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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002798 ID=TCONS_00002798|Name=TCONS_00002798|organism=Clytia hemisphaerica|type=transcript|length=1972bpRun BLAST on NCBI protein sequence of TCONS_00002798-protein >TCONS_00002798-protein ID=TCONS_00002798-protein|Name=TCONS_00002798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp RKDLRSDENRCFYQLSKQETNMASRGGKTKKPTTYLGKTNKKFEHVKAVVRun BLAST on NCBI transcript from alignment at sc0000023:185016..200099+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002798 ID=TCONS_00002798|Name=TCONS_00002798|organism=Clytia hemisphaerica|type=transcript|length=15084bp|location=Sequence derived from alignment at sc0000023:185016..200099+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:185016..200099+ >TCONS_00002798 ID=TCONS_00002798|Name=TCONS_00002798|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000023:185016..200099+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002798 vs. Swiss-Prot (Human)
Match: CEP41 (Centrosomal protein of 41 kDa OS=Homo sapiens GN=CEP41 PE=1 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 1.085e-56 Identity = 122/313 (38.98%), Postives = 189/313 (60.38%), Query Frame = 1
Query: 118 NKKFEHVKAVVDTGSSVSNYMSKIEDLRKNYRFRKDELFKRMKISTFSQLVLQVA----EVVNLEMERISELDENSPRSLLPEQE--EQTDG--------------------GGTDRSCLLDVIRGVGELSTSGXXXXXXDTVESEEKEQHHHHREIIAXXXXXXXXXXXXIRDSDAFEEGHIIGAINYPSAMLNRTVNYLSKEICAFKNKPGKIIIVYDDDEKLAPQVATSLLQKDVENVIMLSGGMKVLHKKFPSCFITGTVPSTC---FSPKTDRK-GKLKPPPKVISNIGVEW-YTPELLESIQEHLDE 963
N +++H+K+ +DTG+S++ Y K+E+++KNYR++KDELFKR+K++TF+QL++QVA + + + E I L++N + P+ E +T+G G + RS L VI GVGEL D + K+ H ++ P+LLLD+RD D++++ HI+GA +YP A L+RT+N S +I +KN GKIII+YDDDE+LA Q AT++ ++ EN+ MLSGG+KVL +KFP ITG++P++C P + RK K PP N +W +TPE L+ I+ +L+E
Sbjct: 20 NPRYQHIKSRLDTGNSMTKYTEKLEEIKKNYRYKKDELFKRLKVTTFAQLIIQVASLSDQTLEVTAEEIQRLEDNDSAASDPDAETTARTNGKGNPGEQSPSPEQFINNAGAGDSSRSTLQSVISGVGEL----------DLDKGPVKKAEPHTKD---KPYPDCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKNAHGKIIILYDDDERLASQAATTMCERGFENLFMLSGGLKVLAQKFPEGLITGSLPASCQQALPPGSARKRSSPKGPPLPAEN---KWRFTPEDLKKIEYYLEE 316 The following BLAST results are available for this feature:
BLAST of TCONS_00002798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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