TCONS_00003081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003081
Unique NameTCONS_00003081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003081 ID=TCONS_00003081|Name=TCONS_00003081|organism=Clytia hemisphaerica|type=transcript|length=2833bp
CAACCAGCAACCTTGTAtgtattaaaatttaaaatcaataaCTTCAATAC
TGACAGGATAGcacaaaaaaaaagagtttacCTACTttattttaagaaga
ttttctAAAACAGATTGGTGTAAAGAATGCATTGGTATTTGTTAACAATA
ATTATTATTTCATCCTACCAACAAATGTGCTCCACTGAGGAGACAACAAC
GAATACCTTTGAAGTTACACGAGGCTTCGAAGACAGTTTTAAATTCTTAG
AAAAGCGAGGGCTTGATTGCGAGACGTTGAAAACAGAGGATGATGGTACG
AAAAGTTGTTTGTGTATAGGTATGGATGACAAGAAAACCATGATTTTCGA
AAGAAGTAGGACGAAAACAAAGGCAAAGTGTGAAATGAGCCGCGAAATCA
TGGATAACTTCAAACACGAAGAAATGTTTGGGGGAGGTGGACTAGAGCCA
TTCGAGTTCAGTATTGAGATGAACAAAGAGATTGGTTTGATGAGATGGAA
TGAAAATGAAGGGTGGATTGGTACATACGCCTTATACATCGCGGGTGGAG
ATCGACCTGTGACAGAAAGAGAATGTAAAGATCCAAAGATTGAAAGTGTA
AGTTGTAATAATTTGAAATGGGCGTCCTGCGACAAAGTAGTAGCTTCAGA
TTTCACGATCACAGAGAAAAAGACTGGATCCAACCAAGCTCATTTCGAAT
TCCAGGTCATTTCACttcaaatgaaaatcaaaagcaAATATCAAGGACGT
TTGGTAGCCCTCCAAATGTTATGTGGGATTGAAAAGGCTTTCATGATCTT
CAAGTTTCAAGGAAGGCGGGATTACCCAATTCCAGATTCACCTGTAGTCA
TTTCAACAACCGCAACACCAATAACAGATAATTCAACAACTCAGCCGCAA
CCTCCACCCAAAACAACAATACAAGCCTCTGAAACGACAACCATGAGTTC
TGCAATAACAACAACTTCAGGAAGTGGTAATGGAGACAATAATACAGCGA
GTTTTCCATCAAACACGGTGTTAAAGGTAACTCGTGGGTTACTAGACAAA
TGGAGCTGTCGCGCAGACGAGGAATGTGTTTGTAATGCACCCTTGACAAC
TTACATGATCAACGAAAATGGCACGCGTGGCTGCTACGGATCGGTGGAAA
CAATTGAACGAAATTTCAAAGGGCATGACATTTTCTTATTGGATAATCAA
GTCGTATTTTATGTATCCTGGAAAGATGACGATAAATGGCGTAatccaaa
atcacaaaagatATTTGACATTGATGGCAATGTAGTAACTTCGAATACAT
GTGACTTGAACAGTTTCTTTTCTACCGAAGTTTACAATCATGACCGTTGG
CAAACTTGGAGTAATGATTATTTCAAACTTGATCCGACAGAGAATTCTTC
CGATGGAGGAACCACCATAGGGATTGATaaAGATTACAACGAGAACTTTG
GCGATCTGCAAGGTCACTTGATCAGATTTGGCTTTAAGTGCAACAACAAA
GAAGTTGCTTATttgtttcaaaagtttcaagGAGAAAGAGAGTATTTACC
AGGCAAAGATTTAGCTGAGCCATCCACCGAGCCTTTACTGACAGGTAGCG
AATTAACATTGGTCATTGGCTGCACTTTGGGAGGCGTTGGTTTCATTGGA
ATCATTGTCACTCTTTATATTCTCTTAAGAAAAAGGAGGAGAGATGGAAA
TGAAGAGTTAAAAAATGATCCAAAGTTCAATCAAGAGGATGACAAAATCG
TGATGAGCAAAGCTGACATCATGGAGCTGGCAGAGCAAATCCtacaaaag
cgagaaaagacCGACTTCCAAGGGTCTCCTCGCTACGTTCCTACACATCT
TCCGGATCTACCTGATCCACGCCCCCAGGTGGGTCCCTTGTCTctaaatt
acagaccagaagcAGAGGATCAGAGCAACGGACTGTATCAAGAAATACCA
TACGAAGGGTTGTATTTGAAGCCTCTGGCTGACGAAAGTTATCTTGATTT
AACGACTATACACAAATCAGAGTACTCGCCAAGTATGAGAAGCAATAAAA
GCGAATATGAAATAgaagatgaaattgaaaatcaaattaatagAAACGAC
GACCTTGACGCTGTCGATAAAAGACGGAATATTttaaatgagtcaccgcg
tacTGAAAGTATAGACAGCAACGTTAGTGCTTATGAGCTTGAAGATAAAT
ACTCGCCACAAAACAAAACTGAcacaaaaaacgataaaaacaaCCTTGGT
AAAAGACAGGGTACTTTAGAATTGCCACCGCAGTATACACCTGGGTTAAG
GAGAAGTAGCAGTTTCTATGAGTTAGAAGACGTTTACGCTTCGAAAAGTA
AAAACGATGTCGGAATCGAATCAAACAAACAGCAAAGTATCGATGATATC
GATAAAAAGGATATAGGTTCTGATGTTAAAATACAAATTGAAAATACCGA
ACTTGTTACACCCAATTGAATCATGTTCCCATTCATCACGGTAGATTGAA
AGCGTTGAAGATTGCAAGCAAATAATTTGATCTAATTTGGTcgattctct
ctaattcgattttcgaaaattttattCGAATTGGGGAaagattcgagtta
tagagaatATACAAGGCTTTCCCCTTGACGGGAACTAAGAGTCAGTTCGa
actatagaaagattcgaaagaagttcgaattagctaGAGTTCACTgtatt
aaaaatttaaatttcgaTAGTTAGTTTTTTATTCTTGAATTATCTAATAT
AAGACCCCTTGGTATGTTGATTTCAATGAAAAGCAATTGTAAATATTTGA
TGAAATATACAAATTTTATTGCATTCTATCGAG
Run BLAST on NCBI

protein sequence of TCONS_00003081-protein

>TCONS_00003081-protein ID=TCONS_00003081-protein|Name=TCONS_00003081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=780bp
MHWYLLTIIIISSYQQMCSTEETTTNTFEVTRGFEDSFKFLEKRGLDCET
LKTEDDGTKSCLCIGMDDKKTMIFERSRTKTKAKCEMSREIMDNFKHEEM
FGGGGLEPFEFSIEMNKEIGLMRWNENEGWIGTYALYIAGGDRPVTEREC
KDPKIESVSCNNLKWASCDKVVASDFTITEKKTGSNQAHFEFQVISLQMK
IKSKYQGRLVALQMLCGIEKAFMIFKFQGRRDYPIPDSPVVISTTATPIT
DNSTTQPQPPPKTTIQASETTTMSSAITTTSGSGNGDNNTASFPSNTVLK
VTRGLLDKWSCRADEECVCNAPLTTYMINENGTRGCYGSVETIERNFKGH
DIFLLDNQVVFYVSWKDDDKWRNPKSQKIFDIDGNVVTSNTCDLNSFFST
EVYNHDRWQTWSNDYFKLDPTENSSDGGTTIGIDKDYNENFGDLQGHLIR
FGFKCNNKEVAYLFQKFQGEREYLPGKDLAEPSTEPLLTGSELTLVIGCT
LGGVGFIGIIVTLYILLRKRRRDGNEELKNDPKFNQEDDKIVMSKADIME
LAEQILQKREKTDFQGSPRYVPTHLPDLPDPRPQVGPLSLNYRPEAEDQS
NGLYQEIPYEGLYLKPLADESYLDLTTIHKSEYSPSMRSNKSEYEIEDEI
ENQINRNDDLDAVDKRRNILNESPRTESIDSNVSAYELEDKYSPQNKTDT
KNDKNNLGKRQGTLELPPQYTPGLRRSSSFYELEDVYASKSKNDVGIESN
KQQSIDDIDKKDIGSDVKIQIENTELVTPN
Run BLAST on NCBI

transcript from alignment at sc0000025:143611..153015+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003081 ID=TCONS_00003081|Name=TCONS_00003081|organism=Clytia hemisphaerica|type=transcript|length=9405bp|location=Sequence derived from alignment at sc0000025:143611..153015+ (Clytia hemisphaerica)
CAACCAGCAACCTTGTAtgtattaaaatttaaaatcaataaCTTCAATAC
TGACAGGATAGcacaaaaaaaaagagtttacCTACTttattttaagaaga
ttttctAAAACAGATTGGTGTAAAGAATGCATTGGTATTTGTTAACAATA
ATTATTATTTCATCCTACCAACAAATGTGCTCCACTGAGGAGACAACAAC
GAATACCTTTGAAGTTACACGAGGCTTCGAAGACAGTTTTAAATTCTTAG
AAAAGCGAGGGCTTGATTGCGAGACGTTGAAAACAGAGGATGATGGTACG
AAAAGTTGTTTGTGTATAGGTATGGATGACAAGAAAACCATGATTTTCGA
AAGAAGTAGGACGAAAACAAAGGCAAAGTGTGAAATGAGCCGCGAAATCA
TGGATAACTTCAAACACGAAGGTtagttttatcaaaaaaatataacCAAA
AGCTAGAGTCGAATCTCCTGTGTAGGATTCGAAACCACTTATTTCTTCTA
GCTGCGCGATCCACGTGGCTTTCATACACATAGTAGATTAGAggtaacat
tttgaaaaacgtaaAATACGAATTCAGAGAAAGTACTACATTCAATATAT
CATCCGAAACAGTATAAGAAGCTTTCTCCTCAAATTGTTTTCTCAAAGAT
AAATCTCgtcgaaaaagtgaaaaagtgacgtccGTCAGAGCCCAAATGGG
GAGAACTGACGAAAgttcaaagaaatatttatcCAAAGACAAAGATagaa
ttgaatgtttttttttacaaatacgATAGAAATGTTTGGGGGAGGTGGAC
TAGAGCCATTCGAGTTCAGTATTGAGATGAACAAAGAGATTGGTTTGATG
AGATGGAATGAAAATGAAGGGTGGATTGGTACATACGCCTTATACATCGC
GGGTGGAGATCGACCTGTGACAGAAAGAGAATGTAAAGATCCAAAGATTG
AAAGTGTAAGGTGAGTTATATGAATATGTCAATCTTGCAACCGACTTTCC
ATAATCTCGAACTGTTTTCATTTTAGACAAATATGCTTggctttttttta
tctttctatgatttttattttctctaaCTCAAACTTTTCCTGTCTCGAAT
GGCTCCTAGTTTCTTCCTAGCCTTTAAAGGTGGTTCGAAGACTCTTAGAA
ACCAAAAGTGTCATTGCTACGATATTATTTTCCTTTAGTTGTAATAATTT
GAAATGGGCGTCCTGCGACAAAGTAGTAGCTTCAGATTTCACGATCACAG
AGAAAAAGACTGGATCCAACCAAGCTCATTTCGAATTCCAGGTAAATGAA
TATATACTGAATATTGTTTCcaggggggtacttaggcaaatagagggtac
ggtatgtgccgcccttaacggtaccttttttggacttcaaaagtcccact
aagggtcggaaaaattgaaaaatttcaacttcttacccctgaaagatcga
aatttggtcaaaatttggtcaagattggtcaaatttgtcccgttAAGGTT
CGTAAAAATTCCAAAACTCtcctttgttttcttctttttagtcccggtaa
gggtccaaattCGAAAGGCGGGCGGCACctcccgtcagctcgcaaccccN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNccctagtcccccccccccccggggatatTGT
TGTGGATGACTGCAGTTTAGTCACAAAGATTTCTTTAATCACTGTTCACT
TAGATattaagtttttttcaattaatgAGTCGAATCAGTCAAGCATTTTT
AGTTCTCGAATATTTAATATAAATTATTTCGGTATACTCGGCCCACCTTC
ATAATTTAGGGATTATTAAATTTAGTTAATTGATACAAATGATCGATATG
ACATATCCCATCACTTTTAGGTCATTTCACttcaaatgaaaatcaaaagc
aAATATCAAGGACGTTTGGTAGCCCTCCAAATGTTATGTGGGATTGAAAA
GGCTTTCATGATCTTCAAGTTTCAAGGAAGGCGGGATTGTAAGCATTTCT
TCAAGTTCAACTGCTCCTAGATCCGGGGGGGGGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCtaggtccggggggggggg
tacttaggcaaatggagggtacggtatgtgccgtaTGTGAGGGCACGGta
tatttttggatttccaaagtcccgctaagggtcggaaaaatcagaaaata
aaatttcagtccaactaagggtaggagaaataggaaaattttttaacttt
ttaccaCAAGAAAGatttgtcccggtaagggtcaTCTTGGCCCTAAATAT
TCCCACTACCCCCACTTCATTGTGAAGTGAAAAGGCATTATCGTAAAGTT
GGAGTTTATAGTTATAGTTAGCAACAAACGTCGGGAGGCAAAATGGGAGG
CACGAGCCTTAACAAGCACTCTCTAATCAAAGGATCAATTATTTTAATCT
CCTAAGATACAGTACGTGATTGAGTAACAAATGATTGTGATCTTATCGCA
GTTACTGCATTTGTATATTTATATAACTAGGGTAGATGCAATTATCACAT
ATTTTAGATTCGGTAAAAAGGACATTTAGTAAATTCGAGTAAATGTTCAA
AAAGATTTATGTTCAGATAAATACGTTTTTTGATACAAGATACTGTCGTC
ATAGCTTcaacataaaataaaaaataaaaaagcttcatTATATTATAGGT
ACGAAATGAGGGCTTACTCTCTCTGTCTTCCTTAGACCCAATTCCAGATT
CACCTGTAGTCATTTCAACAACCGCAACACCAATAACAGATAATTCAACA
ACTCAGCCGCAACCTCCACCCAAAACAACAATACAAGCCTCTGAAACGAC
AACCATGAGTTCTGCAATAACAACAACTTCAGGAAGTGGTAATGGAGACA
ATAATACAGCGAGTTTTCCATCAAACACGGTACATCAAGTGTCTACAAAC
TTACATCAAACCAATACCTATGAGTAACTGAGCTTTATAAAAACTCAGGC
ATACtaaaatctttgatcgaagtttttttgaaattggtacaaTGATACCA
ATACTCAACGTGGGTGTAAATGCACCATGAGTCCTAGATCTATTATTCCT
TGTGGGTACTTTTGATATAGCGCCGTTTGACAACCTTGTCCCATGTATCC
CGGGCTTTATTTATGTTACTGGTAAACGCAAGAGAAAGATTTGACCTGTT
TTATCTCCACTGCAGataattttagtaattttagtaattttatGTCTAAC
TATTTGAATTTGATGATACTTGGACTTTATCAGATAAGGGTTGTTCAAAT
TCATCTATCATACACAAATACTCGCAACCATCCAAGTTGGAATTAAATAG
GAAAAGAGCTTGCAATATATATTGATATTTACAGGTGTTAAAGGTAACTC
GTGGGTTACTAGACAAATGGAGCTGTCGCGCAGACGAGGAATGTGTTTGT
AATGCACCCTTGACAACTTACATGATCAACGAAAATGGCACGCGTGGCTG
CTACGGATCGGTGGAAACAATTGAACAAAATTTCAAAGGTATACCTCCGA
TTACTTCCTTGGTCCATACTTGAGCTAGACTATTAAGTATTGAGTACAGT
ATATTGATGTCAAATGCTCAGTAACTAAGGAGGAGTATAAAGGTTAAGNt
ttgatcgaagtttttttgaaattggtacaaTGATACCAATACTCGACGTG
GGTGTAAATGCACCAGGAGTCCTAGATCTATTATTCCTTGTGGGTACTTT
TGATATAGCGCCGTTTGACAACCTTGTCCCATGTATCCCGGGCTTTATTT
ATGTTACTGGTAAACGCAAGAGAAAGATTTGACCTGTTTTATCTCCACTG
CAGataattttagtaattttagtaattttatGTCTAACTATTTGAATTTG
ATGATACTTGGACTTTATCAGATAAGGGTTGTTCAAATTCATCTATCATA
CACAAATACTCGCAACCATCCAAGTTGGAATTAAATAGGAAAAGAGCTTG
CAATATATATTGATATTTACAGGTGTTAAAGGTAACTCGTGGGTTACTAG
ACAAATGGAGCTGTCGCGCAGACGAGGAATGTGTTTGTAATGCACCCTTG
ACAACTTACATGATCAACGAAAATGGCACGCGTGGCTGCTACGGATCGGT
GGAAACAATTGAACGAAATTTCAAAGGTATACCTCCGATTATTTCCTTGG
TCAATACTTGAGCTAGACTATTAAGTATTGAGTACAGTATATTGATGTCA
AATGCTCAGTAACTAAGGAGGAGTATAAAGGTTAAGTGGATCGATCCAGG
AAAAATTGAATCCCTCTCCTATCTTCGGTTAGAAAGCTCCCAAGAAAAGG
AGCTCCGGATCCCCTCTGACAGCAATTACTTAACAACTCTCCTTCTGACC
CAATCCTTTATTGTCATAGGGCATGACATTTTCTTATTGGATAATCAAGT
CGTATTTTATGTATCCTGGAAAGATGACGATAAATGGCGTAatccaaaat
cacaaaagatATTTGACATTGATGGCAATGTAGTAACTTCGAATACATGT
GACTTGAACAGTTTCTTTTCTACCGAAGTTTACAATCATGACCGTTGGCA
AACTTGGAGTAATGATTATTTCAAACTTGATCCGACAGAGAATTCTTCCG
ATGGAGGAACCACCATAGGGATTGATGTAAGTAAAAAGGAGACTGGGTAA
GATTTTGAGTTGACTAGAGAAGGACGATACTTGTCccgcgggtcaaaact
gcgggttttcaatGATTTCAGTCTCTTGTCTGTTCCCACGTAGAACCCGT
TAATTATACAGATTTACAAGCTAGGCTTGCAGTGGGCCTCTAACCGATCT
TTTTTTACACTATTCTTGAATCGTATTTTGAGGGATGGTTTTCCCATGCA
TCGTTTTCTTTGAAGGTCTTGATAGACTTTACTGTAAACGACATTTCTCG
GCAGTCTATTCCAGGTTGGCACACATCTGTAATAAAAGGATTTCGTTTGT
GGTCCGTGGAAACCGTCATTCGTGACGTTAATGGCACAATTGGTACCGAA
AGctaaaaaaaaagtcaacttTAACTTCTTAAATTCCTGGTATTAAATTT
AACTGTTATTTCAGCTTTTGTAAGGTAAACAAAAAACAGGAATGTTACTA
ACTTCAAGCTCCAAAAAAGAATGTGCTTCAAAacttaatgttttttttca
ctttagaaAGATTACAACGAGAACTTTGGCGATCTGCAAGGTCACTTGAT
CAGATTTGGCTTTAAGTGCAACAACAAAGAAGTTGCTTATttgtttcaaa
agtttcaagGAGAAAGAGAGTGTAAGTTTTTCATGGGCATACCTTTGTTT
CGGATTAAAACCCATTTACTTTAAGTATGTTTTCGTGTTTACTATCACGT
GGAAACCATTCTCAAGgggaaaaagtctaatttttgGTGGAACAGGTTCC
ATGTGAATGGACTGTGGTTTATTTCCGAAGCAAAGGCATCAATAATCTTG
AATTCCTCGTAGTATTTGGTTGGTAGAGGAAGGGCAAATGTTTCAAAAAC
CAATTCTTATTTCCATTAATTAGAAGTCTAAAAATACCCTAACACCTAAT
TGTACCCTTTGGTCGATAACCCAAGAAGAAGCAAATCAAGAATTCAAATG
AGACTCAATGATTGTCCTGCCTACTACCCAATGAACACACTCGATTGATT
ATTCTTACATTTTTAGATTTACCAGGCAAAGATTTAGCTGAGCCATCCAC
CGAGGTAAGATTTAATGCCaatgtctcaaaagtatgtagatactttagtt
tagtttttgaacattttttcaacactTATTCATGCTATTTTACaaagtta
tacaccgttggaaagatatttccaaggaaaattctctaaaggataaattt
taattgataaatttttgaaaagctgaaaaatgaagaagaaaaatgaaaat
gaaaaaaaaattttcaactttttaaaagtcATGACATGaattttttcaga
atatttgaACTTTTCCGATTTCAAATCTGTATTTAGATTTTTCCTATCTT
TCTTAGATAAAAAAAGTTACAGCACTGTGAAGgtcatttttgctgttttt
ggtcatttttggccgttttaggcctacagagggCATACTTTGAGACTGAC
TCCCGGAAGATTTAGTTGATATGGCCTAGTAGCAGATATGTGAATTGTGA
TTAAAGATTCGATTTAAGTTCTGATTAAAGCAAATCTCGGCGGCGgtgtg
aaatcaaaacaaatgaaattcGACAAAACTTTAATTCTTTTAGTTATTAT
TCATTTCATTTTAGCCTTTACTGACAGGTAGCGAATTAACATTGGTCATT
GGCTGCACTTTGGGAGGCGTTGGTTTCATTGGAATCATTGTCACTCTTTA
TATTCTCTTAAGAAAAAGGTACGGTTGTCGATAAAGAAAAAGTCCTATAA
GCTTAATCTGAAAAAATGAGGTATGCAGTACCAAgctgtatttttttatt
ttgatgtttttacttACAGCTTGATCTACCAATTAGATGCTTATAAACTC
AGGGTCAGTAAATTTCTACCCTCGCGTAATAATTGAATCGTCGAAATACG
CTTCGTCCCTTCTAATATTGAAATGCATATCACTTTAGGAAGAACAGGCT
CTAAGCCAGaaacattcaaaacaaaattcacaTCCTGTGTCGTAAGCGGT
AAAGTGCACAAACAGGGTTCTAACAGTGTCCAATTTGGAAAATCCAGCTT
GATTGAAAGCGTATCTTTATAATGTCTCCTATTCTACATCGTGTATCCCT
CACTCTTTTAGGAGGAGAGATGGAAATGAAGAGTTAAAAAATGATCCAAA
GGTAATGTTTCGCCTTCTCTTTCCAGTCAGTGTGTGAAGTAGGTTAGGGA
CTTGTTACTCTATGAACTACCTTCGCCTTCTCTTTGCGTAGAGATAAGGA
AGTGcaaaaaatatctaaataatTCCTTCCCCACTACCCTCTTTCATACC
AGCCCTTATTCAAATGTCTTTAAAACCTTTTAAGAAACCGAATATGAGGT
TATTGTATGCCGTTACCTGTTTCTACCTCTAGTGGTTgcaaaaagtattt
tgaaaatttgttattGACTCTNGCCGTTACCTGTTTCTACCTCCAGTggt
tgcaaaaaatattttgaaaatttgttattGCCTCCTTTTTGCTGACTaag
ttttttcttctatttcagTTCAATCAAGAGGATGACAAAAGTAAGATGTC
GCACCTTTCCATATAATAGTGTTTAAGTGATTTCCAATTGCCATTCCAAA
GTTTCtttaactcaaacctctataacttgaaCAAGTTTTTAGTACAttaa
gttaacaatgccttaaaaACCTTGCTCGATAACTCAAAATTCCCTTAACT
CGATCAAATTTgtattccccgtgcgtgttcgagttacaatcatggacaaa
aggtttgtaaacttctgcaatatttgcaaaatacttcaatatcgatcaaa
aacaagttcccaagaggttctgggtgctttccaaacccatccaaagctgt
ctttcaaagtcacccgcTGCAGTTTAACCATAAGGGCTAACCACAAGGGC
TAggttaactggcttacaccagtatcaaaacgctgattttttgttCGTGG
TTCCCTCAAGAGCAATTCAAAAgtaatgcaacgacttcaaaagtattttt
cttaaccccccccctttcagacacattgaagagtcattttgctctatttc
tcatcatttttcactgaaatttcatttgtctacaaccttttgtccatgat
tgtatagTTTCTTCATAGCAAAAAGACCTTTCAAACCATGAACTCAAACT
TAGTATAGAAATTATCTAAAGTCGATCCTTTGACTGAGAAGCCATATGAA
TTCTAAAATCTTGCATAAATTGAGGATTAAAAAACTAACTAACCCTCATT
CCTGCATGTTTCTTTTCAGTCGTGATGAGCAAAGCTGACATCATGGAGCT
GGCAGAGCAAATCCtacaaaagcgagaaaagacCGACTTCCAAGGGTCTC
CTCGCTACGTTCCTACACATCTTCCGGATCTACCTGATCCACGCCCCCAG
GTGGGTCCCTTGTCTctaaattacagaccagaagcAGAGGATCAGAGCAA
CGGACTGTATCAAGAAATACCATACGAAGGGTTGTATTTGAAGCCTCTGG
CTGACGAAAGTTATCTTGATTTAACGACTATACACAAATCAGAGTACTCG
CCAAGTATGAGAAGCAATAAAAGCGAATATGAAATAgaagatgaaattga
aaatcaaattaatagAAACGACGACCTTGACGCTGTCGATAAAAGACGGA
ATATTttaaatgagtcaccgcgtacTGAAAGTATAGACAGCAACGTTAGT
GCTTATGAGCTTGAAGATAAATACTCGCCACAAAACAAAACTGAcacaaa
aaacgataaaaacaaCCTTGGTAAAAGACAGGGTACTTTAGAATTGCCAC
CGCAGTATACACCTGGGTTAAGGAGAAGTAGCAGTTTCTATGAGTTAGAA
GACGTTTACGCTTCGAAAAGTAAAAACGATGTCGGAATCGAATCAAACAA
ACAGCAAAGTATCGATGATATCGATAAAAAGGATATAGGTTCTGATGTTA
AAATACAAATTGAAAATACCGAACTTGTTACACCCAATTGAATCATGTTC
CCATTCATCACGGTAGATTGAAAGCGTTGAAGATTGCAAGCAAATAATTT
GATCTAATTTGGTcgattctctctaattcgattttcgaaaattttattCG
AATTGGGGAaagattcgagttatagagaatATACAAGGCTTTCCCCTTGA
CGGGAACTAAGAGTCAGTTCGaactatagaaagattcgaaagaagttcga
attagctaGAGTTCACTgtattaaaaatttaaatttcgaTAGTTAGTTTT
TTATTCTTGAATTATCTAATATAAGACCCCTTGGTATGTTGATTTCAATG
AAAAGCAATTGTAAATATTTGATGAAATATACAAATTTTATTGCATTCTA
TCGAG

Coding sequence (CDS) from alignment at sc0000025:143611..153015+

>TCONS_00003081 ID=TCONS_00003081|Name=TCONS_00003081|organism=Clytia hemisphaerica|type=CDS|length=2343bp|location=Sequence derived from alignment at sc0000025:143611..153015+ (Clytia hemisphaerica)
ATGCATTGGTATTTGTTAACAATAATTATTATTTCATCCTACCAACAAAT
GTGCTCCACTGAGGAGACAACAACGAATACCTTTGAAGTTACACGAGGCT
TCGAAGACAGTTTTAAATTCTTAGAAAAGCGAGGGCTTGATTGCGAGACG
TTGAAAACAGAGGATGATGGTACGAAAAGTTGTTTGTGTATAGGTATGGA
TGACAAGAAAACCATGATTTTCGAAAGAAGTAGGACGAAAACAAAGGCAA
AGTGTGAAATGAGCCGCGAAATCATGGATAACTTCAAACACGAAGAAATG
TTTGGGGGAGGTGGACTAGAGCCATTCGAGTTCAGTATTGAGATGAACAA
AGAGATTGGTTTGATGAGATGGAATGAAAATGAAGGGTGGATTGGTACAT
ACGCCTTATACATCGCGGGTGGAGATCGACCTGTGACAGAAAGAGAATGT
AAAGATCCAAAGATTGAAAGTGTAAGTTGTAATAATTTGAAATGGGCGTC
CTGCGACAAAGTAGTAGCTTCAGATTTCACGATCACAGAGAAAAAGACTG
GATCCAACCAAGCTCATTTCGAATTCCAGGTCATTTCACttcaaatgaaa
atcaaaagcaAATATCAAGGACGTTTGGTAGCCCTCCAAATGTTATGTGG
GATTGAAAAGGCTTTCATGATCTTCAAGTTTCAAGGAAGGCGGGATTACC
CAATTCCAGATTCACCTGTAGTCATTTCAACAACCGCAACACCAATAACA
GATAATTCAACAACTCAGCCGCAACCTCCACCCAAAACAACAATACAAGC
CTCTGAAACGACAACCATGAGTTCTGCAATAACAACAACTTCAGGAAGTG
GTAATGGAGACAATAATACAGCGAGTTTTCCATCAAACACGGTGTTAAAG
GTAACTCGTGGGTTACTAGACAAATGGAGCTGTCGCGCAGACGAGGAATG
TGTTTGTAATGCACCCTTGACAACTTACATGATCAACGAAAATGGCACGC
GTGGCTGCTACGGATCGGTGGAAACAATTGAACGAAATTTCAAAGGGCAT
GACATTTTCTTATTGGATAATCAAGTCGTATTTTATGTATCCTGGAAAGA
TGACGATAAATGGCGTAatccaaaatcacaaaagatATTTGACATTGATG
GCAATGTAGTAACTTCGAATACATGTGACTTGAACAGTTTCTTTTCTACC
GAAGTTTACAATCATGACCGTTGGCAAACTTGGAGTAATGATTATTTCAA
ACTTGATCCGACAGAGAATTCTTCCGATGGAGGAACCACCATAGGGATTG
ATaaAGATTACAACGAGAACTTTGGCGATCTGCAAGGTCACTTGATCAGA
TTTGGCTTTAAGTGCAACAACAAAGAAGTTGCTTATttgtttcaaaagtt
tcaagGAGAAAGAGAGTATTTACCAGGCAAAGATTTAGCTGAGCCATCCA
CCGAGCCTTTACTGACAGGTAGCGAATTAACATTGGTCATTGGCTGCACT
TTGGGAGGCGTTGGTTTCATTGGAATCATTGTCACTCTTTATATTCTCTT
AAGAAAAAGGAGGAGAGATGGAAATGAAGAGTTAAAAAATGATCCAAAGT
TCAATCAAGAGGATGACAAAATCGTGATGAGCAAAGCTGACATCATGGAG
CTGGCAGAGCAAATCCtacaaaagcgagaaaagacCGACTTCCAAGGGTC
TCCTCGCTACGTTCCTACACATCTTCCGGATCTACCTGATCCACGCCCCC
AGGTGGGTCCCTTGTCTctaaattacagaccagaagcAGAGGATCAGAGC
AACGGACTGTATCAAGAAATACCATACGAAGGGTTGTATTTGAAGCCTCT
GGCTGACGAAAGTTATCTTGATTTAACGACTATACACAAATCAGAGTACT
CGCCAAGTATGAGAAGCAATAAAAGCGAATATGAAATAgaagatgaaatt
gaaaatcaaattaatagAAACGACGACCTTGACGCTGTCGATAAAAGACG
GAATATTttaaatgagtcaccgcgtacTGAAAGTATAGACAGCAACGTTA
GTGCTTATGAGCTTGAAGATAAATACTCGCCACAAAACAAAACTGAcaca
aaaaacgataaaaacaaCCTTGGTAAAAGACAGGGTACTTTAGAATTGCC
ACCGCAGTATACACCTGGGTTAAGGAGAAGTAGCAGTTTCTATGAGTTAG
AAGACGTTTACGCTTCGAAAAGTAAAAACGATGTCGGAATCGAATCAAAC
AAACAGCAAAGTATCGATGATATCGATAAAAAGGATATAGGTTCTGATGT
TAAAATACAAATTGAAAATACCGAACTTGTTACACCCAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001710XLOC_001710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003081-exon-sc0000025-1491911889:143611..144031TCONS_00003081-exon-sc0000025-1491911889:143611..144031Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:143611..144031TCONS_00003081-exon-sc0000025-1510915933:143611..144031Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:143611..144031TCONS_00003081-exon-sc0000025-1575043694:143611..144031Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:144390..144570TCONS_00003081-exon-sc0000025-1491911889:144390..144570Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:144390..144570TCONS_00003081-exon-sc0000025-1510915933:144390..144570Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:144390..144570TCONS_00003081-exon-sc0000025-1575043694:144390..144570Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:144799..144901TCONS_00003081-exon-sc0000025-1491911889:144799..144901Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:144799..144901TCONS_00003081-exon-sc0000025-1510915933:144799..144901Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:144799..144901TCONS_00003081-exon-sc0000025-1575043694:144799..144901Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:145781..145898TCONS_00003081-exon-sc0000025-1491911889:145781..145898Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:145781..145898TCONS_00003081-exon-sc0000025-1510915933:145781..145898Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:145781..145898TCONS_00003081-exon-sc0000025-1575043694:145781..145898Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:146696..146889TCONS_00003081-exon-sc0000025-1491911889:146696..146889Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:146696..146889TCONS_00003081-exon-sc0000025-1510915933:146696..146889Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:146696..146889TCONS_00003081-exon-sc0000025-1575043694:146696..146889Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:147983..148136TCONS_00003081-exon-sc0000025-1491911889:147983..148136Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:147983..148136TCONS_00003081-exon-sc0000025-1510915933:147983..148136Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:147983..148136TCONS_00003081-exon-sc0000025-1575043694:147983..148136Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:148380..148636TCONS_00003081-exon-sc0000025-1491911889:148380..148636Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:148380..148636TCONS_00003081-exon-sc0000025-1510915933:148380..148636Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:148380..148636TCONS_00003081-exon-sc0000025-1575043694:148380..148636Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:149167..149281TCONS_00003081-exon-sc0000025-1491911889:149167..149281Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:149167..149281TCONS_00003081-exon-sc0000025-1510915933:149167..149281Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:149167..149281TCONS_00003081-exon-sc0000025-1575043694:149167..149281Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:149677..149714TCONS_00003081-exon-sc0000025-1491911889:149677..149714Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:149677..149714TCONS_00003081-exon-sc0000025-1510915933:149677..149714Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:149677..149714TCONS_00003081-exon-sc0000025-1575043694:149677..149714Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:150275..150378TCONS_00003081-exon-sc0000025-1491911889:150275..150378Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:150275..150378TCONS_00003081-exon-sc0000025-1510915933:150275..150378Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:150275..150378TCONS_00003081-exon-sc0000025-1575043694:150275..150378Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:150772..150811TCONS_00003081-exon-sc0000025-1491911889:150772..150811Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:150772..150811TCONS_00003081-exon-sc0000025-1510915933:150772..150811Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:150772..150811TCONS_00003081-exon-sc0000025-1575043694:150772..150811Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:151179..151200TCONS_00003081-exon-sc0000025-1491911889:151179..151200Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:151179..151200TCONS_00003081-exon-sc0000025-1510915933:151179..151200Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:151179..151200TCONS_00003081-exon-sc0000025-1575043694:151179..151200Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1491911889:151930..153015TCONS_00003081-exon-sc0000025-1491911889:151930..153015Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1510915933:151930..153015TCONS_00003081-exon-sc0000025-1510915933:151930..153015Clytia hemisphaericaexon
TCONS_00003081-exon-sc0000025-1575043694:151930..153015TCONS_00003081-exon-sc0000025-1575043694:151930..153015Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003081-proteinTCONS_00003081-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:143611..153015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00676024	0.0329615	0.00933745	0.0182705	0.182331	0.28005	0.000396806	0	1.13934	1.90675	2.21521	0.900457	1.68061	2.73613	1.61946	1.84671	0.0495267	1.02796	1.61269	2.20165	0.0115495	0.0128176	0	0	0	0	0	0	0.00750334	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top