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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003203 ID=TCONS_00003203|Name=TCONS_00003203|organism=Clytia hemisphaerica|type=transcript|length=6058bpRun BLAST on NCBI protein sequence of TCONS_00003203-protein >TCONS_00003203-protein ID=TCONS_00003203-protein|Name=TCONS_00003203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1673bp FCRLCVGVLKQSGIIFKIPTIHSMLRKKMADKKDERMRDKSKVHSGRSGKRun BLAST on NCBI transcript from alignment at sc0000025:803483..832314- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003203 ID=TCONS_00003203|Name=TCONS_00003203|organism=Clytia hemisphaerica|type=transcript|length=28832bp|location=Sequence derived from alignment at sc0000025:803483..832314- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000025:803483..832314- >TCONS_00003203 ID=TCONS_00003203|Name=TCONS_00003203|organism=Clytia hemisphaerica|type=CDS|length=5022bp|location=Sequence derived from alignment at sc0000025:803483..832314- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003203 vs. Swiss-Prot (Human)
Match: YTDC2 (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2) HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0 Identity = 327/727 (44.98%), Postives = 467/727 (64.24%), Query Frame = 3
Query: 1728 KEMDTALAQAWLNGDDEAFDQIIHLIMNENVNIDYQHSDTKMTSLIVAAARGNQTLTEQLIELGAKLDIRDPNNNRDALEWANHFSQNHVVEYLKGVSQSVSNXXXXXXXXXXXXXXXXXXXKRRL-ELYHKSFDDQRVDISLILCLLGQICQKQQLKGSILIFLPGYDEIVSLRDK-LKQDKEFSKRS-KYQVLMLHSMLPPGNQRKVFGRPPSGVQKIILSTNIAETGITIDDVVCVIDSGKVKEKSHDAISCVSTLRTVWISKASAIQRRGRAGRCLPGICYHLFSQDRFHHFQTYQDAEMLRVPIHALCLQTKMLAPVNVSITDYLGKAPEPPSNLITRSSIKMLKAISALDENEEMTDLGKLLIELPIDPQFGKMILIGMSLKCLEPSIIIACCSSYKEPFLLPNVXXXXXXXXXXXXXXXXXXYSDQIAMLRAFQGWQRAKREGKEKVYCARNFISLGTMEMVSGMRRQIIGLLRSLGLVRMKGPGNMRDLNTNSRNWSIIKAVVGSGLYPNFIKVDKENKVLVSEKEKKVTIHNSSVLVARSEDKVQSTVSRANKLNSTISSLPLNWLVYEELSRLYYSVQIRXXXXXXXXXXXXIGGPCLSYDXXXXXXXXXXXXXXXXXXXXXXXXXXXNFFXXXXXXXXXXXXXNTASFKIDDWMSFTGDDSTLYALAMLRIKFLALFSKHIQIPSKPWTQADSDIVQAIADVLIKEEQVVGLVNPA 3899
KEMD L+ WL+ D +AF Q+ HLI+ ENV++DY+HS+T T+L+VAA RG + EQLI +GA + + +N AL+WA HF Q +V+ L+ S ++ + T + R L + YH SFDD++VD+ LI+ LL IC G++LIFLPGYDEIV LRD+ L DK F+ + +YQV MLHS + +Q+KV PP+GV+KIILSTNIAET IT++DVV VIDSGKVKEKS DA++ V+ L+ VWISKASAIQR+GRAGRC PGIC+ LFS+ RF + +Q E+LR+P+ LCL TK+LAPVN I D+L KAPEPP LI R++++MLK I A+D E++T+LG L +LP++P GKM+L + LKCL+P + IAC +Y++PF+LP ASQK +A + + ++ ++SD +A+LRAFQ WQ+A+ +G E+ +C +NF+S TME++ GMR Q++G LR+ G VR +G G++RD+NTNS NW+++KA + +G+YPN + VD+EN VL KEKKV H +SVL K+ AN + I +LP +WL+Y+E++R + IR S ++ V + + GP ++ S R + K +N A+ K+D+W+ FT + L LR K+ +LF + ++ PSKPW+Q D ++AI VL EEQ GL P+
Sbjct: 467 KEMDACLSDIWLHKDIDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVHSK-ASNGWMALDWAKHFGQTEIVDLLESYSATLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYNICHSCD-AGAVLIFLPGYDEIVGLRDRILFDDKRFADSTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPASVLSQPQYKKIPP----ANGQAAAIKALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCGPARLASNALQEPSSFRVDGIPNDSSDSEMEDKTT--------------ANLAALKLDEWLHFTLEPEAASLLLQLRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPS 1173 HSP 2 Score: 359.377 bits (921), Expect = 4.207e-101 Identity = 179/362 (49.45%), Postives = 257/362 (70.99%), Query Frame = 3
Query: 165 QEICVGEELKIAVSVAVDRFINDEAQTELEFPSSLTANERAYVHRYCKDLGLITKSRGKGNKRYLTIYKVAEKSVTVNGRLT--LSRSSSGIINSLLQDLPVTSRDKHELSGQKLHKGI--VNEQNKILARENRLVLGNAPHIPPDAKETDLKKKAKDLPIYQFKDAIVDAVAKNQVVMIAGDTGSGKTTQVAQFLLEKHHKSRVPCRIICTQPRRLSAISIAERVSAERGERVGQTVGYQIRLESKLSSKTLLHFCTTGVLLRLLMVGHKCLSNLTHIIVDEIHERDCLSDYLLISLRDILKSYKKLKVILMSAALNVDLFTSYFGKCPFIHVNGSTHDVKTFFLEDILKQTGYLNKGMRK 1238
++I + EE+KIAV++A++RF + Q E+EFPSSLT+ ERA++HR + LGL++KS+GKG RYLT+ K + S T + +T L+ ++ + SL+Q PVT++++ EL + + V +N+ +++ + + P IP E++ + LP+++ ++ IV + +N+VV+I G+TGSGKTTQ+ QFLL+ K+ +PCRI CTQPRRL+AI++AERV+AER ER+GQT+GYQIRLES++S KTLL FCT GVLLR LM G LS +TH+IVDE+HERD SD+LL LRD+L+ + LK+IL SAAL+V+LF YFG CP I++ G +VK FLEDIL+ TGY NK M K
Sbjct: 37 KDIRIDEEVKIAVNIALERFRYGD-QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKK-KDGSETAHAMMTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLK 396 HSP 3 Score: 176.407 bits (446), Expect = 5.186e-44 Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 3
Query: 4143 YFILKCNNEKNMGISFDRSIWATTKSNEKRLHRAFKDSEEVYLVFSVQGSGRFQGVAKMISGISDKQCEDFGSANLGGVFDIEWIHQEELPFQATQHLANPWNDNKKVQISRDAQELEPSVGKALVNLW 4529
YFI+K +N +N+ IS + IW+TT SNE++L+RAF +S VYLVFSVQGSG FQG ++M S I ++ +D+GSA LGGVF +EWI +E LPFQ HL NPWNDNKKVQISRD QELEP VG+ L+ LW
Sbjct: 1290 YFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQLLQLW 1418 The following BLAST results are available for this feature:
BLAST of TCONS_00003203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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