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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002943 ID=TCONS_00002943|Name=TCONS_00002943|organism=Clytia hemisphaerica|type=transcript|length=4508bpRun BLAST on NCBI protein sequence of TCONS_00002943-protein >TCONS_00002943-protein ID=TCONS_00002943-protein|Name=TCONS_00002943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=807bp MGTRIDSHQSLDFFVDHPNRLLVSASTAIALLHSTTLENHPPYVGSRVKNRun BLAST on NCBI transcript from alignment at sc0000024:62487..107918+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002943 ID=TCONS_00002943|Name=TCONS_00002943|organism=Clytia hemisphaerica|type=transcript|length=45432bp|location=Sequence derived from alignment at sc0000024:62487..107918+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:62487..107918+ >TCONS_00002943 ID=TCONS_00002943|Name=TCONS_00002943|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0000024:62487..107918+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002943 vs. Swiss-Prot (Human)
Match: CNTN5 (Contactin-5 OS=Homo sapiens GN=CNTN5 PE=1 SV=2) HSP 1 Score: 194.512 bits (493), Expect = 4.567e-50 Identity = 161/586 (27.47%), Postives = 254/586 (43.34%), Query Frame = 2
Query: 176 CMASGNPAPNLEWSRDGVLFREGVPFNSFGGAGGKVKHILRGNALTITEVTGDEDSGRYRCIATNTVGSVF-LEKIINIRVIGEFFPPGRYQDPPIKLNPTIGRNYIIKCPQHVSGYGTKMKWGTVSENSFIPSYFLAGRPHKRGFPMSGNRFAFSYVTRDDLIFSKNVGGVRCIMVNF---GFIVASVQMVLWQAYKVINEVRKPILIQHMPETMEALVDTSFSMSCGATGYPLPKYRWQYQGIGLRSRWLNGSTELNFEFFRIKQATHVLEISRVTKYSGGTFRCYAYNTLGQTKKTGQLTVLFPPKMIRNFEDSYDVRIGSKWSFNCSATGAPTPKYEWYHNGTLVDAENDVYRTLEGGVLTLLQARYIDNGIYICIAINKVTSVTISTQLKIKAMSPVFNV-PIMDPVFVYEESSMEVACDILGGPLPTITWLKGNAPVTTISDRYKVMPSGALHITKANEDDIGKYTCRGENVLGAVEQTTTIQLLKPTVITNPPEKLTYQVGWHYGMMYCGASHDERLDLRIEWYKAGVLMNKFDSRIYLEA-RASGPPRILYFHDFKITDAGNYSCHAYTKYGDKISEQ 1915
C GNP P+ W R+G ++ L I+ + +DSG Y+C+ATNTVGS+ E + +G F GR + ++ G+ ++ C W N F PS F+A + +GN + T D VG C++ N +++ + + V+ E I + H P T+ A T+ M C A G P+P W + S+ R++++ VLEI V G + C A N+ G+ GQL V P + D+ + GS + C ATG P P Y W NG + ++ V + GVL + D G+Y C+A NK ++ S +LKI A +P F + + + V ++ + + C G P PTI+W KG+ V + R ++P G+L I A++ D GKY CRGENV G+ E ++ + +PT I P++ VG ++ C A HD LD+ W G ++ + + E+ RA L + + AG Y C T D +S++
Sbjct: 123 CEVRGNPVPSYRWLRNGTEI----------DLESDYRYSLIDGTFIISNPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNF--SGRTRS---AVSVREGQGVVLMCSPPPHSPEIIYSWVF---NEF-PS-FVAEDSRRFISQETGNLYISKVQTSD-------VGSYICLVKNTVTNARVLSPPTPLTLRNDGVMGEYEPKIEV-HFPFTVTAAKGTTVKMECFALGNPVPTITWMKVNGYIPSK------------ARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDT-QLDSGSPLRWECKATGKPRPTYRWLKNGVPLSPQSRV--EMVNGVLMIHNVNQSDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGSPKPTISWKKGDRAVRE-NKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSAEIIASLSVKEPTRIELTPKRTELTVGESI-VLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFESIRAQASSADLMIRNILLMHAGRYGCRVQTT-ADSVSDE 662 HSP 2 Score: 86.6557 bits (213), Expect = 6.897e-17 Identity = 106/397 (26.70%), Postives = 165/397 (41.56%), Query Frame = 2
Query: 779 PILIQHMPETMEALVDTS---FSMSCGATGYPLPKYRWQYQGIGLRSRWLNGSTELNFEF---FRIKQATHVLEISRVTKYSGGTFRCYAYNTLGQT-KKTGQLTVLFPPKMIRNFEDSYDVRIGSKWSFNCS-ATGAPTPKYEWYHNG--TLVDAENDVYRTLEGGVLTLLQARYIDNGIYICIAINKVTSVTI---STQLKIK------AMSPVFNVPIMDPVFVYEESSMEVACDILGGPLPTITWLKGNAPVTTISDRYKVMPSGA-LHITKANEDDIGKYTCRGENVLGAVEQTTTIQLLKPTVITNPP--EKLT-YQVGWHYGMMY-CGASHDERLDLRIEWYKAGVLMNKFDSRIYLEARASGPPRILYFHDFKITDAGNYSCHAYTKYG 1897
P+ +Q P+ + D+ +++C G P+P Y RWL TE++ E + + T ++ K S G ++C A NT+G + L + + VR G CS +P Y W N + V ++ + + E G L + + + D G YIC+ N VT+ + T L ++ P V V + +++++ C LG P+PTITW+K N I + ++ S A L I DD G Y CR EN G +Q V T P EKL Q+ + + C A+ R R W K GV ++ SR+ + +G +L H+ +DAG Y C A KYG
Sbjct: 99 PVFVQE-PDDIIFPTDSDEKKVALNCEVRGNPVPSY-----------RWLRNGTEIDLESDYRYSLIDGTFIISNPSEAKDS-GHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREGQGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKVNG---YIPSKARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQ-----VYTYPHWVEKLNDTQLDSGSPLRWECKATGKPRPTYR--WLKNGVPLSP-QSRVEM---VNG---VLMIHNVNQSDAGMYQCLAENKYG 465 The following BLAST results are available for this feature:
BLAST of TCONS_00002943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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