TCONS_00002994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002994
Unique NameTCONS_00002994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002994 ID=TCONS_00002994|Name=TCONS_00002994|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CGAACATCCAAAGAATGCACTCACACTTTTTACGAATATGGAGGGTTTGT
GAATCACGTGGAATTTCATCCCAATGGCACATGTATTGCAGCAGGTGGCT
CGGATAATACTGTCAAAGTTTGGGATATACGCATGAACAAGCTACTGCAA
CACTATCAAGTGCATGGAGGAGCGGTCAACTCGTTATCTTTTCATCCAAG
TGGAAACTACCTCGTATCCGCATCTGCAGATAATACTCTCAAGATTTTAG
ATTTGATGGAAGGACGTCTCTTTTACACTTTACACGGCCACCAGGGTGGA
GCAAATTGCGTGAAATTCAGCCGTAATGGCGAATATTTTGCTTCTGGTAG
TTCCGACGAACAGGTTATGGTTTGGAAAACGAATTTCGACACAATTGATT
ATTCGCAAGTTCTGCACGCCCATCGTAAGCGAAGTGCAACGCCCTCAAGC
CACACGCCCACCGCCTCTGTAGACGCCCGGTCAACGAATAGAACTATTGA
TGAAGACTCGACTGCGATCAATGGTTTTTCGAAGCCTGTGACGCAAAATG
GTACTGGGAACgattctgatgacgtcatgaatgtTGGACCGGCTTTGTTT
TCCATCCCTCAACCTAGTGGAAGAGACTACTCCGAGCTTGCACGTCCAGC
GTCTTCAAAGAACGGACAAGTGGGTGAGATTCCGACCACAACACCGCTCG
AGAGACGTGATATTCCGCCACAGCTGTCGGAAACATTGGAGCATATTGTC
GGACAACTTGATGTTATCACCCAGactgTGTCCATCTTAGAGCAGAGGTT
GACCATGTGCGAAAACAAACTACGAGATTGTCTCGATAACCAACACCGTA
TTTCTTTACAAATCAAACCAACGTGATGGGCTAGCAAAACAAATTACACG
CGGGAAGAGGTTTGATTTATATACGATGAGTTATTGAAGGAAGGGGTGCT
TAATGTAACGAAAAGAATATCAGAAAGTATGTTTTTACAATTCTTACGTT
TAAGTTATCTTACACGAATTCTGGCGTCAAAACGTTCTGAGTAATAGATC
CCtgtaatagatcttatcggaattttttgatttttctaaagaagcgatgc
attgtgggattgtttcaggggtattacaatagaaatctcttaggaattcc
tcgaagGAATTCTATTgcaatactcccgaaacaattccacaatgcatcgc
tgttttagaaaaattaaaaactccgataaggtctattactTCATCAGTCT
ATTTTCGCCTGTGAAAGTTTCGGGTAAGATAGTAAGGGGGCcaaccctta
ggacccgcagtATCTTTCATGAGAGGTCACTgcatgtgattttttgactG
GGGGCCAGCGAATTAGGCCTGGCAaatctttttatgtttaaaaacgTTAC
TGGCAAAACAccttggaactaatttttgcgggaactaatattcgcgctcg
aaaaaaaatttgtgggTTTTTTGTGGGTTTTGCCACAATTGATTCCCGCG
TTTATTAGTTATAATTAGTTCCAATAAAGGCAACTCCCTTTATTAAATTC
TCTAAAAGTATTGAGTCCC
Run BLAST on NCBI

protein sequence of Poc1

>TCONS_00002994-protein ID=TCONS_00002994-protein|Name=Poc1|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
RTSKECTHTFYEYGGFVNHVEFHPNGTCIAAGGSDNTVKVWDIRMNKLLQ
HYQVHGGAVNSLSFHPSGNYLVSASADNTLKILDLMEGRLFYTLHGHQGG
ANCVKFSRNGEYFASGSSDEQVMVWKTNFDTIDYSQVLHAHRKRSATPSS
HTPTASVDARSTNRTIDEDSTAINGFSKPVTQNGTGNDSDDVMNVGPALF
SIPQPSGRDYSELARPASSKNGQVGEIPTTTPLERRDIPPQLSETLEHIV
GQLDVITQTVSILEQRLTMCENKLRDCLDNQHRISLQIKPT
Run BLAST on NCBI

transcript from alignment at sc0000024:279199..291717-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002994 ID=TCONS_00002994|Name=TCONS_00002994|organism=Clytia hemisphaerica|type=transcript|length=12519bp|location=Sequence derived from alignment at sc0000024:279199..291717- (Clytia hemisphaerica)
CGAACATCCAAAGAATGCACTCACACTTTTTACGAATATGGAGGGTACGT
CTGCTAGTCTAGCAGGAAATGAGAATTTGAACAACCTTCGTTTTAGAAAT
AAAACCCAAAAATTTGGATTCTTCCTACCAGAAAGTCTTCCGTTATCAGA
AGTGTGAAGGGTGGTGAAAGAAAATTTTTCACCTTCTAAATACCATAAAC
CACCATATAATTGGATAAAACATAGTAGTTTTTAAGGTTTGCTCTGTATA
AAGTTTTTGGTAATGGTTTCAAACTATCAAGTTCAAATCTTTCAAAAGTA
AAGGGGCTTGTCATAACGGGGGCCCTATGACCTTGTACAAAACGTAATTG
AAATTTCGTGAATTTTTCCAGGTTTGTGAATCACGTGGAATTTCATCCCA
ATGGCACATGTATTGCAGCAGGTGGCTCGGATAATACTGTCAAAGTAAGT
TTAAAGTTCCGTTCACACAAGGGACTAGCCTGGTTAACAACAAGGAACTT
GGTTCACAGTAATACACCCCTGAGTCAGTGGCCCGGTCAGATCCACAACG
GCGAGTAGCCCTGTGAAAAGAATGCCTAAAAACAGGCCAAATTTTGTCCC
CGGTGGAAAATTGGTAACCTCGGTCAAAAAATAATCAAAAATTTGAACCC
AGTCAAATTTTAGAATTTTATAGATCAAAATTTGAACCCAGTCAAATTTT
AGAAACTTATAGTTGAGGCCCGGTCAAATATCATCCTTTTTAGGTCACCC
TGATCAAAAAAGGGAAATGCTTATCGCCCTGTACCGAAAAATTGAAAAAT
TGAACCCGGATGTTTATTGGAGTTATTTTCTCAGCCACCGCGGTGAGCTT
TTAAACTCTACCGGGTTACTGAGACAGGGGTGTAGTAATCTTATATAAAA
CACTAGGTAGAAGTACTTCTTTCCTACAATGCCGGTAAAAATATAATGAG
AATTTTGGTTAATTCCTCCTTTTTAGCAATTTAAAGTTCGGGCGAGAAAG
TCGATTTTGGAGGGGTTTGTAGACTTCAAGGCTATATTCTTACCCTATTG
GACCGTTCTTAAACTTTTGGATCCTCAGATTCTAAGTCTTAAGAAGCCTC
ATGTATATAAACTCTACTCTTCCAACCAAAGTTAGAGCGCTTCCAAATCG
TTTGTGGTTATAAGATTTCATGGGAATTTCCCTTTTTTCTCAAATATTAT
GACCGGGATTGTAGCTGTAACAAAATAATCCGCCATTTTTAATAAGCAGA
CCATAGTCTTGTGCCAGCAATTTGATAGATCATTTAACTCCATTCTTCGT
GCCATTCAGGTTTTTTGGTTAGGTTACAAATCACCGGTACTAAACTATGG
TCTACTATGGTCTACTTTCATCAGAGATGGCGAATTGTTTTGCTTCAACT
GCCGTTCTAAAGAACATGCTGCGAATGTGATGATCTGACAAGATCGTTCG
AGTAAAACATTCAGCATCGCGATGTCTTTTTTGCTCGAAAGCTAAAGTGA
CTGGCTTCTAATAGTTGTAAGGTTCTTACTTGGTGTTTATCGTACTCGAT
TGTTTCACCGTACTGGAAGGCCATTAATGTGCATCTGAAATCTGCATGAG
AAAGCTTGATAATCAGGATTTGCTCGGAAATTTGCATAAAATGTATAAAA
TAAGAAAAATGGATGAATGCTAAACTTTTTTTTGAAGATATCTTTAATCT
TTCGTTTTAGGTTTGGGATATACGCATGAACAAGCTACTGCAACACTATC
AAGGTAGTTATGATTTATATTTCAAATGTTATAGAGGTTTCGTTGTTTGT
TTTCTTTAATATTACTGTGACGTTACTCGTTGTGATCATAGATATCATTA
TAACTTTACGTGCCAAAGGTTGTAGGTTGTTCGATCCCCGGTCATCGTCA
ACTCAGCAAATGAGTAGCTCATATTGGGTAATCTGATCTAGGCGGAGAGT
AAGTGTGGTGCTCCAACTCAGCATTCGACCTCCCAGGACCAGATAGATAG
ATTCGATATTTTACGTGGATAGCCCAGTAATCTAGGACTTTTAGACAGTC
TTTCGATTGTTTTCACGGGGTCCATGGCCAGCCAGCTCGGCTAACTATGA
ACTGAACGGAACATTGGAAGGAGCGGGGATTCGAACCTCGAATCCCTGAT
TTGAGACGCTGACGCCTTTGACCACTTGGCCATCGCTCCCCTTGGTCTAG
CGTTAATAGAAAAAGGGATAGACTCCCTAACTCCCAGCTCAACCGACAGC
CACCAGATGAATATACTTACTTATCATGTGAAACTTAAAAAGCCTTGTGA
TGTGCAACCAAATCGAAACAAGACGACTTAAAGTCGAAAATTTCGCATAA
TACTTGAACATCAACGACGAAGACGCGTGAAACGTGACTCCTGCAGCATT
ATGCATTTTGAATGAAGGGTCACACAAAATATAGAGAATGTATTGTACAT
ATAGGTCATAGGTCACCCTGTTTTTTTATGAAAAATCTCAATCCATTAAA
AAAAAGATTCCTTAAAGAATGCGACTAAAGAATTCCATTCTATAAAGCGT
AAACAAAATCTTTCAATTCAGAATAATTCAGAGAACTGCAATATACTTGA
GAAAAATAATTTTTTTTTGAAAATGAAGAAGAACAAATGAACTTTTCATT
CTTTGATGCCAGAAACCTCATTTTGTGCTTTGAAGGAACTTGTGATAAAG
ACTTCTTTCACGTGCGCAAAGTTTATATCAACTTCTTTCTATAAACAGTA
GAATTTGTCTAAAATCGAGAAAAATGGCTAGTCAGAAAAATCTGTTGTAT
ACTATCTTTGCTTTCTGATATGAATGATGGCCCACCACCATCAAAATCAT
TGGACTTTTCCAGAAAAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAGAACGACATCGTT
TATCATTTGGAATACCCCCGTATTTGGACCATTCTATCGTGGGCGCAAAA
TAGGGCGGAAACTAAGTAGCACCTTCAGTGCAAGATTGCCGCCTCACCTT
TGGTAAAATTGGTAAAATCGTAATCCTCAAAAATCGAAGTTCCAGCCTTA
AAGGCAAAAAGCAGTAGGAGCAAGCAAGCAGCAGGCAAATAGTAGTTGAG
CTCCAGCTTCTGGACTAGAAAATGGCAGGGTAAAAACTAGCCAACTTTAA
GCTTTAAAGAAATAATACTCCTTGAGATTAAACTTAGCTTGACTCCTTTA
TAACTGCTTTAAACTGCATCCCATTAAACAAACCATCCCCAATCTCTTGC
CGTTTATCCCGTGAAAAAAATATAGGGGAAAGATTCCAGAAAAGTAACAA
GAATCTTAGTGCGGAAATGGGAATCTTGGTACAAACAACGGTACCATGAT
TTAAAATGAAAATCCTGATTAGCAAAAAGGTGTATCAAGATCGGTGAAGT
TTGATTGAAGCTCGATTAGTTTGATTTATTACCTTGTTGTCCATTCTTTT
TACATTCCGATCCGACGGCTTATTATTAGCAGACGCCCACGCTAAAGCTT
AAAGAGCGAGCCAATATCTATCATCCCATCGGGGAGGAAAAGCTGGAAAT
TTTACTAACCAAACTCATCGAACACTAATCAAACTTCATCGGATAAAAAA
CTGTCATCATTAACGAGGGACCGCTGTACATTGTGCGGTTGTTGTGTGTG
TATGGTGGGGCTGGATCTAAATGTCCTTTGTGCGGCGGTGAAAATAGGTT
AAATTGAAATTTGCTGTACACCCCACCGTACCCACCGTAAATCACCGTAT
AATGACAATGTACGGCAGTGTCTAGGCAGGGTCGTTTCGATTATACAAAA
ATGATTGCTGAATTTCAATTGACATGATTTCTAAGAAATACCTGCTAAAA
CTGACTGTTTGTCACAACTGGTTTCACTATTAACACATAACTATCTGGTG
AAATTTAAAAAGGAAAAAAAGATCATACCTGTGCTGTTTGTAGTTTTGGT
GAGGAAGAGAAGAGAGTGTACAATAATGTTGTTGTTGTGGAAAATTAACT
CTTTTTGTACTACTTATTGAGCATGGTCAATTTATTGGTGCATTCACTAA
CTACACAAACATAAAATACTTAGTAGTAAACGAAAATTAAACCTCTTTAA
ACACTCTACAAAAGACCAGAAAACATGATAAAAATTTGTACAGCAGCAGC
AAGTTTCAAAAGCATGTGCAATCAAGCAGCCATTAAAAAGTTCTCACGAT
GAATGTTTACAAAGGCTTGGTTACACTTCTTGCACTGGCGTATTTTATTT
ATTAAGAAAAGCCCTGTTTTTTATCACTTTTTATCTTTGTGGGTGAGTCC
AGCTTTAGAATATTGGCTGTAGTACGCCCGTAGTACGCCCGCCTACGCCA
TAATAATACTGCTATATTCGTTTTCTCAACAAAAATCCACCAAACCACGA
ACCACCACAGAAGCTGATCGTAATACTTTCGCTAGGCGAAATTAATAAAA
CATAACACATGAAAATGCCACGTAAGGTGGTCGAAATATCGTTAAAGAAA
AAGTGTGTTATATTTTATTTTTATTCTTACTTATCATGTCATATCTTCTA
GTGCATGGAGGAGCGGTCAACTCGTTATCTTTTCATCCAAGTGGAAACTA
CCTCGTATCCGCATCTGCAGATAATACTCTCAAGGTATATAAACGATTCT
GTTACCATTTTATATCCACGAAGAGGGGTTTGACAAACATCTCCACGGTG
TAGTACAAAGAGAGTTTCCAGGGGAGTCTGAAGGAGTGGTTTTTCATTTT
TCCACATTTTTCAAGGGGATAAAAGACTAATTTTAGCTCACTTTGAGGTA
TGAAAATAATTTCCCCAAGTGTTTCTTCGCAAGTTTTGCCATTTTCCAGG
GGGCATCCACACTTTTCCAAGAATTTTTTTGACTTGAAAGGGCTTGTCCA
TCCCTCCTTTTTGTATGGGTTTTTTCAATGGAACAACACATTGATTGACC
CTATTGATAGAAAACGTTCGAGATTTACCTAAATTCTGAAGGCTGGAATT
TGTTTCCTTTACCTTAAGGGATTTATTTTCGCGGTAACTAATTTTCGCGG
AACAAATTTTTGCGGGAACTAATTTTCACGTATTCGGGTGTCTACCGTTA
TTTTTACTGTAAATTCTCTAAAAGTCCTAGATAAATGAAAGAATTTCGAC
AAAAAGTGGGTGTCAACCGCGAAAATTAGTTCCGCAAAAAAACGCCAATT
TTATACCCTCGCACGGCGAAAATCAGTTACCGCGAAAATTAGTTCCCTTA
TTAAGGTATTATGAAAGTAATTCTCATAGTCAGCAAAATTTGATTTAATC
ATGATATTGACGGATGGCGTCGGTTCATTTTGGACTCCAAGAAAATGTGC
TGATTTACTGTGTGTAATCTGTTTCCGTCTACTTGCTTTGACCATTGGTT
ACTAAATTGCTCTCTTTTTTTATGATTCTTTCAGATTTTAGATTTGATGG
AAGGACGTCTCTTTTACACTTTACACGGCCACCAGGTGAGTTGTTTTTCA
GGTTACACTTTTTTTTCTTATAAGCAACCCCTGGTTGATAAGCAACCCCT
GGTTGATAAGCAACCCCTGGTTGATAAGCAACCCCTGGTTGCTAAGGCTC
GAGCCTTCAAATTAGCCGATTTTTTTCACTATAAAGTTTTTAAATAATTT
AACCTTGGCAAACGATAGCCCTTGTCCCAATAAGCATGAGTATGGTATGA
TATAAGGGATGTTCAATGCAAATTCTCCAGAAAATATATTTATATTTCAG
GTTACACATTTTTTTTTCTTATAAGCAACCTGGGTTGCTAAGCCTCGAGC
CCTCAAATTAGCGGGTTTCTTTTTCACTATCTTGTAAAGTAAAATTTTTA
AAAATGATTTAGCCATAGCAAACGATAGCCCTTGACCCAAATCAATAAAT
ATGGTATAATATCATGGTTGTTCAAAACAAATTCTTCAGAAAGTGCGCTA
TAATGCTAAGCAACCCCAGGGCTGACCCGAAAATTGGAGTTATAAAAAAA
TCTTTATAGACAAGAGTTTACTACTTTTGACTGAACTTCAGCTTTCTGAT
GATTTTGATGGCGCTGAGTCCCAGACTAGAGGATATTAAATTAAATGAAG
GAAGCGCTCAAGGAGGTTCTTCTCCAGCGTACTTAGAACATACCCTTGAC
GTGCCGCAACTTTCTGTATCGTTCCATTTTACTTGAGTGCTACATTTTAT
TTGTATTTTATTTTAAAGTTGTTTGTAATGATATATTTCTTCGTCCTGCT
TGTAATTTGCATTTTGGTCTAACTAATTTATGGTTCTGTACTTAAAATAT
TTTTCAAATTGGCTGTCAGTAAACTTACCAATGTTTATTTGATAGTGACT
GTGATTTTGGGATAATTGAAAAGATGATCGCAAACGAAAAAATGACAATT
ATCCTATAATTAATGATAACGAATAAGAGAAAAACATGTTATAATTACTA
TATGTTATATCACATTTTTAATTTTACTGACTTTTACTGACTGAAAAATT
TTCAGCTCTCAAAACTATTATATTTTTAGGGTGGAGCAAATTGCGTGAAA
TTCAGCCGTAATGGCGAATATTTTGCTTCTGGTAGTTCCGACGAACAGGT
GCTCTTTCTTCATCCGAATTTTATTCAATGTTCACAGTTTTCCGTCTCAG
CGAAGTATAAAAAGAGGCCCTTCCGCCTTAGAATTTAGCAAAATTCAGTA
AAATACAGTTGACGCTCTCTAATTCAATCTTCAAGGGTGATTTGATTTTT
ATCGAATAAGGGTGCTTATCGAATAAGGGTGCTTATCGAATAAGGGAGCG
TTGTTTATGAGAGTTTCTTGTTGACGGGGACTTTAAATTTCATCGAATAA
GGGAGCCTATCGAATAGTAGAACGTCGAATTAGAGAGCGTCAACTGTATT
GAAAATTTGTCGCGTGTTGATGTCAATTTTCCGTCTGAGATGAGAAAACT
TTGCTTTGGCTCCTGACTATTAGCTTTTATTTTGTTTGGTTTTGCTTTAC
CTAATCATCTGCCAATTTTTTTCCAAAGTCGAAATAGAATTGAATTTGAG
ATATTCAATTTTTAGTCCTTCCTTACCTAATCCTCTGTTAAAGGGATCAA
TCACTTTCAGATCCTTGAAATGTAGATACCGTCTAAGTAAGGTCCTCAGC
ATATCATGTTCAATTATTTTCCAAAGTTGAAATAAAGTTAAAGTAGAGAT
ACTGTTAACTCCAATACGATCTTCAAGGGATCAAGTATTTTCATCAAATT
ATAGAAAGATTATAAATTATAGATCACGGAAAGAATTTTGGATGACTTTC
AAACTCAAGGGACCAGAGAATGTTTTCGTTCGAATTACAGAATGATTCCA
ATAATAGAGGTTCGAATCAAATGGAGTTGACTATGTTTAAGTTTGAAAGA
ACCCACTACCTAGAAATTTCAAAGTTTGACTACGGGAGATACAGTAAGCC
CTCTCTAATTTGAACCTACATACATGGTCCCCTCATCTGAAATATCGTAT
ATAACACTCCCTGTAATTCTATTCTTTCTGTAATTCGAACTAAAATATTG
GTCCTCTTCGCTAAGAAAGTGGCGTAAAATACTCTTTGTAATTCGAATCT
TTGTAAAATTCGAAGAAAATTTTTGGTCCCTTGAAGATCGTATTAAAGAT
AGTCAACTGTGTACTATTTTTACCATTATGTGTTTTTCAGGTTATGGTTT
GGAAAACGAATTTCGACACAATTGATTATTCGCAAGGTAATGATAAAAAC
ACGCTAGCTTTTTTCCCTAAATTTTTTTCCCTAGGCTTTTCCCATAAATC
GGCCATTACAAAGTGCTTCAAATAAAATTCGTTTTTTATTTAAGCTTTAA
CCAATAAAAGATAAAATACACTCTTCTCGAAATACATAAAATAATTGCGA
ACCTCGTTCTCAAAGGCTTGTTGCTACGATACTTTAACGTCGCCAGACAT
AAGACATAATTAATGTTGCAAGTGTTTTGTATCGAAATTGAAAGCAGTCT
TTTAGGAAAACATATTACATGTGTAAATGTCGTTTAAAGTAATTATTTCA
TTTGAAAACGAGGCCTGTGTGTACTTTTAGGTTCCAAATAAATGGGGGGG
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGTTGGAAATTTTTT
GAAAAATTGACAAGCGGGGGGGGAGGTTTTATTTGGAACCTAAGAGTAAC
GATGTTGATTTATCTCGAGAAGTGTGTATTTTAAAGATGACACAGACTCT
ATCAGACATTTGCCAGCCACTGACTAGACATTTTGTTAAAGATTGACCAA
CTTTACGAACAGATTATGTAAGATGTTTACACGAACATCATTTTCAACTT
ATTTGATAAGAACAAACTATATAAGAACATATGGCTTCGATGGATAAGGA
ACTAAGAACAAGTTAAGAACATTTTAAGGTTTTGCGGACTCTAAAACACC
AAATTTCTTAGGAAAAGAGACAAAAATACTCACAAAATGGTGAAAATAAG
AACATGTTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAACATT
CCAAGGCTTCAAAAATTTTGGATATTCTTATAAAAAAACGTGTAGGAGTC
TCTTTTAATCCTTATTAGGGCCGATTAGGGCCGTGAGATCACTCCCTTAA
TTTTGAATAAGATGATTAAAAATATTCTGAATTTGAAAAAATTACTATTT
GAAACAATAGGAAATATTTATTAGCTGATATTTTTTAATAAATTAGGGCC
TTCCACTTTTGTATCATCCGCCCCTCCCTAAAGCCTTTCACATTTGTATA
AAACCTGGAAACTTGCCATGAGAAGAATATTCTAACACATCAGGAAAAAG
TAAAAGGGAAAAGATCACTGTCTTGAAAATCTTGCCAAAATGGTCAAGTT
ATCACGCATGTATTCTGAATGTCACCGCCACGACAATTTCAACGTTACAG
TTCTGCACGCCCATCGTAAGCGAAGTGCAACGCCCTCAAGCCACACGCCC
ACCGCCTCTGTAGACGCCCGGTCAACGAATAGAACTATTGATGAAGACTC
GACTGCGGTATGAATTCGTTTTCCTCCCTCTTATTTTCTTTTCTTTGCAG
TTCTTTGAATTAAAGTGTTCTACTTTCATTTGACATTCATTTCATTTGCC
ATGCGCACTAGTCCTGCCATACAATCAGTACGGCAGGGCTGCTTCGCATA
GCATAAAAAACAAAACCTCCAATATTATTTTCTACAGATTATTTTTGTTT
CAGTTTCTTCCAACGGATATCGTCCTACGTAAGTGACATCATGAAAAAAA
ATTAAGTCTTAAATTTTTAAGCTAGAGTGAGAGAAGGACAAACATTATTT
CTCCTCTCCTCAGATCAATGGTTTTTCGAAGCCTGTGACGCAAAATGGTA
CTGGGAACGATTCTGATGACGTCATGAATGTTGGACCGGCTTTGTTTTCC
ATCCCTCAAGTAAGTCTTTTTGTTTGTGGATGAGTAGCTCCTTGTTATAC
ATAGGTTAAATGTTTGATTCCGGACCGTTGACAGCTTAGCGAAAGGGTAG
ATGGGTAGATAATGATCTAGTTATCTGATCTATGTGGTATATTGGACTTT
TCCAGACAAAAAATTTACCCCCACTGTTGAGAATATTAATTTTTCAAAGT
ATCGAACTCCCTGGATAATCCTACTTTATTAGTAAAGACCCCCTGGATAT
CCACTCTTAAAAATATGCTCAACCCCCTGGATATCCTCTCTTATAAAGAT
GCTTACCCCTGGTTTTCGTATTTTTTACTTGAAAAAACACTTAACCCCGT
GGATATCCGCTCCCTTGTAGATATTTAACCCCCTGGATATCCACTTTTGA
ACAAAAATCGTTAACCACCTGGATATCCGATATCCACAACACGGGCACGG
GCTATTTCTGCAAAAGCCCAATATTAGAAGCTCATGATGTTTTGAGCCTA
GTCTAGTTTTTACATGCTCTTATGCCTTCTAAACTCGATATTTCAATTCA
TCAATGTTTAAGGGGGAGACTAGTCTAGCTTTGCTTATGCCTCCAAAATA
TAATATCCGAATTGTATCTCTATTTTATAGCCTAGTGGAAGAGACTACTC
CGAGCTTGCACGTCCAGCGTCTTCAAAGAACGGACAAGTGGGTGAGATTC
CGACCACAACACCGCTCGAGAGACGTGATATTCCGCCACAGCTGTCGGAA
ACATTGGAGCATATTGTCGGACAACTTGATGTTATCACCCAGGTAGGATG
CCAATGGGCCTTTCCATTTCATATTCATGCAGGGTGGGGTGAACGAACAT
TTCCCCCTGTGATGTAATCTGAGAAAAATGTCAAACGGTCCCTTTCTACA
CAGGGGGTAAAGTTATTCTAAAACTTTCAGGGGTTAACAGACACTGATTT
AAGCACGTCCACCCTGGCTTTAATATANCTTTCAGGGGTTAACAGACACT
GATTTAAGCACGTCCAGCCTGGCCTAAATGTGTGAAAAAGAATTTTTCCG
AGGGATTTTTTTGGAAATTTTACCATTTTCCAGGGGGTATCCACACATTT
TCAATAACTTTTTTTTGACTTGAAAAGTTTCGTCCACCCCCCCTGTATGG
ATATTAATGGGTACAACCCAATGTTGACCCTACTTCAAAACTTTATTGCA
TTTTTTTCATCGGTTTTGATACTTGAGCTATAAACCAAGGAAAACTTTAT
TTTTACCTACTTTGCTATCCTTGGTATCTAAGCTACTTGCATTGTAAGTT
ATAGTCAGTCAGTAATTAGTTGAAATTTTATCTCAGCCCAGCTTGCTTCA
ATATTCCTTTTATCATTAGGGACATTTAGGTGGTTTGAGATTTTTGACAT
GCAGAGTTCTTTCACAGTCCTCAATAAATCTTGTTATCTGATTATTCTCC
AAATTTGAGATATTCGGGTTACAAGCTTTTTACTTTTAGCAAGAAAACAA
CAGAACTTTAACGTGAGAAGCTTGAAAGAACTCAATTTTATAGAGATTTC
AAATTGTCATAACTCAACAATATTCTGAGATTTGACTCAAACCATTGGTG
GCTTCTGCAGTCAAAATATCACAAATCATCTGATTACCATTTTACTCGAG
TATAGACGGCCGACTTTCTTGCCTTCATTCAATGCGAGAAACGGCAGAGG
GTCGACGAGGAGTTGAATGTCTACTGTCTAAATTAGAGCTAAATGAAGAA
CTTTAGACGGACATTTGAAGTGAAATCTTTTCCGATATCGTAGGAGGCTA
ACCCTCAGACAAAATTTAACGTCAGTCGTACAGAACGTCAAAAAAACGCT
TGTTTACCGTCGTCCTCAGCCGGTCAGGATCTAGCGAAATCAAAACATCT
CCGTAGCAAAAAAACACACATACACAAAATCTTACTGACTCATTACTCGT
TTCAATTCTTTTTTTTTTTTTCAGACTGTGTCCATCTTAGAGCAGAGGTT
GACCATGTGCGAAAACAAACTACGAGATTGTCTCGATAACCAACACCGTA
TTTCTTTACAAATCAAACCAACGTGATGGGCTAGCAAAACAAATTACACG
CGGGAAGAGGTTTGATTTATATACGATGAGTTATTGAAGGAAGGGGTGCT
TAATGTAACGAAAAGAATATCAGAAAGTATGTTTTTACAATTCTTACGTT
TAAGTTATCTTACACGAATTCTGGCGTCAAAACGTTCTGAGTAATAGATC
CCTGTAATAGATCTTATCGGAATTTTTTGATTTTTCTAAAGAAGCGATGC
ATTGTGGGATTGTTTCAGGGGTATTACAATAGAAATCTCTTAGGAATTCC
TCGAAGGAATTCTATTGCAATACTCCCGAAACAATTCCACAATGCATCGC
TGTTTTAGAAAAATTAAAAACTCCGATAAGGTCTATTACTTCATCAGTCT
ATTTTCGCCTGTGAAAGTTTCGGGTAAGATAGTAAGGGGGCCAACCCTTA
GGACCCGCAGTATCTTTCATGAGAGGTCACTGCATGTGATTTTTTGACTG
GGGGCCAGCGAATTAGGCCTGGCAAATCTTTTTATGTTTAAAAACGTTAC
TGGCAAAACACCTTGGAACTAATTTTTGCGGGAACTAATATTCGCGCTCG
AAAAAAAATTTGTGGGTTTTTTGTGGGTTTTGCCACAATTGATTCCCGCG
TTTATTAGTTATAATTAGTTCCAATAAAGGCAACTCCCTTTATTAAATTC
TCTAAAAGTATTGAGTCCC

Coding sequence (CDS) from alignment at sc0000024:279199..291717-

>TCONS_00002994 ID=TCONS_00002994|Name=TCONS_00002994|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0000024:279199..291717- (Clytia hemisphaerica)
CGAACATCCAAAGAATGCACTCACACTTTTTACGAATATGGAGGGTTTGT
GAATCACGTGGAATTTCATCCCAATGGCACATGTATTGCAGCAGGTGGCT
CGGATAATACTGTCAAAGTTTGGGATATACGCATGAACAAGCTACTGCAA
CACTATCAAGTGCATGGAGGAGCGGTCAACTCGTTATCTTTTCATCCAAG
TGGAAACTACCTCGTATCCGCATCTGCAGATAATACTCTCAAGATTTTAG
ATTTGATGGAAGGACGTCTCTTTTACACTTTACACGGCCACCAGGGTGGA
GCAAATTGCGTGAAATTCAGCCGTAATGGCGAATATTTTGCTTCTGGTAG
TTCCGACGAACAGGTTATGGTTTGGAAAACGAATTTCGACACAATTGATT
ATTCGCAAGTTCTGCACGCCCATCGTAAGCGAAGTGCAACGCCCTCAAGC
CACACGCCCACCGCCTCTGTAGACGCCCGGTCAACGAATAGAACTATTGA
TGAAGACTCGACTGCGATCAATGGTTTTTCGAAGCCTGTGACGCAAAATG
GTACTGGGAACGATTCTGATGACGTCATGAATGTTGGACCGGCTTTGTTT
TCCATCCCTCAACCTAGTGGAAGAGACTACTCCGAGCTTGCACGTCCAGC
GTCTTCAAAGAACGGACAAGTGGGTGAGATTCCGACCACAACACCGCTCG
AGAGACGTGATATTCCGCCACAGCTGTCGGAAACATTGGAGCATATTGTC
GGACAACTTGATGTTATCACCCAGACTGTGTCCATCTTAGAGCAGAGGTT
GACCATGTGCGAAAACAAACTACGAGATTGTCTCGATAACCAACACCGTA
TTTCTTTACAAATCAAACCAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001641XLOC_001641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002994-exon-sc0000024-1575043694:291674..291717TCONS_00002994-exon-sc0000024-1575043694:291674..291717Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:291274..291346TCONS_00002994-exon-sc0000024-1575043694:291274..291346Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:289965..290007TCONS_00002994-exon-sc0000024-1575043694:289965..290007Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:286984..287066TCONS_00002994-exon-sc0000024-1575043694:286984..287066Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:286133..286183TCONS_00002994-exon-sc0000024-1575043694:286133..286183Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:285020..285088TCONS_00002994-exon-sc0000024-1575043694:285020..285088Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:283882..283927TCONS_00002994-exon-sc0000024-1575043694:283882..283927Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:282361..282467TCONS_00002994-exon-sc0000024-1575043694:282361..282467Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:281959..282054TCONS_00002994-exon-sc0000024-1575043694:281959..282054Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:281176..281337TCONS_00002994-exon-sc0000024-1575043694:281176..281337Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1575043694:279199..279993TCONS_00002994-exon-sc0000024-1575043694:279199..279993Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:291674..291717TCONS_00002994-exon-sc0000024-1510915933:291674..291717Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:291274..291346TCONS_00002994-exon-sc0000024-1510915933:291274..291346Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:289965..290007TCONS_00002994-exon-sc0000024-1510915933:289965..290007Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:286984..287066TCONS_00002994-exon-sc0000024-1510915933:286984..287066Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:286133..286183TCONS_00002994-exon-sc0000024-1510915933:286133..286183Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:285020..285088TCONS_00002994-exon-sc0000024-1510915933:285020..285088Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:283882..283927TCONS_00002994-exon-sc0000024-1510915933:283882..283927Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:282361..282467TCONS_00002994-exon-sc0000024-1510915933:282361..282467Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:281959..282054TCONS_00002994-exon-sc0000024-1510915933:281959..282054Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:281176..281337TCONS_00002994-exon-sc0000024-1510915933:281176..281337Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1510915933:279199..279993TCONS_00002994-exon-sc0000024-1510915933:279199..279993Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:291674..291717TCONS_00002994-exon-sc0000024-1491911889:291674..291717Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:291274..291346TCONS_00002994-exon-sc0000024-1491911889:291274..291346Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:289965..290007TCONS_00002994-exon-sc0000024-1491911889:289965..290007Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:286984..287066TCONS_00002994-exon-sc0000024-1491911889:286984..287066Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:286133..286183TCONS_00002994-exon-sc0000024-1491911889:286133..286183Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:285020..285088TCONS_00002994-exon-sc0000024-1491911889:285020..285088Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:283882..283927TCONS_00002994-exon-sc0000024-1491911889:283882..283927Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:282361..282467TCONS_00002994-exon-sc0000024-1491911889:282361..282467Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:281959..282054TCONS_00002994-exon-sc0000024-1491911889:281959..282054Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:281176..281337TCONS_00002994-exon-sc0000024-1491911889:281176..281337Clytia hemisphaericaexon
TCONS_00002994-exon-sc0000024-1491911889:279199..279993TCONS_00002994-exon-sc0000024-1491911889:279199..279993Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Poc1TCONS_00002994-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:279199..291717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.71081	5.79952	47.8066	59.6427	22.5694	18.0138	9.42429	9.11446	7.0249	7.94315	5.973	3.55284	2.99022	2.68725	5.30299	6.35816	11.1287	8.25392	1.72059	1.36918	3.52205	3.6492	10.4883	9.10575	16.6368	16.8517	2.34413	1.42083	6.54253	6.56727
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00002994 vs. Swiss-Prot (Human)
Match: POC1A (POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 7.018e-87
Identity = 144/290 (49.66%), Postives = 178/290 (61.38%), Query Frame = 1 
Query:    1 RTSKECTHTFYEYGGFVNHVEFHPNGTCIAAGGSDNTVKVWDIRMNKLLQHYQVHGGAVNSLSFHPSGNYLVSASADNTLKILDLMEGRLFYTLHGHQGGANCVKFSRNGEYFASGSSDEQVMVWKTNFDTIDYSQVLHAHRKRXXXXXXXXXXXXVDARSTNRTIDEDSTAINGFSKPVTQNGTGNDSDDVMNVGPALFSIPQPSGRDYSELARPASSKNGQVGEIPTTTPLERRDIPPQLSETLEHIVGQLDVITQTVSILEQRLTMCENKLRDCLDNQHRISLQIKP 870
            ++S+EC H++ E+GGFV +V+FHP+GTCIAA G DNTVKVWD+R ++LLQHYQ+H  AVN LSFHPSGNYL++AS+D+TLKILDLMEGRL YTLHGHQG A  V FSR GEYFASG SDEQVMVWK+NFD +D+ +V    R                                    P T   +  +  +V          P P GR             G+  E   + P E   +P  L+ TLEHIVGQLDV+TQTVSILEQRLT+ E+KL+ CL+NQ  I  +  P
Sbjct:  174 KSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPR-----------------------------------PPATLASSMGNLPEV--------DFPVPPGR-------------GRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQCLENQQLIMQRATP 407
The following BLAST results are available for this feature:
BLAST of TCONS_00002994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POC1A7.018e-8749.66POC1 centriolar protein homolog A OS=Homo sapiens ... [more]
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