TCONS_00002697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002697
Unique NameTCONS_00002697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=transcript|length=1146bp
TTCAATTGATTCCAAATGCCCCTGGGAAATTAAATTTTAAGATCATCAGT
CTATAAATACGCCAAAATTCAATCGAAGGTCAGAACATTTACATTTCACA
ACATCAGTAGACGATCGCAAAGACATAAGGCTAACAATTAATTGAAAACC
TGGTACAATATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGC
TTCTGTTGAAGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTT
TCAATGGTCAAACTAACAAATTCAAGTGCACTGATCATGAAGCAGCAGAT
GGCCCTGGTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGA
TCAAATCATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAAC
caatcaagaaaattttgaaaatgatagcTGAAATAAGAGTCTGTACTGAG
GATTGTGAGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCtga
gaaatttgcaaaaatctacCAAGAAAGAGGGTGTAAATCAGAAGTTTTGG
AAAATGACCATTCATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGT
AAAGTCATTTGTGATTGGCTAGCTGAACACAAAAATGCACCAATGGATCC
AATCTTTGGAACGCTCTTGAACCCAACTGGAGGAAGAGTTGGTCCTGGTG
ATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTGCT
TATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCACAA
GACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTGGA
GTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACATGC
GAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAATG
ATATTTGTGTTTTCaatttaagttttatttattgtattttaaatgtaaat
tctaaaaattgtaaaaaataattaatttgaaaacaaactgcaatGAGAAA
GATAAACGAATCTTTGGTTATCATACCGTATCAGTCCATATTGCTGATTT
AAAAACCCTCAACCACTGATCAGAAGTCTTACTTACTCACCGTGCT
Run BLAST on NCBI

protein sequence of TCONS_00002697-protein

>TCONS_00002697-protein ID=TCONS_00002697-protein|Name=TCONS_00002697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MGGYLSFEQDKTTASVEEVKKYCESVVFVRFNGQTNKFKCTDHEAADGPG
QPESELGHILHQLDQIIRMAPTVTEFEITEPIKKILKMIAEIRVCTEDCE
SVDKCYERLLEDAEKFAKIYQERGCKSEVLENDHSFYWGTRQQMLFGKVI
CDWLAEHKNAPMDPIFGTLLNPTGGRVGPGDTGFFHDSLFDNMGPFAYHS
AVHDGFGYLKTNHKTGPGYNYLNKGIFGDWSPLGGQYSGLEFWNETCEKL
EPEKADESVFVMK
Run BLAST on NCBI

transcript from alignment at sc0000021:516956..519405-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at sc0000021:516956..519405- (Clytia hemisphaerica)
TTCAATTGATTCCAAATGCCCCTGGGAAATTAAATTTTAAGATCATCAGT
CTATAAATACGCCAAAATTCAATCGAAGGTCAGAACATTTACATTTCACA
ACATCAGTAGACGATCGCAAAGACATAAGGTAAAGCTCAATTTCTTATAT
TTCCATGCCGCGTATGAAATTAACTTAAATGGTCGCTTTCTTTACTCAAA
CTAGTATTTTCCATTTACCATCACGAATAATGTATATTTTAACCTTCTAT
AAACTAACCTGATAACAGCTGTTCATAATTTTCTTACGGGCACAGTATAC
CTCTGAAGGCCCTTGAAAATTAATCATCTGAGGAAAATAGTTCTCCTGTG
GAAAATTCTACTGTACAACAAGAATCTTGTTGTGCGCTGGAAAGTCAAAA
ACTAAATTTTCCTGATACATCGCCCTATTTTTAAACACAATTTAAGCAGT
TTTGTTGTCATTCCTAGTCCTTTAAGACTAGTGTGGTCCTTACGATTCTG
AGATTAGCATATTCGTCAGGTTTTCACCCATCCTTTTAGAGCTTTAGCGT
GGTGGGCAGAAAACAATCACGATCTGATCTCAGGTTACTGTAAACAAATT
CAAGGCAATTGGCGTCAAATTTATTCAAAACAGTATCTCGTTTAACCAGG
AATGATTTTGTAGTAAAAGTTTCATTTACACCTTCTCCTTAATTTCACAC
AGGCTAACAATTAATTGAAAACCTGGTACAATATGGGAGGCTATTTATCT
TTCGAACAAGACAAAACTACTGCTTCTGTTGAAGAAGTTAAGAAATATTG
CGAATCTGTTGTGTTTGTACGTTTCAATGGTCAAACTAACAAATTCAAGG
TGAGTTTTTAAAAACTAAAGGTACACGTTTTTTTACAAGAACAAACTATA
TAAGAACATAAGGCTTCGATAGGCTATTTTAGCCATATTTTCCAGTGGTT
AGGGGTTTCCATCGGGCCTGTGTGTAACTATCAATCAGATATTTGACACT
ATTCTGTAAGGAAATTATGTCTTTGAAACCTCTTACGATGATTTTGTAAA
CTTTTTTCCACATCTTTTTCAGTGCACTGATCATGAAGCAGCAGATGGCC
CTGGTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAA
ATCATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAACCAAT
CAAGAAAATTTTGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATT
GTGAGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAA
TTTGCAAAAATCTACCAAGAAAGAGGGTGTAAGTATATTGCAAATTTTTG
GATTAGAAACACAGTGTCTGCGATATTGTCATTTCCATCACGTTACCAAA
TACTCCTCTAGTTATTAATTAAAAAATTTATGTCTTAAACAATTAAAGGG
AACGGAAAATTTTATAGACCGTTTTTACGAATTTATTACATGATATTAAA
GTTGAAGATGTTTCATAAATGTTTTACAGGTAAATCAGAAGTTTTGGAAA
ATGACCATTCATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGTAAA
GTCATTTGTGATTGGCTAGCTGAACACAAAAATGCACCAATGGATCCAAT
CTTTGGAACGCTCTTGAACCCAACTGGAGGTTAGTAACTTGTTAATTTCT
CAAAGGAAGAGAATCTTATCAATGATTTTAATTATTTCTGGGGAAGTTTT
TTAGTCGAGTTCGGAATTTTTGAAATATTGATAGATTATGAAAGCGTTGG
ATAGCCTAGTCTTCTCCATTCTTGTGTACTTATGAAGTTCTTTATTTCTA
TAGTGTATTGAATATTTTGTGGGATATCTTGATATATAAATTGACGCACC
AAATATTTCTGCTACCGCTTAAAGAAATGCCTTTTGAAAAAACTCAAAAC
TTAAGACTATACGTAATGACTAATTTCTTTATTCAGGAAGAGTTGGTCCT
GGTGATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTT
TGCTTATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACC
ACAAGACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGAT
TGGAGTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAAC
ATGCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGA
AATGATATTTGTGTTTTCAATTTAAGTTTTATTTATTGTATTTTAAATGT
AAATTCTAAAAATTGTAAAAAATAATTAATTTGAAAACAAACTGCAATGA
GAAAGATAAACGAATCTTTGGTTATCATACCGTATCAGTCCATATTGCTG
ATTTAAAAACCCTCAACCACTGATCAGAAGTCTTACTTACTCACCGTGCT

Coding sequence (CDS) from alignment at sc0000021:516956..519405-

>TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000021:516956..519405- (Clytia hemisphaerica)
ATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGCTTCTGTTGA
AGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTTTCAATGGTC
AAACTAACAAATTCAAGTGCACTGATCATGAAGCAGCAGATGGCCCTGGT
CAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAAATCAT
CCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAACCAATCAAGA
AAATTTTGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATTGTGAG
AGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAATTTGC
AAAAATCTACCAAGAAAGAGGGTGTAAATCAGAAGTTTTGGAAAATGACC
ATTCATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGTAAAGTCATT
TGTGATTGGCTAGCTGAACACAAAAATGCACCAATGGATCCAATCTTTGG
AACGCTCTTGAACCCAACTGGAGGAAGAGTTGGTCCTGGTGATACTGGCT
TTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTGCTTATCACTCT
GCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCACAAGACTGGACC
AGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTGGAGTCCATTGG
GAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACATGCGAGAAATTG
GAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001457XLOC_001457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002697-exon-sc0000021-1575043694:519277..519405TCONS_00002697-exon-sc0000021-1575043694:519277..519405Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:518557..518703TCONS_00002697-exon-sc0000021-1575043694:518557..518703Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:518078..518333TCONS_00002697-exon-sc0000021-1575043694:518078..518333Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:517727..517876TCONS_00002697-exon-sc0000021-1575043694:517727..517876Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:516956..517419TCONS_00002697-exon-sc0000021-1575043694:516956..517419Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:519277..519405TCONS_00002697-exon-sc0000021-1510915933:519277..519405Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:518557..518703TCONS_00002697-exon-sc0000021-1510915933:518557..518703Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:518078..518333TCONS_00002697-exon-sc0000021-1510915933:518078..518333Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:517727..517876TCONS_00002697-exon-sc0000021-1510915933:517727..517876Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:516956..517419TCONS_00002697-exon-sc0000021-1510915933:516956..517419Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:519277..519405TCONS_00002697-exon-sc0000021-1491911889:519277..519405Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:518557..518703TCONS_00002697-exon-sc0000021-1491911889:518557..518703Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:518078..518333TCONS_00002697-exon-sc0000021-1491911889:518078..518333Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:517727..517876TCONS_00002697-exon-sc0000021-1491911889:517727..517876Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:516956..517419TCONS_00002697-exon-sc0000021-1491911889:516956..517419Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002697-proteinTCONS_00002697-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:516956..519405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2415.82	2566.93	3338.25	3227.74	265.004	198.032	14.9931	21.647	2.96731	18.7727	2.14818	0.680849	0.201453	0.0261513	0	0	0	0	0.160997	0.0842361	1.72059	1.28565	396.622	350.286	0	0.0725618	13.8101	17.0657	119.183	147.761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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