGGGTTAAT
ATCCTTATATTAGAGAAGTTTTTCTCACTATAAAATCCAGGGACCCTAAC
AGGAGTTACTGACGTATGACTAAAATCGGCGGATCTGTGATCATTTTTCT
TGATTTTCTAATAAACTCCTTATGCAACAAAAAAAAGAACAATAGCCCTT
CATCCAAATTTAATGATTCTTATGAAAAAGAGAGTAGAGACAAAATGCTA
TTATCATTTTTGTGTTCACATCGATCTCAACATCCGGTCGGAATTTACTT
CATAACTCGAACGTCAACGTTCTTCAATCATCAATCGAATCTTTTTTGAA
TTTTTTGATAATATAATGTGAGTTTTATGAAAACATTGTTAACCCTCACT
TAGTATTATGCCATTTTACATATTACCATTTTACCAAAGATTTCCAAAAT
GGTACTTGATGCCTCTCTGCTTGAGGCTCAGCAATTAAGAGAAGGATCAA
GGGTAAATGGAGCAATCCAGGGGAAAAGAGTGGCGCCCTCCCCTACCTTC
GGGTAGATAGCTATCGAAAGAGGAGCCTTCGGGTCGCCCCTGGCTGCGGT
TGCAGACTTACCTACTTATTATGCCATTTTACACTTATTTCTTTACTCGT
ACTCCCAGCCAAAAAGAAGAATCAATTACTACAAAAATTCCATGCTGTAT
GGTTACTGGTAGTACGCGTTGCTCACAAATGGCTCTACCGTTTTCTAGAT
ATTGTCGTAACCGTATCCTTTTCACTTGTGATTTGTAACCCTTTGAGATT
TTTGGGCTGTGTCTCTTCTATCTGAGCAACTTTTTATAAAGTCAAGATAT
TCAAATTTTTCAATTAAAGCAAGTAAAACAATTAGAATTTAAACGTAAAA
TTGTATTATAAAACAGCCTTAAAGGTTTTGTTTTTACATAAGTGTTCTCG
TTTCATATCAGACACATATTTCATGTCGGGACAGTGTCTGCCTATTGTTT
TATTATGCTTATATAAGCAAAAAATGTTTTTCTTTTCCTCTTTTTGACCA
ATCTTGCTCCACATCCGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAA
AATTGATGAGTAAGCAAACGATATCACTCGTATTTAAAAACAAAATCTAT
AATTTAAATTTGAATTTTGAATTTAAAGCATCTTCTCATGTAATCTAAAG
AGTCTGATAATGGAATCTCAGTGAAACAACATCATGACTTTTCCTTGACA
ATATTATCACCACTACTACCACAACCAGATATAAACGAAGATACTGACCA
ATTGCTTTTCGTTCCGAAGAACATTGCATCATTGCAACGAAGTGATATGC
CCGGCCTTAAGATCTTCAGACCTGACCTCTTGACAAAGGTATTATTTTCT
AGCAGTGCTTTTTTAAACATTAACTCTTGTTCACACTTAAGGCTACCATT
CTCTTTTAAACCAAAGATTCGAAACTGAATCGTTTCCACAAGTTTCATAA
ATTCAAAACTGGTGACAAACGCCCGATGCTTTTCGGGTGTTTCTGCAAAA
AAAGATAACCTCATTAATATCAAGAATTGTTTTAGGTTTCTTTGCTTTGA
TTGACATTGCTTATTCTATTTCTGCGTCATAGGGGCTAAAAGCGAGTTCT
TCTCTCAAAGCGAAACGAAAAGTGTGTCGAAAAAGCAACCGGAAAAGAAA
AGGAGCTCAAAAGAAAACACCGAAGAAACCAAGCAAACCCAAAACCATAG
CTATCCAAGCTTCTTCGCAATCGAGTCAAGAAACAACCTCGGAGATTGAT
TTATCTGACGTTCAACACCCGGATAACCTATCTATCGGAACACCACCCAT
ATTGAGTGAATCAAGTAGTAGCTACACTGAGAGCGATTCTGAGTCAGATA
TTTTAACACCGGAAGAAGCATTCCGTCTACCGCCCGGTAGTCTGTCCTAT
CCGCCTGGTTTGGACGATGAAGACTCCCTTACTGGGATGCATCACACAGC
CCGGGCATGCAATATAGCAGACGAGGAGGATGAGTTAATGAGATGCGGAT
CCAACTTCTCAATGGATAACGAAAAACAAGACATGATAACACGTGAATTA
TCTTCACCCACATTGAATCAGTTCTCGGAATTCGACCAATCACTGTTCGG
TGCTGCCACCGCTTTTTCACCAACATCCGGCAGTGACGTCACATTACCTC
ATACGTCATCTTTGACTTCACCAAACCAAGAAATAACACCCTTGTCAGCC
TCTTTTGGAACCAATCCAAAATATTCTTCAAAGAATCCATCACCCTTAAA
AAATCATACAAATTCTCACACAGGGCACGGTTCAGTCACGACTCTCAAAA
TCACACCCTTAAACATGTCACCTCGTAAAGCACCGTCTAAACTCAACGTT
AGACCACCACTTTTGACATCACAATCCATGGTCAAACCTCCCTTAGTTAG
CAATACTTTCACACAAAGCTCGTCAACTAAAGATGAATCTTGGAATAAAC
AATATATGCAGATTGATAATTTTGGCGATCCAGATCTTTTGAATGACATT
GCCATGGATGATGAAGAAACTCCATTAGAGAAAGTCAATCCTGATATTTT
CTTTTCATCAGCTTTTCCAGTTACTACCACCGCATCTAATGATTAGTATG
TTATTTTCCAGAAATACATTAGAACCCTGTGTGACAGCCCCGGTGAAACT
CTTTCTTACATCGGGGATAAAAATTTCGATCGAAATCTCAATGGGCTTTT
CCAGAAAAAAATTTGAAGGAGGTCATAACATTTTTTGGAAATTTACCCCC
CGGACAAGGCAGGTTTTATAGATTTTTCACTACCCCCGNAAATTAGAAAT
AGAAGTTTTATTGTTCCATGTTAAAAAAATTCACTTTTCACATTTTAAAA
GGGGATGAAATGAATGTCAGAAGTCTCACCGGGTCTGTGATTTGGATTCA
GTAACATACGTACACAAGAATGTTTTTTGCCTAGGAACAACAGCAAAATG
AATAAATATTGACTTGCGTATTTTCGAAGGTAGAACTACTACGGTACCAC
ATATATCTACTTTCATGCAAAAACATTGTAATGATGTGAAAATACTTATC
ATATTGCCTGCTGAAGTCAAGTCAAGACTTGAGAAATGATTCAGCTCGTA
CATTATACTTTGATTTTACTTCGAGTAACTTAACTTTGTCAATTGACGCT
GAATGAGGAATGCCAGTAGGTTTCGAATTTGTAAGATTTTCTGCTAGAAG
AAGTAAGTTTATATTATCCTCTTTTTTGGTAAAGTTATGAAATGCCTAAA
ATAAATGACCTAATATTAAAAAAAATCAACATTTTTCAAAATTAAAGTGT
TTGTGTATGACATAAGCGGAAGTAAATTGGGTACATTGATTTCTACATAT
TTTGCATTGGTTTTAATTCGATATTAATTTTGATTTGAGATACATCCTGT
ACACAACCAACACGTTTTCTAGAACCTTTCTTTTTCTTAAACGACCGGTC
TCGATCATTAACTGGTTTATCCGACAAACATAATAATCGAGCAAAAGCCG
CCCTATACCTCCCACTCGTCAATGCGTAAACGGGCGGATTAACCGCTGGG
TTAGCGTAAGCTAACATTAAGGAAACTTTTATAGCGACTAATGGTACGAT
CGGTTCATCGCTTAACGTATCGACGACGTCAATGGTAGCTATCGGCATCA
GGAGAACCGTGAACAGGAAAACAATGATACAAACACCTTTAGCGAGTTTC
ACTTCACGAGTTATTGTTTTCACTAAATGTACACCACGGGATTCCTTACG
TGATCCGTTCCCGTTCCCGTTACGAGTTGTCGGAGACCGATCGTTGAGTT
GAGTCTCAGATCGTAAGCGACTGTTCCGAGAGCTGTAAAGTCGTTGTAGA
ATAACCACATACATTATAAACATCAGTAAACATAGCGTGAAAAATGATCC
GAATTCGATGAACAGTACATAGCTAGGACATAAAACAGTCGAGAAGGTAC
AAACATGTATTCGATCGCTACCCAAACTGTCTTTGTCACCGATGATGATA
AATGGAAATGTCGCAATCACCAGAGCATACAACCATGATAAAATAACAGC
TATCAAAAGTTTACGTTTAGTCATCAAGCCTCTATACCGTAACGGAAATG
TGAT

Coding sequence (CDS) from alignment at sc0000021:264065..271818-

>TCONS_00002668 ID=TCONS_00002668|Name=TCONS_00002668|organism=Clytia hemisphaerica|type=CDS|length=2073bp|location=Sequence derived from alignment at sc0000021:264065..271818- (Clytia hemisphaerica)
ATGTTTGAAGGGAAAAACATACACTTATCACCGATCGATGGCAAACCATT
ATGCAGTTTCAGCAAGAAGCTTTGTCGACAAAGACGTCTTCATAATTACG
CGTTTTGTATACGGCATATTTTGGAAGATACTGATTCACCTTTCAAACAA
TGTCCTTATCAAACGAAGTCAGGAGATATTTGTATCAACGCTGTACCTGT
TGCTGCTGCAAGAGAATATTGCAATAAGCATATGCTCATAATGGGGCTAC
AACCAAAGACTACCAAAACTCAAATAGACAAGAAACCTGTTACTACTACA
GTTAAGAAAGCATGTTCCAAGACTATCAAGAGTAAAATCTCCACAAATAG
CAGTAAAAAAGTGATGCATTTGATGGAAACACTTCAAAAAGAAGATGCAA
CGAAAAGTACGCATGCGCGTAAAAGACAAAAATCATATGACCGTTATTTG
TCAATGTCGGTGATGAGGCGTCATATTTGGAGCAAACAACCTCGCTCTGA
CGTCATGAAAGAATTGATTGAAAACAAGAAGTATTTTAGAAAGACAAAGA
AGAAGAAGATGCTGACTAGCTACACCCTGGGAACATCCGAAGATGAAAGT
GACAGCTTCATTGAATCATTTCAACAACAATGTGATGACAATGGCAGTCA
TAATTCATCAGCTGAGAAGTTATTGACTCAACTGAAACACCAACATGTTC
AACTACAAAACATTGTCAAAGAAAAAATGAAAAGTACTTCACTCTCGTAT
TCAGTGCTCTCAACTCTGGTTACAGCAAGTCGTGAGAATGTTACAGAAAC
GGCAAACATTCTTACTAACGGTAACTCGAAAAACAAAGTTTATCACCAAA
AAGAAGAATCAATTACTACAAAAATTCCATGCTGTATGGTTACTGGTAGT
ACGCGTTGCTCACAAATGGCTCTACCGTTTTCTAGATATTGTCGTAACCA
TATAAACGAAGATACTGACCAATTGCTTTTCGTTCCGAAGAACATTGCAT
CATTGCAACGAAGTGATATGCCCGGCCTTAAGATCTTCAGACCTGACCTC
TTGACAAAGGGGCTAAAAGCGAGTTCTTCTCTCAAAGCGAAACGAAAAGT
GTGTCGAAAAAGCAACCGGAAAAGAAAAGGAGCTCAAAAGAAAACACCGA
AGAAACCAAGCAAACCCAAAACCATAGCTATCCAAGCTTCTTCGCAATCG
AGTCAAGAAACAACCTCGGAGATTGATTTATCTGACGTTCAACACCCGGA
TAACCTATCTATCGGAACACCACCCATATTGAGTGAATCAAGTAGTAGCT
ACACTGAGAGCGATTCTGAGTCAGATATTTTAACACCGGAAGAAGCATTC
CGTCTACCGCCCGGTAGTCTGTCCTATCCGCCTGGTTTGGACGATGAAGA
CTCCCTTACTGGGATGCATCACACAGCCCGGGCATGCAATATAGCAGACG
AGGAGGATGAGTTAATGAGATGCGGATCCAACTTCTCAATGGATAACGAA
AAACAAGACATGATAACACGTGAATTATCTTCACCCACATTGAATCAGTT
CTCGGAATTCGACCAATCACTGTTCGGTGCTGCCACCGCTTTTTCACCAA
CATCCGGCAGTGACGTCACATTACCTCATACGTCATCTTTGACTTCACCA
AACCAAGAAATAACACCCTTGTCAGCCTCTTTTGGAACCAATCCAAAATA
TTCTTCAAAGAATCCATCACCCTTAAAAAATCATACAAATTCTCACACAG
GGCACGGTTCAGTCACGACTCTCAAAATCACACCCTTAAACATGTCACCT
CGTAAAGCACCGTCTAAACTCAACGTTAGACCACCACTTTTGACATCACA
ATCCATGGTCAAACCTCCCTTAGTTAGCAATACTTTCACACAAAGCTCGT
CAACTAAAGATGAATCTTGGAATAAACAATATATGCAGATTGATAATTTT
GGCGATCCAGATCTTTTGAATGACATTGCCATGGATGATGAAGAAACTCC
ATTAGAGAAAGTCAATCCTGATATTTTCTTTTCATCAGCTTTTCCAGTTA
CTACCACCGCATCTAATGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001445XLOC_001445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002668-exon-sc0000021-1575043694:271569..271818TCONS_00002668-exon-sc0000021-1575043694:271569..271818Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1575043694:270866..271224TCONS_00002668-exon-sc0000021-1575043694:270866..271224Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1575043694:270347..270419TCONS_00002668-exon-sc0000021-1575043694:270347..270419Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1575043694:269885..269948TCONS_00002668-exon-sc0000021-1575043694:269885..269948Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1575043694:268495..268628TCONS_00002668-exon-sc0000021-1575043694:268495..268628Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1575043694:267457..267560TCONS_00002668-exon-sc0000021-1575043694:267457..267560Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1575043694:266831..266940TCONS_00002668-exon-sc0000021-1575043694:266831..266940Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1575043694:264065..266586TCONS_00002668-exon-sc0000021-1575043694:264065..266586Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:271569..271818TCONS_00002668-exon-sc0000021-1510915933:271569..271818Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:270866..271224TCONS_00002668-exon-sc0000021-1510915933:270866..271224Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:270347..270419TCONS_00002668-exon-sc0000021-1510915933:270347..270419Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:269885..269948TCONS_00002668-exon-sc0000021-1510915933:269885..269948Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:268495..268628TCONS_00002668-exon-sc0000021-1510915933:268495..268628Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:267457..267560TCONS_00002668-exon-sc0000021-1510915933:267457..267560Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:266831..266940TCONS_00002668-exon-sc0000021-1510915933:266831..266940Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1510915933:264065..266586TCONS_00002668-exon-sc0000021-1510915933:264065..266586Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:271569..271818TCONS_00002668-exon-sc0000021-1491911889:271569..271818Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:270866..271224TCONS_00002668-exon-sc0000021-1491911889:270866..271224Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:270347..270419TCONS_00002668-exon-sc0000021-1491911889:270347..270419Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:269885..269948TCONS_00002668-exon-sc0000021-1491911889:269885..269948Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:268495..268628TCONS_00002668-exon-sc0000021-1491911889:268495..268628Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:267457..267560TCONS_00002668-exon-sc0000021-1491911889:267457..267560Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:266831..266940TCONS_00002668-exon-sc0000021-1491911889:266831..266940Clytia hemisphaericaexon
TCONS_00002668-exon-sc0000021-1491911889:264065..266586TCONS_00002668-exon-sc0000021-1491911889:264065..266586Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002668-proteinTCONS_00002668-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:264065..271818 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17148	1.12207	0.67205	0.585402	0.417772	0.324581	0.676084	0.889878	0.50895	1.0261	1.59304	1.46827	1.23827	0.605856	0.511471	0.73132	0.578469	0.381888	0.312712	0.251939	0.420342	0.395742	1.28947	1.10176	2.30433	2.47906	0.314128	0.19429	0.716585	0.524792
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025927Potential_DNA-bd
Blast
[Close]
BLAST of TCONS_00002668 vs. Swiss-Prot (Human)
Match: IN80D (INO80 complex subunit D OS=Homo sapiens GN=INO80D PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 4.763e-26
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:   36 MFEGKNIHLSPIDGKPLCSFSKKLCRQRRLHNYAFCIRHILEDTDSPFKQCPYQTK-SGDICINAVPVAAAREYCNKHMLIMGLQPK 293
            M+EGK+IH S +D KPLCS+S KLC+QRRL+ YAFCIRH+LED  +PFKQC Y  K +   C N +P +  R YCN H+ ++G  PK
Sbjct:    1 MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPK 87
The following BLAST results are available for this feature:
BLAST of TCONS_00002668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IN80D4.763e-2656.32INO80 complex subunit D OS=Homo sapiens GN=INO80D ... [more]
back to top