TCONS_00003018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003018
Unique NameTCONS_00003018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003018 ID=TCONS_00003018|Name=TCONS_00003018|organism=Clytia hemisphaerica|type=transcript|length=1214bp
AAATGGGTTGATTACGTTAAATCAAGATCTTGCTGCTGAAGATGTTTGGA
AGATCAACCAGTACAGTGTAATAACCGGTTTCGTTGATCCAGGATGGAAG
GACTTCAGAAAAAATgaCGGATTAAATTTTCGTGAGATCGATAATTTTGG
TTCCACGTTTGACCTTTTGACTCTCCGAATGTTGAACGAAGCAGTATCCA
AATATCTTGGTGAAGATGAACCATTTCATGGGACAGGTGGTCTGGTCATT
ACTTTCAACAGTATAAACAAAATGGTATACCAAGTGGCGATCGTCTCCAA
CTATACACAAACCTTTGTTGTGATGAATTTGCTGGAGCTAGGTCCGTACG
GTTTCCACGGAGTATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTC
ATTTCTCAATATGCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGG
TGTCTCTGGACAATATGTGTATCCCCTGACAGACAGGTTGTGTATAGACC
CATCTACGatcacaacaacaacaacaacaacaacaacaaccacgaCCACG
ACCACGACCTTCAACACCTCTACTCATACTAATAAACCATCTTTAACTTC
AACACTATCGCTTCACAACAATACTGTCCCACCTCAAACAACAGAGGACA
AAGAAGAagataatcaccatggtaatgaTTCACTCGCAACAACACAAACG
CCATTGCTGTATTCAACATTATCACCAACCACATCGGGCACCACTTCAAC
CACGCCCTTCAAACGCCCTGGAAATGATGGTAATGGTGGTGAAAATCGAG
TCAAAAGTAAACGAGAAAGTCAAGTATCATCTGAAACAACGTCGATCATT
GGTTGGTCTGTTGGAGCTTTTTCTTTACTCATTTTCTGTATTATTGTGTA
CGTCGTTTTGAAAAGAAGACCACGTGATCAGTTCGAACAAGCCTGATTGG
TCAATGGATTCCACGTGATCATTTCGAACAAGCCTGATTGGTCAATGGAT
TCCACGTGATCAGTTCGAACAAGCCTGATTGGTCAATGGATTCCACGTGA
TCAGTTCGAACAAGCTTGATTGGTCAATGGATTCCACGTGATCAGTTCGA
ACAAGCTTGATTGGTCAATGGATTCTAAGATTCCACTACTacttttcttg
gattttttcgctttttaccCCAGTATAGCCGGCCGGCCGGCCGGAGATTG
GAAAGGGTCTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00003018-protein

>TCONS_00003018-protein ID=TCONS_00003018-protein|Name=TCONS_00003018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
NGLITLNQDLAAEDVWKINQYSVITGFVDPGWKDFRKNDGLNFREIDNFG
STFDLLTLRMLNEAVSKYLGEDEPFHGTGGLVITFNSINKMVYQVAIVSN
YTQTFVVMNLLELGPYGFHGVSNPHCPYPMVNFISQYADVVALKDGSNNG
VSGQYVYPLTDRLCIDPSTITTTTTTTTTTTTTTTTFNTSTHTNKPSLTS
TLSLHNNTVPPQTTEDKEEDNHHGNDSLATTQTPLLYSTLSPTTSGTTST
TPFKRPGNDGNGGENRVKSKRESQVSSETTSIIGWSVGAFSLLIFCIIVY
VVLKRRPRDQFEQA
Run BLAST on NCBI

transcript from alignment at sc0000024:817498..820888-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003018 ID=TCONS_00003018|Name=TCONS_00003018|organism=Clytia hemisphaerica|type=transcript|length=3391bp|location=Sequence derived from alignment at sc0000024:817498..820888- (Clytia hemisphaerica)
AAATGGGTTGATTACGTTAAATCAAGATCTTGCTGCTGAAGATGTTTGGA
AGATCAACCAGTACAGTGTAATAACCGGTTTCGTTGATCCAGGATGGAAG
GACTTCAGAAAAAATGTAAGAAGTAAATTTATGTCTTGAAGCTAACCTTT
CCCTTGCCTGTACCAGACGACCACGGCTTTTTCCCATAGATTTATAAGCC
GAAAGGGCTAGATGTCGGGCTTTAAAAATCCGCGAAGCTTCTGATTGGTC
AAGCGCTGAAATTCTATTGTAATGTCACGTGACTTAGGTAGGATTTCCTA
ACTAACCACGACACACATTCCAGCAAATGCTTGACATCTAGCCCTTCGGG
CTTTATAAATCTATGCTTTTTCCTCGACACCGTTCCGTATGTTTCATTTA
TCCCCTAGAGATCCTTTGGGGAATAAAAATACTCGGCTTCAAGCCAATGG
ACCGTAGCAAAAACTCTACCAATAAAATTTGTCACCGCGAATACTATTTT
AACCTTTCAAGTGAAATAACCTGTTAGTGAGCTAAGGGACTGGGTTCGAG
CTTAGTTGTTTGTTACTATTTGTTTTTTTAAGGACGGATTAAATTTTCGT
GAGATCGATAATTTTGGTTCCACGTTTGACCTTTTGACTCTCCGAATGTT
GAACGAAGCAGTATCCAAATATCTTGGTGAAGATGAACCATTTCATGGGA
CAGGTGGTCTGGTCATTACTTTCAACAGTATAAACAAAATGGTATACCAA
GTGGCGATCGTCTCCAACTATACACAAACCTTTGTTGTGATGAATTTGCT
GGAGCTAGGTAAAGGACAAAAGTTTGTGCTTTACACGGAGCTGTCTCCAA
CTATACACAAAGCTAACCAACGGGAAACCGTTATCAGGGTGCAATTAGTC
CTGATTACCAATAAAATCCATTTCGACTGTGAAGTAGCCTATGCTAAAAA
AAGCTACGCTCTACGACAGAGACATCCAGAGATTTGCGTAAAAATATCTT
GCAGACACCGAATGATGCCTAACCGTAACAAACAAACTTTGCGCTATATT
TTCAGTCAGCGAAGAAGAGTTTGGTATATGCTAACTGTAGCTTATTTCTC
TACCTTTTACACTGATACTTTTACCTCAGGTCCGTACGGTTTCCACGGAG
TATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTCATTTCTCAATAT
GCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGGTGTCTCTGGACA
ATATGTGTATCCCCTGACAGACAGGTTGTGTATAGGTATGTCAAGTTCTC
ATATCTCAATTAGTACAAAGTGTCGCTTCAACATTAATCTTTATATTTCC
CGTTTGTGAAATTTAAACTAACGTTAGAATAATGTCATGTGTGTCCTTTG
GTCGCTCTTTTACTTTTTTTTCTGGACGTGGCATCATCATACATTCAATT
CATGGCGAATTTTTCTTTTTTTTAGATTGTGTATTAGTCAAAAATTAATC
TGTTGCATAACCAAAGCTTAAGGTCTTGTTTTGAATATTATCCCTCAGTA
TACCAGCAGATTATTTATCATAAAGCTTCAAGACATTTCATATATATTAT
ACAGAACTTTCATATATCATTATTGTTGTTATTATTAGCTTATTATAAAC
ACTATTTCATTAAGACCCATCTACGATCACAACAACAACAACAACAACAA
CAACAACCACGACCACGACCACGACCTTCAACACCTCTACTCATACTAAT
AAACCATCTTTAACTTCAACACTATCGCTTCACAACAATACTGTCCCACC
TCAAACAACAGAGGACAAAGAAGAAGATAATCACCATGGTAATGATTCAC
TCGCAACAACACAAACGCCATTGCTGTATTCAACATTATCACCAACCACA
TCGGGCACCACTTCAACCACGCCCTTCAAACGCCCTGGAAATGATGGTAA
TGGTGGTGAAAATCGAGTCAAAAGTAAACGAGGTGAGCACACCACGTTGT
TTCAACGTTTATTCAATGCAATATTCACAACGTCCATATAACGTTAAGTG
AAACGTTGAAATATCGTTGTGTTCAACTTGGGTGACAATACAATTGCTTT
GTTACTTCAATCTTATCAGCACACTTTTAGAAGTAGGATAGCAGACTTTG
TGGTCTTTACATTGTTCATAAAAGGTACACAATTTCCACATAACTTTAGA
TGGACGTTTATACAATGTAGCCAGATGGAAGATATGATATTTCTTTGTAC
AATAGATAGGCACTGTGTGTTCACAGAACTCCCTTTCAAGTATGTTTGAC
TGTTAAGTCAGCTAGTTGTTTTAGCTTCACTAAATTTACGAAGTGACGGT
GACACCAGACATTTTTAGAACCTGAATGGTCAATGAAATGGTCAATTTTC
ACTCGCTGCTCTAGAGCAGCGTTGAAAAAAAGTGGCATTAGGTTCCCTCT
TTTTTCTTTCCCGGCACCATTATCAGCTACTCAATGAAAATATATTTTTA
GTCCATCCAGTTTCATTTGAATAATGTTTTTCAATGCATTTTATTTTCGT
TGATTTCGATAGTGAAAAAAATGGTTTGTTCTTAAACCATTAACTTTCAC
TAGCATCGTGTTACTTTCTTCGGTCCTGTACTAATACAGGCGCAGTAGTG
TAGTGGCCATCGTTCTTGACATCCGTGCTGGAGGTCAGGGCATGATTCCT
ACTGGAAAATTTAGCAAATATTTCGTCTCTGGTGGAAACATACCCTTGAA
TTTCAGCCCAACTGAGAAATCAACTTTCATTTTATCCCCACTCGAAATCC
AATATTCGAAAATTGTGCTCCGAAACCATTCCCACTGGATTCTTTAACCT
TAATCCCTATAGGGATTTCAATAGGAATTTTTATCCCCATTTGAGGAAAA
AGTTCCACCGGGTCTGTGAGGTAGGGATGTGAGACTGGGCATACTTCAGG
ACAAAGTTTTTTACATTCTCTTTTCTTAACTTTCGATTTTAGAAAGTCAA
GTATCATCTGAAACAACGTCGATCATTGGTTGGTCTGTTGGAGCTTTTTC
TTTACTCATTTTCTGTATTATTGTGTACGTCGTTTTGAAAAGAAGACCAC
GTGATCAGTTCGAACAAGCCTGATTGGTCAATGGATTCCACGTGATCATT
TCGAACAAGCCTGATTGGTCAATGGATTCCACGTGATCAGTTCGAACAAG
CCTGATTGGTCAATGGATTCCACGTGATCAGTTCGAACAAGCTTGATTGG
TCAATGGATTCCACGTGATCAGTTCGAACAAGCTTGATTGGTCAATGGAT
TCTAAGATTCCACTACTACTTTTCTTGGATTTTTTCGCTTTTTACCCCAG
TATAGCCGGCCGGCCGGCCGGAGATTGGAAAGGGTCTTTAT

Coding sequence (CDS) from alignment at sc0000024:817498..820888-

>TCONS_00003018 ID=TCONS_00003018|Name=TCONS_00003018|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000024:817498..820888- (Clytia hemisphaerica)
AATGGGTTGATTACGTTAAATCAAGATCTTGCTGCTGAAGATGTTTGGAA
GATCAACCAGTACAGTGTAATAACCGGTTTCGTTGATCCAGGATGGAAGG
ACTTCAGAAAAAATGACGGATTAAATTTTCGTGAGATCGATAATTTTGGT
TCCACGTTTGACCTTTTGACTCTCCGAATGTTGAACGAAGCAGTATCCAA
ATATCTTGGTGAAGATGAACCATTTCATGGGACAGGTGGTCTGGTCATTA
CTTTCAACAGTATAAACAAAATGGTATACCAAGTGGCGATCGTCTCCAAC
TATACACAAACCTTTGTTGTGATGAATTTGCTGGAGCTAGGTCCGTACGG
TTTCCACGGAGTATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTCA
TTTCTCAATATGCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGGT
GTCTCTGGACAATATGTGTATCCCCTGACAGACAGGTTGTGTATAGACCC
ATCTACGATCACAACAACAACAACAACAACAACAACAACCACGACCACGA
CCACGACCTTCAACACCTCTACTCATACTAATAAACCATCTTTAACTTCA
ACACTATCGCTTCACAACAATACTGTCCCACCTCAAACAACAGAGGACAA
AGAAGAAGATAATCACCATGGTAATGATTCACTCGCAACAACACAAACGC
CATTGCTGTATTCAACATTATCACCAACCACATCGGGCACCACTTCAACC
ACGCCCTTCAAACGCCCTGGAAATGATGGTAATGGTGGTGAAAATCGAGT
CAAAAGTAAACGAGAAAGTCAAGTATCATCTGAAACAACGTCGATCATTG
GTTGGTCTGTTGGAGCTTTTTCTTTACTCATTTTCTGTATTATTGTGTAC
GTCGTTTTGAAAAGAAGACCACGTGATCAGTTCGAACAAGCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001651XLOC_001651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003018-exon-sc0000024-1575043694:820774..820888TCONS_00003018-exon-sc0000024-1575043694:820774..820888Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1575043694:820081..820306TCONS_00003018-exon-sc0000024-1575043694:820081..820306Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1575043694:819604..819759TCONS_00003018-exon-sc0000024-1575043694:819604..819759Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1575043694:818907..819224TCONS_00003018-exon-sc0000024-1575043694:818907..819224Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1575043694:817498..817896TCONS_00003018-exon-sc0000024-1575043694:817498..817896Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1510915933:820774..820888TCONS_00003018-exon-sc0000024-1510915933:820774..820888Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1510915933:820081..820306TCONS_00003018-exon-sc0000024-1510915933:820081..820306Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1510915933:819604..819759TCONS_00003018-exon-sc0000024-1510915933:819604..819759Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1510915933:818907..819224TCONS_00003018-exon-sc0000024-1510915933:818907..819224Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1510915933:817498..817896TCONS_00003018-exon-sc0000024-1510915933:817498..817896Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1491911889:820774..820888TCONS_00003018-exon-sc0000024-1491911889:820774..820888Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1491911889:820081..820306TCONS_00003018-exon-sc0000024-1491911889:820081..820306Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1491911889:819604..819759TCONS_00003018-exon-sc0000024-1491911889:819604..819759Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1491911889:818907..819224TCONS_00003018-exon-sc0000024-1491911889:818907..819224Clytia hemisphaericaexon
TCONS_00003018-exon-sc0000024-1491911889:817498..817896TCONS_00003018-exon-sc0000024-1491911889:817498..817896Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003018-proteinTCONS_00003018-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:817498..820888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105904	0.103452	0	0.0782086	0	0.0376187	0.152045	0.424892	0.327224	0.405747	0.0401488	0.393812	0.093911	0	0.100408	0.096088	0.822157	1.03595	0	0.0786218	0.956543	1.20529	1.45885	1.56546	1.09914	0.676521	0.19362	0.206828	0.98038	0.439947
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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