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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002733 ID=TCONS_00002733|Name=TCONS_00002733|organism=Clytia hemisphaerica|type=transcript|length=2739bp ctgGTGGTAGTGAGCTAGTCTGTAAAATTCGAGGGGTTTAGGGTTGATGT GAAAGGGCATTTCCTTGAGAAAATGTTTATTTAACCTTCTATTTTCTGTT TTGTAGATATCGGATAGATTCAGATCTGACATCAGGAAGATGGCATTCCC AACATTTTTCATGGTCAACTTCCTTGTGTTATGCATCAGTACTTTATGGA CATTGATATATGTTGCCGCCATCTTGGTTCTGTATCTACATGACGACTac gatttcaaagattttttagtCGAAGACTATATGGTGTATGTTATTTACGT CAAATTTGCTGTATATCTGGTACTACTTGGACTAGTTGGCTCAATAAAGT GCACCAGACTGCGCCATATCTATTTGACACTTGCCTTTGTCTACCTACTA GATGCCTTGATTGCTGGATGTTTTGTTATGatgtattttttgaattttga ccaaCAGAAGACTAAATATGATTTGGAATGTATTCTTTTTGTGGCAATAT CGAATGGTATCATTATTCTGTTGGATATGATTATCATGCCTATCTTGAGA TGTTTCCATCGGCAAGAAGAATATCGAAAGAATATCGGCCTGAAACCAAT TCCTAAACGTGGAAAGAAAATGTCAAGAGCAAATGATACATTACAAAACC CTTTCAGCACCGCGCCATCACTCTTCTCACGTAACTCGGTCATGTTAGAA TCAGCCACTGAGGAAAGTCACGAAGATTTCGAACGCTTCCGATTAGACAG TGCTGTCATCAAAGAAATTGACATCAAAACTGGACAAATATACCAAAACC AAAACGCTTATATCTCTACACGTACAAACAGTGTTACATTCCATGGTCAT GGTTTACTAAACCAGAAAGCGTATACAGCGCCAGCTAACACGCAATCTGA AGTCTTTTACGAAGATTCGTCAAGCAAGGATTATGGCAAATCAAGTTTTC TTATTGCCGCTAAGCAGCAAATGACACGATCTAGGAAAGATTCTGACAGT AGTGTTGACAGTATAAGCAGTAATGAGAGCGATGTCAGTAGTACACCAAG TACAATAGAAACTAATCTATCTTCAATCAATCCTGTATCGAATAATAAAG CCTCCTTACCAAGCACTCCAGAGAGAGAAACGGAATTTCCTTCACCACCG TCACCTGCCGAGCTCAGCCAATCAACTTCACCCTCTTTTCGGCAAAGAAC TATTTCCAAACCGACTCATGCACCTCCTAAACCACCAGCACCTGTAAGAA GCAGCTCAATCGATTACACTTTAACGGAATCACCGCTTCAGAAAGATTCG CCTCAAACCCCATCAACACCTATTAGAAGCGGTTCCATTGATTTCGGCAT TACAGAGGAAGTGCTTCGACAAGCTACAGCAAGAATCAAGCCAGCGGCAC CGATTCGAAGCAGCTCTACAGACTCAACGGATAAGCCACCCACTCCAACT AGAAGTAGTTCAATCGATAGTGCTACGGCTAAGATCCTCATCCGACAAGA GAAAGTCCAAGCGCCGTCACCTCTAGCAAGATCAGCTACAATTGACCAAG TTGATGCTAAAACACTATCCGTTCAAGCTACAAAACCTCAGATCCAAGAG CAAACCGTAATTGCCAAAGCTGCAGTAGCCGTCGAACAAACCCCTACTAA ATTTTCACTTGATGAAGGTactccaaaaagaaaaatgagacCCGCCAAAC CTTTACGCCCCTCTTTGATGTATATGAAAGAAGAAGACAAACCAACGCCG ATTTTTCATCATAAACCACCCCATTCTCCACCCGAAGGACCACCACCGCC ACCACCTGAATCGGAATCTCCATTCAAGATTGAAAGTTTCACTTATGAAA ATATAGAACACATGAACGGGGAGATAAATGCTTCGATAGAATCGTCAGCA AATGATGAACTTAACccttcaaaagacttttttaaaGAGCAAAACTCATC AACCGAGCTGAAAGACCAGCTTCCCGAAGACATTTCTAAAAGTGTTACTC AGGATGGCTTTGTTATAAGTTTAGACGGTGGAAATCGAAATTCTGTGGTC GAAAACGAAACTTCTACAGACTTATTAGTAGACAAAGATGAAAACTGTAA TACAGTTACtgacaaaaacttaaaaatattgGATTTATCCGTACCGTATA CAGAAAATAATGACTCgataataaaagataaaatTCCCGTTGAGAATACT AATGGGTTTGCAATAACGTTAGAAACTACCAAGTAAttcactttttaaat taaagTCACAGCATGAAATATTTATCTTGAAATTCCAATATCCTTAGTAT ATGTAAATTTTAATCATATATATCATTGCTTTGCACATAAAAGAACTGGT ACAAAAAAAATTAGTGTTGTCTCAATAATAGGACATGCACAGCGTGTTTC ACGGATAAATAATCGAAATATTAATTTAATTtctagaagtgtatttctca ggtctattgacccctgtgaaacaatcttacatctttacaatttatagatc ttatcattccatttGTTTGTCAATTCTATTATAGAGTTTACAGTTAGACA CACACACACTGGGTCTCTAACCCGTTCTTCTTATAATCATGTTGTTTCcg tcgtaaatttctttaaatagagtttagtcctaggactacctctcactttc catatatggctcttctttttttttcgatgttttttcttttgctttatgat gccattgttttattatctcgcgttctttccttgaaaaat Run BLAST on NCBI protein sequence of TCONS_00002733-protein >TCONS_00002733-protein ID=TCONS_00002733-protein|Name=TCONS_00002733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp
MAFPTFFMVNFLVLCISTLWTLIYVAAILVLYLHDDYDFKDFLVEDYMVY VIYVKFAVYLVLLGLVGSIKCTRLRHIYLTLAFVYLLDALIAGCFVMMYF LNFDQQKTKYDLECILFVAISNGIIILLDMIIMPILRCFHRQEEYRKNIG LKPIPKRGKKMSRANDTLQNPFSTAPSLFSRNSVMLESATEESHEDFERF RLDSAVIKEIDIKTGQIYQNQNAYISTRTNSVTFHGHGLLNQKAYTAPAN TQSEVFYEDSSSKDYGKSSFLIAAKQQMTRSRKDSDSSVDSISSNESDVS STPSTIETNLSSINPVSNNKASLPSTPERETEFPSPPSPAELSQSTSPSF RQRTISKPTHAPPKPPAPVRSSSIDYTLTESPLQKDSPQTPSTPIRSGSI DFGITEEVLRQATARIKPAAPIRSSSTDSTDKPPTPTRSSSIDSATAKIL IRQEKVQAPSPLARSATIDQVDAKTLSVQATKPQIQEQTVIAKAAVAVEQ TPTKFSLDEGTPKRKMRPAKPLRPSLMYMKEEDKPTPIFHHKPPHSPPEG PPPPPPESESPFKIESFTYENIEHMNGEINASIESSANDELNPSKDFFKE QNSSTELKDQLPEDISKSVTQDGFVISLDGGNRNSVVENETSTDLLVDKD ENCNTVTDKNLKILDLSVPYTENNDSIIKDKIPVENTNGFAITLETTK Run BLAST on NCBI transcript from alignment at sc0000021:760420..765230- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002733 ID=TCONS_00002733|Name=TCONS_00002733|organism=Clytia hemisphaerica|type=transcript|length=4811bp|location=Sequence derived from alignment at sc0000021:760420..765230- (Clytia hemisphaerica) CTGGTGGTAGTGAGCTAGTCTGTAAAATTCGAGGGGTTTAGGGTTGATGT
GAAAGGGCATTTCCTTGAGAAAATGTTTATTTAACCTTCTATTTTCTGTT
TTGTAGATATCGGATAGATTCAGATCTGACATCAGGAAGATGGCATTCCC
AACATTTTTCATGGTCAACTTCCTTGTGTTATGCATCAGTACTTTATGGA
CATTGATATATGTTGCCGCCATCTTGGTTCTGTATCTACATGACGACTAC
GATTTCAAAGATTTTTTAGTCGAAGACTATATGGTGTATGTTATTTACGT
CAAATTTGCTGTATATCTGGTACTACTTGGACTAGTTGGCTCAATAAAGT
GCACCAGACTGCGCCATATCTATTTGACACTTGCCTTTGTCTACCTACTA
GATGCCTTGATTGCTGGATGTTTTGTTATGATGTATTTTTTGAATTTTGA
CCAACAGAAGACTAAATATGATTTGGAATGTATTCTTTTTGTGGCAATAT
CGAATGGTATCATTATTCTGTTGGATATGATTATCATGCCTATCTTGAGA
TGTTTCCATCGGCAAGAAGAATATCGAAAGAATATCGGCCTGAAACCAAT
TCCTAAACGTGGAAAGAAAATGTCAAGAGCAAATGATACATTACGTAAGT
CTTTTTAATTCTATTTGTAATTATTTAATTTGGATCAGGTCTGGTTTGAG
AGGCTCCCGGCTGAATTCTTAGCCAGAGTTGCTAAAGAATTCACCTGAAG
TTTTAATTAACGGGAGTAAAATTGTACTTTGAATATGTAACATTCTTAAA
GTTGGAGAAATCTCAAAATGTTATGCTTTGTAACTTTTTGATATGAGACC
CAAGTCCTGGCGAAGGACTGACCGGTGAAGTTGGCCGTTTAAACCAAATA
ATTGAAAAATATTGCAATGAATGTATTGTGCGAACAAAAAACACTCCATT
AGAGAATCCGGCAAACGATAGAACGATTTCTGATTTGTTTGTATCCTTGA
AATCAAAATTTTGTAATACTTTTGATGGAAAATCATATTCAAAAGATTCT
TGAGTTAAGACATATTATCTTTTTTAATCATTAGTCGCGCGGCTGAGGTC
GAAAAAAGTGGCTAGAAAATGATTTTCGTGATACACCTCTTAGATTCCAC
TTTTTTGGATGGAAACTCTCGAATTAGTATATGTAGATTCCAAAATCAAA
AAGTTTCCACGATATTATCGTGCAAGTAACGAGTAAATGGCGATCTTTTG
CGTTTCCAGGCAAAATTGCAAGGCCTGGAAATTCATGATTTTTGGGGGGT
CTTCAAATTAAAAAAAGACCTATATCACATGATAGAGCTCTTCAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTCCAGGCCTTGCAATTTTGCCTGGAAACGCAAA
AAATCGCCAATTACTCGTTACTTGCACGATAATATCGTGGAAACTTTTTG
ATTTTGTAATCTACACATACCAATTCGCGAGTTTCCGTTGTTTTTTTTGG
AATCTAAAAGATGTATCACGAAATGAAACGTTTTTCGACCTCAGCCGCGC
GACTACATGTTAAGCACTTAAAATTATTTCCCTTCGTTCTTGGTTTTGTT
TGATTAATCTTTTCCGACAATTAAAAGCTTGCGGTAGATTATAGTCTTAT
GTAAAGAAATGAGTTGCCCTGGTATAAAGTGCCTCCCAAGAAAGAACTTA
GAAAAAGATGCTATCAGATTTGCTGTTTTCAACCTAAATCAAACGTGCTT
CTCAACAAATTTTATTAAAAAGTTTCCACTTAAAAACGAAGAATCAGATT
TGCTGTTGTCAACCTAAATCAAACGTGCTTCTCAACAAATTTTATTAAAA
AGTTTCCACTTAAAAACGAAGAATGAATAAAACCACAAGCTCTATATTTT
TAGTCAAAAATTTGAAACCTTTTCTGTATGCAATGTTAGCGTTAAACCGG
GAAACCCGATTGACGGATTTATATTGAATAATTTTCCTTCGTAACTTTGT
TTTCTTCTTATCAGTTAAACCCTCAGTCACTCACTAGACAAACAAGCTTT
CATCAGGGAGTTATATTCTAAGTATTTTGAAAATGAGATGATTATTTTTA
TAATTTCTTTCCATAGAAAACCCTTTCAGCACCGCGCCATCACTCTTCTC
ACGTAACTCGGTCATGTTAGAATCAGCCACTGAGGAAAGTCACGAAGATT
TCGAACGCTTCCGATTAGACAGTGCTGTCATCAAAGAAATTGACATCAAA
ACTGGACAAATATACCAAAACCAAAACGCTTATATCTCTACACGTACAAA
CAGTGTTACATTCCATGGTCATGGTTTACTAAACCAGAAAGCGTATACAG
CGCCAGCTAACACGCAATCTGAAGTCTTTTACGAAGATTCGTCAAGCAAG
GATTATGGCAAATCAAGTTTTCTTATTGCCGCTAAGCAGCAAATGACACG
ATCTAGGAAAGATTCTGACAGTAGTGTTGACAGTATAAGCAGTAATGAGA
GCGATGTCAGTAGTACACCAAGTACAATAGAAACTAATCTATCTTCAATC
AATCCTGTATCGAATAATAAAGCCTCCTTACCAAGCACTCCAGAGAGAGA
AACGGAATTTCCTTCACCACCGTCACCTGCCGAGCTCAGCCAATCAACTT
CACCCTCTTTTCGGCAAAGAACTATTTCCAAACCGACTCATGCACCTCCT
AAACCACCAGCACCTGTAAGAAGCAGCTCAATCGATTACACTTTAACGGA
ATCACCGCTTCAGAAAGATTCGCCTCAAACCCCATCAACACCTATTAGAA
GCGGTTCCATTGATTTCGGCATTACAGAGGAAGTGCTTCGACAAGCTACA
GCAAGAATCAAGCCAGCGGCACCGATTCGAAGCAGCTCTACAGACTCAAC
GGATAAGCCACCCACTCCAACTAGAAGTAGTTCAATCGATAGTGCTACGG
CTAAGATCCTCATCCGACAAGAGAAAGTCCAAGCGCCGTCACCTCTAGCA
AGATCAGCTACAATTGACCAAGTTGATGCTAAAACACTATCCGTTCAAGC
TACAAAACCTCAGATCCAAGAGCAAACCGTAATTGCCAAAGCTGCAGTAG
CCGTCGAACAAACCCCTACTAAATTTTCACTTGATGAAGGTACTCCAAAA
AGAAAAATGAGACCCGCCAAACCTTTACGCCCCTCTTTGATGTATATGAA
AGAAGAAGACAAACCAACGCCGATTTTTCATCATAAACCACCCCATTCTC
CACCCGAAGGACCACCACCGCCACCACCTGAATCGGAATCTCCATTCAAG
ATTGAAAGTTTCACTTATGAAAATATAGAACACATGAACGGGGAGATAAA
TGCTTCGATAGAATCGTCAGCAAATGATGAACTTAACCCTTCAAAAGACT
TTTTTAAAGAGCAAAACTCATCAACCGAGCTGAAAGACCAGCTTCCCGAA
GACATTTCTAAAAGTGTTACTCAGGATGGCTTTGTTATAAGTTTAGACGG
TGGAAATCGAAATTCTGTGGTCGAAAACGAAACTTCTACAGACTTATTAG
TAGACAAAGATGAAAACTGTAATACAGTTACTGACAAAAACTTAAAAATA
TTGGATTTATCCGTACCGTATACAGAAAATAATGACTCGATAATAAAAGA
TAAAATTCCCGTTGAGAATACTAATGGGTTTGCAATAACGTTAGAAACTA
CCAAGTAATTCACTTTTTAAATTAAAGTCACAGCATGAAATATTTATCTT
GAAATTCCAATATCCTTAGTATATGTAAATTTTAATCATATATATCATTG
CTTTGCACATAAAAGAACTGGTACAAAAAAAATTAGTGTTGTCTCAATAA
TAGGACATGCACAGCGTGTTTCACGGATAAATAATCGAAATATTAATTTA
ATTTCTAGAAGTGTATTTCTCAGGTCTATTGACCCCTGTGAAACAATCTT
ACATCTTTACAATTTATAGATCTTATCATTCCATTTGTTTGTCAATTCTA
TTATAGAGTTTACAGTTAGACACACACACACTGGGTCTCTAACCCGTTCT
TCTTATAATCATGTTGTTTCCGTCGTAAATTTCTTTAAATAGAGTTTAGT
CCTAGGACTACCTCTCACTTTCCATATATGGCTCTTCTTTTTTTTTCGAT
GTTTTTTCTTTTGCTTTATGATGCCATTGTTTTATTATCTCGCGTTCTTT
CCTTGAAAAAT Coding sequence (CDS) from alignment at sc0000021:760420..765230- >TCONS_00002733 ID=TCONS_00002733|Name=TCONS_00002733|organism=Clytia hemisphaerica|type=CDS|length=2097bp|location=Sequence derived from alignment at sc0000021:760420..765230- (Clytia hemisphaerica) ATGGCATTCCCAACATTTTTCATGGTCAACTTCCTTGTGTTATGCATCAG TACTTTATGGACATTGATATATGTTGCCGCCATCTTGGTTCTGTATCTAC ATGACGACTACGATTTCAAAGATTTTTTAGTCGAAGACTATATGGTGTAT GTTATTTACGTCAAATTTGCTGTATATCTGGTACTACTTGGACTAGTTGG CTCAATAAAGTGCACCAGACTGCGCCATATCTATTTGACACTTGCCTTTG TCTACCTACTAGATGCCTTGATTGCTGGATGTTTTGTTATGATGTATTTT TTGAATTTTGACCAACAGAAGACTAAATATGATTTGGAATGTATTCTTTT TGTGGCAATATCGAATGGTATCATTATTCTGTTGGATATGATTATCATGC CTATCTTGAGATGTTTCCATCGGCAAGAAGAATATCGAAAGAATATCGGC CTGAAACCAATTCCTAAACGTGGAAAGAAAATGTCAAGAGCAAATGATAC ATTACAAAACCCTTTCAGCACCGCGCCATCACTCTTCTCACGTAACTCGG TCATGTTAGAATCAGCCACTGAGGAAAGTCACGAAGATTTCGAACGCTTC CGATTAGACAGTGCTGTCATCAAAGAAATTGACATCAAAACTGGACAAAT ATACCAAAACCAAAACGCTTATATCTCTACACGTACAAACAGTGTTACAT TCCATGGTCATGGTTTACTAAACCAGAAAGCGTATACAGCGCCAGCTAAC ACGCAATCTGAAGTCTTTTACGAAGATTCGTCAAGCAAGGATTATGGCAA ATCAAGTTTTCTTATTGCCGCTAAGCAGCAAATGACACGATCTAGGAAAG ATTCTGACAGTAGTGTTGACAGTATAAGCAGTAATGAGAGCGATGTCAGT AGTACACCAAGTACAATAGAAACTAATCTATCTTCAATCAATCCTGTATC GAATAATAAAGCCTCCTTACCAAGCACTCCAGAGAGAGAAACGGAATTTC CTTCACCACCGTCACCTGCCGAGCTCAGCCAATCAACTTCACCCTCTTTT CGGCAAAGAACTATTTCCAAACCGACTCATGCACCTCCTAAACCACCAGC ACCTGTAAGAAGCAGCTCAATCGATTACACTTTAACGGAATCACCGCTTC AGAAAGATTCGCCTCAAACCCCATCAACACCTATTAGAAGCGGTTCCATT GATTTCGGCATTACAGAGGAAGTGCTTCGACAAGCTACAGCAAGAATCAA GCCAGCGGCACCGATTCGAAGCAGCTCTACAGACTCAACGGATAAGCCAC CCACTCCAACTAGAAGTAGTTCAATCGATAGTGCTACGGCTAAGATCCTC ATCCGACAAGAGAAAGTCCAAGCGCCGTCACCTCTAGCAAGATCAGCTAC AATTGACCAAGTTGATGCTAAAACACTATCCGTTCAAGCTACAAAACCTC AGATCCAAGAGCAAACCGTAATTGCCAAAGCTGCAGTAGCCGTCGAACAA ACCCCTACTAAATTTTCACTTGATGAAGGTACTCCAAAAAGAAAAATGAG ACCCGCCAAACCTTTACGCCCCTCTTTGATGTATATGAAAGAAGAAGACA AACCAACGCCGATTTTTCATCATAAACCACCCCATTCTCCACCCGAAGGA CCACCACCGCCACCACCTGAATCGGAATCTCCATTCAAGATTGAAAGTTT CACTTATGAAAATATAGAACACATGAACGGGGAGATAAATGCTTCGATAG AATCGTCAGCAAATGATGAACTTAACCCTTCAAAAGACTTTTTTAAAGAG CAAAACTCATCAACCGAGCTGAAAGACCAGCTTCCCGAAGACATTTCTAA AAGTGTTACTCAGGATGGCTTTGTTATAAGTTTAGACGGTGGAAATCGAA ATTCTGTGGTCGAAAACGAAACTTCTACAGACTTATTAGTAGACAAAGAT GAAAACTGTAATACAGTTACTGACAAAAACTTAAAAATATTGGATTTATC CGTACCGTATACAGAAAATAATGACTCGATAATAAAAGATAAAATTCCCG TTGAGAATACTAATGGGTTTGCAATAACGTTAGAAACTACCAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002733-exon-sc0000021-1575043694:764587..765230 | TCONS_00002733-exon-sc0000021-1575043694:764587..765230 | Clytia hemisphaerica | exon |
TCONS_00002733-exon-sc0000021-1575043694:760420..762514 | TCONS_00002733-exon-sc0000021-1575043694:760420..762514 | Clytia hemisphaerica | exon |
TCONS_00002733-exon-sc0000021-1510915933:764587..765230 | TCONS_00002733-exon-sc0000021-1510915933:764587..765230 | Clytia hemisphaerica | exon |
TCONS_00002733-exon-sc0000021-1510915933:760420..762514 | TCONS_00002733-exon-sc0000021-1510915933:760420..762514 | Clytia hemisphaerica | exon |
TCONS_00002733-exon-sc0000021-1491911889:764587..765230 | TCONS_00002733-exon-sc0000021-1491911889:764587..765230 | Clytia hemisphaerica | exon |
TCONS_00002733-exon-sc0000021-1491911889:760420..762514 | TCONS_00002733-exon-sc0000021-1491911889:760420..762514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000021 | supercontig | sc0000021:760420..765230 - |
Blast
The following BLAST results are available for this feature:
|