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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003008 ID=TCONS_00003008|Name=TCONS_00003008|organism=Clytia hemisphaerica|type=transcript|length=4950bpRun BLAST on NCBI protein sequence of TCONS_00003008-protein >TCONS_00003008-protein ID=TCONS_00003008-protein|Name=TCONS_00003008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1046bp MDFDDDMDDLDQILSNLPSEDTINKADDSADELLDILMDEPPPTITKPNIRun BLAST on NCBI transcript from alignment at sc0000024:580111..627004- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003008 ID=TCONS_00003008|Name=TCONS_00003008|organism=Clytia hemisphaerica|type=transcript|length=46894bp|location=Sequence derived from alignment at sc0000024:580111..627004- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:580111..627004- >TCONS_00003008 ID=TCONS_00003008|Name=TCONS_00003008|organism=Clytia hemisphaerica|type=CDS|length=3141bp|location=Sequence derived from alignment at sc0000024:580111..627004- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003008 vs. Swiss-Prot (Human)
Match: MCM10 (Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=1 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 1.973e-46 Identity = 126/389 (32.39%), Postives = 202/389 (51.93%), Query Frame = 2
Query: 755 CGYEFVGISIRNPMISSAVLDERMKGRRVIKISHIESKMKNYDIEG-DWVTMGVLVDKMPQKTTSNGKNFSVWKLSDLGMGSENVLMAFFLFGEVNKEHWKTQNGAVIALLNPSITKRKE-DNSISISIDNPKKLMEIGTSRDLATCKGVRKSDGRSCTMFINKQYGDYCEFHVQKAFKKAKAGRMELQSGGSKG------PRNGTTSKNQKGHLMNDMKKSIDMGDYHYGGKTLSLSENKKRNNVKLQKTSNXXXXXXXXLRSIVSSDVKALAAKDLQETKMKREKQKLELQGGTEEFKELLNVPTVGARNL-HKLLKGDQVKEEEIKVPKSKCNSARSFLRNTKQ---------------EFLQTNPQLNRNLSPSIPKPDPAQKKR 1849
C F G+ +R P +SS ++++M GR++I++S I+ KM +E DWVT GV++ K+ ++ ++GK FS+WKL+DL ++ V + FLFGEV+K WKT+ G V+ +LN + K K+ + +SID+P+K++ +G + DL TCK +K +G CT +N + +YC++HVQ +KK A R +LQS S G R GT+ +K+ + ++YGG + + V +K +++ +S+ V +QET+ K + L +EEFKEL+++PT GARNL L K P K SA + L+ KQ FLQ++ ++ PS + PAQ R
Sbjct: 246 CVEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTPQSVNSGKTFSIWKLNDLRDLTQCV--SLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKA-KKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFARRGTS-----------LKERLCQDGFYYGGVSSASYAASIAAAVAPKK----------KIQTTLSNLVVKGTNLIIQETRQKLGIPQKSL-SCSEEFKELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASALLKQQKQRMLEMRRRKSEEIQKRFLQSSSEVESPAVPSSSRQPPAQPPR 609 HSP 2 Score: 127.487 bits (319), Expect = 2.212e-29 Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = 2
Query: 2552 IQKIRSKGGI----HDNEDKKNKQ--QTSEHIKARLE-NSLDKSNDEGAGDENDEVPKKKRKKGLLQDIFGELDPNSEEAIKLHKAKSKNVGAVRLAEAEREDKYFAALEKKEAMEQKMINTTEIKVRLYACKVCNYKAESLLKKCLDEKHLHVKLPDRIKRFFACKNCKHKAIGYDCLLPKNPCSKCGGTSFERSSMVNERKGPKMGAETLELRGREQ-KYANSL 3205
I K+R+KG + + N KK ++ Q +K R+E N++ S E DE + KK+R++ L+ SEE K+ KAKSK+ G ++ AEAE +++YF L KKE ME+KM N E+K R+ CK C Y LL+ C+ E+H D +KRFF C C +++I D LP CS CG +ER M+ E+ GPK+G ETL RG E K+ NSL
Sbjct: 663 ITKLRAKGQVLTKTNPNSIKKKQKDPQDILEVKERVEKNTMFSSQAE---DELEPARKKRREQ------LAYLE--SEEFQKILKAKSKHTGILKEAEAEMQERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQH-EYHWHDGVKRFFKCP-CGNRSISLD-RLPNKHCSNCGLYKWERDGMLKEKTGPKIGGETLLPRGEEHAKFLNSL 874 The following BLAST results are available for this feature:
BLAST of TCONS_00003008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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