TCONS_00003210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003210
Unique NameTCONS_00003210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003210 ID=TCONS_00003210|Name=TCONS_00003210|organism=Clytia hemisphaerica|type=transcript|length=1297bp
TACGGAATTCTTTATTATGAATTAAGCAATATCGAAATCTCGTTAAACGG
TTAGGTTCTAAGAAATTTTACCAGgagaaaaacattagaaaacaaaatgg
cgaatACGACAGACACAGAACCTTTACTGATAGACACAGATGACAACGAT
TCACTACCTTCAGCTCCAAACTTAGGCACAAATGAAAATGatGGCAGCAT
TGACGTCACCAACTCCTCAATAAATCAAAACAGAACAAGTGGAGATGGTG
CACCTCCACCTTATACAGACTCTCCTCCCCCATATGAGGGGGTACCTGGG
GTGCCTGCAATTGCTGCAGCTCCCGCACCACCTGGTGTTATGGGAGAACC
AACAGTTGTTTGCAGAGTTTGTCAGCAGTTGATTTTCATACGGGGACGTG
AAGGACAAAGAGTTGTAAAATGTTCAAACTGTCACGAAGCAACTCCAATC
AAAGCACCACCTGCTGCTAAAAAATACATCAGATGTCCTTGTAATGCATT
GCTAACATGTCGTGCTACATCTACCAGAATTTCATGCCCAAGACCTAATT
GTAAACGGGTGATAAACGTTGGTGGTACACCACCGGCTGCAACTGGCCCC
ATGGTGCCAAATGTACAAGCTGGCAATAATTCGAGAATAAGAGTTACTTG
TGGGCACTGTAATGAAACTTTTGTGTTCCGCACAACTGCTCATTTGGCAA
GATGTCCATACTGCCGACGAGTATCTTCAGTGGGACCAAAATTTGCCAAG
AACAGGGCCATTATTTTTGCTGCCATTGGTGTTCTTTTCTTGACTGCTGG
TGTTGGAGTTACTgTTGCCACTTTGGAAATTGCTCAAAAGAATGGAGggg
TTTATGTTGTTTGGATTGGTGCATTTATTGTTGGATTATTAAACTTGATT
CGAAGCTGTTATTATTGCCAAATGACCGTCAGTCAAATCGAAGGTCAATC
TTAATGAAGAACATTATGCAAATTGAAAGCAAGACCTACAAAGATCAATG
AATGAAGAAAGTAATATGGTAAACAGTGCATTGTTtcagaagaagaagat
gaagatgaagataaTGATATGGAAGATTTTCACACAGTGGtgcattttta
agaaaaatcaaaataagtgAATATTTTTTGCCTAAGCAAGTAAAGGATTC
TAATGGCATGAGTATCATACAGCAATTTGAGCAATGGGTTGAATTATTTT
ATGTCTTGTTTACGGTTCTGTTTCAAATACCCCTTAAAAAACCTTTGTCA
TTGGTGGGGAATTTTAGCTCTATGATTATGTAGCAACTTTTCCCCAA
Run BLAST on NCBI

protein sequence of TCONS_00003210-protein

>TCONS_00003210-protein ID=TCONS_00003210-protein|Name=TCONS_00003210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MANTTDTEPLLIDTDDNDSLPSAPNLGTNENDGSIDVTNSSINQNRTSGD
GAPPPYTDSPPPYEGVPGVPAIAAAPAPPGVMGEPTVVCRVCQQLIFIRG
REGQRVVKCSNCHEATPIKAPPAAKKYIRCPCNALLTCRATSTRISCPRP
NCKRVINVGGTPPAATGPMVPNVQAGNNSRIRVTCGHCNETFVFRTTAHL
ARCPYCRRVSSVGPKFAKNRAIIFAAIGVLFLTAGVGVTVATLEIAQKNG
GVYVVWIGAFIVGLLNLIRSCYYCQMTVSQIEGQS
Run BLAST on NCBI

transcript from alignment at sc0000025:887549..895700-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003210 ID=TCONS_00003210|Name=TCONS_00003210|organism=Clytia hemisphaerica|type=transcript|length=8152bp|location=Sequence derived from alignment at sc0000025:887549..895700- (Clytia hemisphaerica)
TACGGAATTCTTTATTATGAATTAAGCAATATCGAAATCTCGTTAAACGG
TTAGGTTCTAAGAAATTTTACCAGGAGAAAAACATTAGAAAACAAAATGG
CGAATACGACAGACACAGAACCTTTACTGATAGACACAGATGACAACGAT
TCACTACCTTCAGCTCCAAACTTAGGCACAAATGAAAATGGTAAGATACT
TTGAAATTTCTTTGACCTTCTAAACCGTNAACTTAGGCACAAATGAAAAT
GGTAAGATACTTTGAACTTTCTTTGACCTTCTAAACTGTGTTTTAGCATT
TTTGTAAAGGCTAAATTCATTGATGGAAAACAAAAGTAAAAAGTATTGTT
ATTTTTTCATGAGAACGTAGGTGTCATTCTAACAAATCAAGAGTCCCGCG
TCCTGTAGAATAGGAATGTACACATATCGGTAAATTTATCCTGCTGTACA
TCTGCATATAAACTATATAAATATAAACCCAGACGATCTCAATCGAACGG
AACCGACAATCGAACCAGTCGAACCACCAAATTCCCATTATTTTGCTTCA
CTAACATTGAAGCGCTTCTTTTTTTTGCACGGGAAACATGTGGTTTTGAA
CCGTGACCTAAGGATTCGGCCCAAAGCGAGTAACGACGAACCAGTGACGA
ATCATATCCTTTCCATACTGTTGAGAAAGTATGACGAAAGTGGTGGATTG
TATGTTTTTGGGACATCAGACACGTGCGTTTGGTTTGGGAACGCGAAACA
CGAACGCGAACTACCCATGTCTAAACTTTTCAATATATCTCCAAAACTAA
CAGACTTTTTGAAATTCTGTAAAAAGGTCTAAGCTCCTGAATAGTTTTAC
TATGTTCTGTGAAAAGATCATAACCATCAGTGAAATACTCGTTCATCTAT
TTAAGATTGAAGACAAAAATTTGCGAAGAAAAATAAACCTTGAGCACAAA
AAATGCTTTTTTAAACACTCTACTAATTAAAGTACCGTGAGAGGTCCTAA
AGCCGACAGCCCAGCCTAAATCCGATGGGGTCTTTCAAAGATACAAACTA
AAATAAAAACAAGCCTTTAACACTGTGACGCAACGAAGATACCAAAGTGT
CAACTAAACTGAGAGATTTGATACATTGAACCAATTGAACCAAATAGAAA
TAACAATAATTGCTTCTTATACAAAACATAATTTTTTATTGCAATATGTA
CAACAGCAGTAACACTCATCATAAAAAGTAATTACTTTTATAACAATTCA
CACTTTTTAAATTACATTAATTGGCATCTTGACATTATAGCCATCTTGTT
AGATGTTTTGTTTCGAGAGCTCTTGCAATAGTTTATCGTTCAACTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATGAGATAAGATAAGATAAAACCTTAAAATCA
ACCAGAATTTACAACCTTTCGTCCAAAGCAAAAGACGTGCTTTTCTCGCC
GCCATCTTGTTTTAGAATGAGAATTCTAGAGAATTCCATTCGGTTCCAAC
TCCTGCGGCCTTTTTTTCATCCAATCAGATCGCGCGATTTCACTTTCGCT
TTCTCTAGTCCAATAAGACTGCGCGGGATTTGAGTCATGTGACATCTCTA
TTAAAAAACCCGCGCGAATTGAAATAGAAATACAGGTGGTCACACTACTG
GCTACAGAAACTAAAAGCAAGCAATTTAGGCCAATATTTTTGGTTTTTCT
GAAGGACAAAAGGTATAGGAAGCTTTACTGAAAGAGGGATAAGGCTGGGA
CAATCTATTTAAAAGATATGGACAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCGTCTCGCCCCCCCCCTGATATGAGCAAGGGAACCAT
GTTGGCCACCCCTACTGAAGATTTCAGATCAAAATAAGCAAGGAATTAAT
TCCTGTAACTTGAAGAAAATTGGAAAAAGCTGGTTTTTGACTGATCCTAA
AGTGCTATTTTTTGGTAAAAGCTATGCAATTTATGTTTAGATTTCTAGAA
AGCTTACCCATTCATTGTCAATACATTTTTTATTTGAAAGTAATCTCTTC
CATGGAATAAAAAGATATAGTCAAATCTTGTAGGGTCATTTTTAAAAAAA
ATTTTGCCAAATTCGATTTTCGCATTTCGCCATTTTACCCTACGCAAACG
CACGTGTAGAGGGCGTCAAACACTCTTCTTTGATTTACGATAGAAAATTG
GCTTTCTTTAGAGTATAGAGCAATCATACGCAGTCTAAAAGCGATTAAAC
AGCAATCGAATACAGTCTAACGACAATCAAATGCAGTCGAACAACAATCG
AACCAATCGAATGCAGTCGAACACAGACAGTGAAGTCAAGTTTGAAGATA
TTCTTTATTAGAAAAATGGCTAAAAGCAGTCAAAACGCAATTTACTTACC
TCCTGAGTTTGTCTTTGCTATGCTAAAATATAACAAACCTTTGTCATGCT
GTCTAATTACAAAAACTTCCAATCACTACTTCTCTGCCATCTTGTTTCAC
TTTAAATGCTGTGTTTTAAAATTCCTTAGTTACATTATATGTACGGAAAA
GGTTTTCTCCAAGTTTTTTCAATCCCGGGATTAAACTACGAGGGCGGTTT
CGCCCGCTTATTTTTCTTTCGGCGTTGAGCCCTGGGGATACTTAACAATA
AAAGAGATTCTAAGATTAATGTTGAAATGCGTATTTTTTCTATGAATTTA
GGCGATACTCAACAAAAAATAAGGTGGTTTTAAACAAATCTTTGACAAAT
TGGTGTTTCTTTCTTTTCTAATAGATGCAAATCACGTTGAAAAAAGAATA
TATTTCTGCCTTTACTTTCACTTTCGCTTTCGTGTTACGCGATTTTGATT
GGATGAATACCCCTCGCTAACAAATTCTGATTGGCAGTAAGTCTTTAGCT
TCGGGATTCTGATTGGATCATTTCCCGCGCCATGGTTGAATTTTGATTGG
TTGAAAGTTTCTGAGCGTGAATTCTGATTGGATGAATACCTGAAAAGTAA
ACAATAGTATGTAAGTATTTTGCCTATCAAAACCTAAAGATTTCTAGGGG
GTTTTATTTACTTTGCATGACGGTAATTAAGCCTACAAAACACCAAGAAA
AAAACCCAACATAGAACAGGTGTATTTTGTAATGCAGAATATGATAGTGT
GAATCTTTTTGAAATTCAATGTTAGGATTTTTTCTCAATGCCCCGTAACT
ATGCCCGGGGTACCCGTTGCTAAGATTTTATGTTAAAAACGAAAGCTATT
ACGGCAAAAATTAATCAAAAATAGCAATTTTCATAATACCTCAAATATTG
ATACTTGACTGTACTGACAATCAAACCAATCAAATATTAATATTACCCAG
AATTTTGATGTTCAATTGCATTCGATTTAGTTCGACTGGTTCGATCGTCG
ATTCAGTTGACGATATATCAGGATTAGAAACCAGGCTAGTCTTACCCCTT
TTTTTATCTTTCCCTTAACAACAATACAATGCTGACACATTGACACAACA
CATTGACAAGTAATCCTAGCCTGAATATCCATGCTCAAAATTTTAGAAAA
AACAAAATTTACTTCAACATATACGAAGTTCTAAACTTATAGAGCTTGGT
CTCCCTAGAATGAAAGTGCAAACCCATGTTTCCAAAACTTTCCTGGTCAA
CCCAGGGCAGGCCAAACAAAAGGTAATAAAAAGGAGTCTTATAAGATCGA
AAACACTTTTACTTTCAGACGATACAAGAACACAATCGAACATTAAAACA
CTCGAACACAATTTTTATCAATCAAATCTGAAAATTGCCGTAATATTCGA
TTGAAATTTGATCACGTTTGATGATCGAATTTCAATCAGCTGTTTGCATT
CGTTTGCATTGGGTTTTCATTTTCGATTAAGCTAATCTTGGGCCTGAATG
TCGACGCAACCAACTTCAGATTAAATTCCTCCACTAGAATTTCCTCAAAT
CAATGAAATGAGCTTCAACGTAATTATGATGACCTAAAACTCTCTGATCA
AGAAATTAAGGAACTAAAATCTATACCCAAAATCTTCTACATGAGCAAAT
ACACAAACCCATGCCATAGCAAAGAGATTTTGGTCAAATTTGACAAAATT
GTTATTTTATAAGATATTTTACGCTACTATCATTGTCAGAATATATTGGC
ATAGGTATTTTAGCATTTTGCAGAGTTTGGGCGAGAGTAACATGTTCAGG
CTTGCTTTTTTATCTAATAAAATATTTCGATTTGGGAGGGTTATACTGGC
TTTTGGGCTTTATTTTCAGCCTAGTGGGTCCTCAGATCCTAAGTTCTTCA
ATCTTTAAGTCTCATGTTAAAACTCAACCCCTACTTGCAGTTTTTAAAAT
CTTGAAGTAAATTTTTTTGTCACGCAGATGATTGTAGGACAACCCTGTAT
TATTAGAATTTTGATTTTATTAGGGCATTCTACTCAAACATAATTCTATT
TGAATTGAGACATTCCTATATCATTTCAGGCGTGCAACAACATGCACACC
CCTCCACACACACCTAAAATCTCAGAGGAGTGCAATCAAGCACACACCAT
AAATTTAGACTTTACTATTAAAAGTGGTAGATAGCACGCCTTATTACATA
TCTAAATTAGCAAAACTCAGATTTTAGGAGTGTGATTGATCACACGTCTG
GCTTTTTTAAATGGCAAAGCCTGCTATATAGATCGACACAAAAAAGATGA
TATACTATAAAAGATGTCAACTTGAAAAGGTGTCATTCACAATTACCATA
GCAACAAAAAAAATCCAAAATAGAAATATTTCTTTTGCTGCTGGAGCATG
GAATTGTTCTCACGCCTGATTGGCCAAAATGCTCTCTGATGCAGCCATTT
TTATAATTTTTTGTGCTCTGCTACCAAAAAAGTATAGTTCAATAATATGG
TGAAACCCAGCTACAGTTGCAGTCTGTTAATGTTACTTTTATCTAATTGC
ATAAATAATTCAATAACTATATCTATAAAATGAAACTTTTTTAAAACACA
TTGCTTGTTCATATAAAGGGGATGATTTCTTTTATGTTTTAATTTTAGAT
GGCAGCATTGACGTCACCAACTCCTCAATAAATCAAAACAGAACAAGTGG
AGATGGTGCACCTCCACCTTATACAGACTCTCCTCCCCCATATGAGGGGG
TACCTGGGGTGCCTGCAATTGCTGCAGCTCCCGCACCACCTGGTGTTATG
GGAGAACCAACAGTTGTTTGCAGAGTTTGTCAGCAGTTGATTTTCATACG
GGGACGTGAAGGACAAAGAGTTGTAAAATGTTCAAACTGTCACGAAGCAA
CTGTAAGTTTGTTAAGTATTGTATTGACTTAAGTGTTTTGATATTTAGAG
GGTTCTCATGAAATGATATAATAGTTCTTTATACATGAAATGAATTTTAT
CTTCGTTTAGCCAATCAAAGCACCACCTGCTGCTAAAAAATACATCAGAT
GTCCTTGTAATGCATTGCTAACATGTCGTGCTACATCTACCAGAATTTCA
TGCCCAAGACCTAATTGGTTTGTATTTAACATATATTGTCTTCTATCATT
CTAATGCTCAGTCGGATATTTGCAAATTTCTCGAAATAAATTAGATCTTA
TATTAGGGATAGAATTGACGTTATAAGCTCTAGGTCCATTATTTCAAAAA
ATTTCATTCCAACAAGGGAAATCTATTGGTGCATTGTAATTGGTGCATTG
TAGGCCTAAACTGGGTTATATTTTTATTCAAAACATTGGCTCCTTTTTTT
TAAGATATGTTTTAAACTGATTGCCAATAATTGTTTTGTTACTTTTAGTA
AACGGGTGATAAACGTTGGTGGTACACCACCGGCTGCAACTGGCCCCATG
GTGCCAAATGTACAAGCTGGCAATAATTCGAGAATAAGAGTTACTTGTGG
GCACTGTAATGAAACTTTTGTGGTAAGCTGTGATGGTTTAGTTTTCTTCA
TATCATGAGAGAGGTGTCTTTCAAGATAAAGCATAATTCCTAAACTTCTT
ATATTTAGTGGTGTTAGAAGACTAGCAAAGTGATCTAACTTTTTTACCTA
CGCACATTCGACCCAGTTCTAGTATCTATCAGATTTAGAAAAAAAGCATT
CTATTTTTGTTTGTAAGTGTTTGCTCCCATAGATTCTATAGACGCAACAC
AATCTTAACTTTTGGGTTTGTTTTTTTCTATAGTTCCGCACAACTGCTCA
TTTGGCAAGATGTCCATACTGCCGACGAGTGTAAGTCCGGTCATTATATT
TTGATATGAATTTTAGAATTACTAATAAAAAATTATATGTATTGTTTGTC
CGATTGGTTCAATCAGTGTTTTAATCTCATATAATAAGTTATGTCAATTT
TTTTAGCAAAATGGATTTTAACTTCCTATTACTTCTTTTTTGTATAGATC
TTCAGTGGGACCAAAATTTGCCAAGAACAGGGCCATTATTTTTGCTGCCA
TTGGTGTTCTTTTCTTGACTGCTGGTGTTGGAGTTACTGTAAGAATTGTA
CCTTTATTGATCTTCTTTGAGAGATTATTCTCTACTGACAGCTATATCTA
AAGTTGTGAAGATTTGGATTTAAAGTTTTGCTATTTGTCAATTTTTCCTA
ATATTTTTCTTTATATTCTCTTATTTGAGAGATTATTCTCTACTGGCGGT
TTTACTAAAGTTGTGAAGATTTGGGTTTATTTAGTTTTGCAATTTGTCAA
TTTTTCCTAATATTTTTCTTTATGTTCTCATTATCTGAAACTTTATCAAT
AACCTTTTATTATTTAAATTTTTCAGGTTGCCACTTTGGAAATTGCTCAA
AAGAATGGAGGTAATTTGCTGATATTTTCTTTGTTGTTCTTTGACTTAAA
GTTTTCTTCAAAAACAACGTTCCAAAGTTCTACCTGTTTCTGACATTTTA
CCTGTCAGAACGTTGGAATACAACCATTCTATTTTCATTTTGTTTTTCTT
TTTAGGGGTTTATGTTGTTTGGATTGGTAAGCTTTTACATTATTCTGCTG
ATATCTTTGATTATAATAATAGTTAGGCCTTGTTGTTGTTTCTGGCCTAA
GCTTTACCCAAAAATTTATCGTATTTGTAAAAAGTGCTATCCTAATGGTA
GCACTATTCGATATGGGTCAATTTATGATTCAATGAATTTCTCTGTATAT
CGTTATTACCATAATTTGAGTTGTCATCACATCGAGAGAAGTGATACCAT
TGGAGTTGTAATGCTTATTTTACTTCTNTGAGTTGTCATCACATCGAGAA
AAGTGATACCATTGGAGTTGTAATGCTTATTTTACTTCTGTGACTGTTTG
TTATAAATGAAGAACAAGGTTGTGTTGTTTTTAGCTCAACATTTTCTACA
TCATTTTCTTCTTAATTTTCAAGGTGCATTTATTGTTGGATTATTAAACT
TGATTCGAAGCTGTTATTATTGCCAAATGACCGTCAGTCAAATCGAAGGT
CAATCTTAATGAAGAACATTATGCAAATTGAAAGCAAGACCTACAAAGAT
CAATGAATGAAGAAAGTAATATGGTAAACAGTGCATTGTTTCAGAAGAAG
AAGATGAAGATGAAGATAATGATATGGAAGATTTTCACACAGTGGTGCAT
TTTTAAGAAAAATCAAAATAAGTGAATATTTTTTGCCTAAGCAAGTAAAG
GATTCTAATGGCATGAGTATCATACAGCAATTTGAGCAATGGGTTGAATT
ATTTTATGTCTTGTTTACGGTTCTGTTTCAAATACCCCTTAAAAAACCTT
TGTCATTGGTGGGGAATTTTAGCTCTATGATTATGTAGCAACTTTTCCCC
AA

Coding sequence (CDS) from alignment at sc0000025:887549..895700-

>TCONS_00003210 ID=TCONS_00003210|Name=TCONS_00003210|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000025:887549..895700- (Clytia hemisphaerica)
ATGGCGAATACGACAGACACAGAACCTTTACTGATAGACACAGATGACAA
CGATTCACTACCTTCAGCTCCAAACTTAGGCACAAATGAAAATGATGGCA
GCATTGACGTCACCAACTCCTCAATAAATCAAAACAGAACAAGTGGAGAT
GGTGCACCTCCACCTTATACAGACTCTCCTCCCCCATATGAGGGGGTACC
TGGGGTGCCTGCAATTGCTGCAGCTCCCGCACCACCTGGTGTTATGGGAG
AACCAACAGTTGTTTGCAGAGTTTGTCAGCAGTTGATTTTCATACGGGGA
CGTGAAGGACAAAGAGTTGTAAAATGTTCAAACTGTCACGAAGCAACTCC
AATCAAAGCACCACCTGCTGCTAAAAAATACATCAGATGTCCTTGTAATG
CATTGCTAACATGTCGTGCTACATCTACCAGAATTTCATGCCCAAGACCT
AATTGTAAACGGGTGATAAACGTTGGTGGTACACCACCGGCTGCAACTGG
CCCCATGGTGCCAAATGTACAAGCTGGCAATAATTCGAGAATAAGAGTTA
CTTGTGGGCACTGTAATGAAACTTTTGTGTTCCGCACAACTGCTCATTTG
GCAAGATGTCCATACTGCCGACGAGTATCTTCAGTGGGACCAAAATTTGC
CAAGAACAGGGCCATTATTTTTGCTGCCATTGGTGTTCTTTTCTTGACTG
CTGGTGTTGGAGTTACTGTTGCCACTTTGGAAATTGCTCAAAAGAATGGA
GGGGTTTATGTTGTTTGGATTGGTGCATTTATTGTTGGATTATTAAACTT
GATTCGAAGCTGTTATTATTGCCAAATGACCGTCAGTCAAATCGAAGGTC
AATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001772XLOC_001772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003210-proteinTCONS_00003210-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003210-exon-sc0000025-1575043694:895526..895700TCONS_00003210-exon-sc0000025-1575043694:895526..895700Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:895450..895464TCONS_00003210-exon-sc0000025-1575043694:895450..895464Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:890049..890302TCONS_00003210-exon-sc0000025-1575043694:890049..890302Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:889834..889940TCONS_00003210-exon-sc0000025-1575043694:889834..889940Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:889429..889552TCONS_00003210-exon-sc0000025-1575043694:889429..889552Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:889121..889167TCONS_00003210-exon-sc0000025-1575043694:889121..889167Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:888863..888953TCONS_00003210-exon-sc0000025-1575043694:888863..888953Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:888541..888574TCONS_00003210-exon-sc0000025-1575043694:888541..888574Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:888375..888395TCONS_00003210-exon-sc0000025-1575043694:888375..888395Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1575043694:887549..887977TCONS_00003210-exon-sc0000025-1575043694:887549..887977Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:895526..895700TCONS_00003210-exon-sc0000025-1510915933:895526..895700Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:895450..895464TCONS_00003210-exon-sc0000025-1510915933:895450..895464Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:890049..890302TCONS_00003210-exon-sc0000025-1510915933:890049..890302Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:889834..889940TCONS_00003210-exon-sc0000025-1510915933:889834..889940Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:889429..889552TCONS_00003210-exon-sc0000025-1510915933:889429..889552Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:889121..889167TCONS_00003210-exon-sc0000025-1510915933:889121..889167Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:888863..888953TCONS_00003210-exon-sc0000025-1510915933:888863..888953Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:888541..888574TCONS_00003210-exon-sc0000025-1510915933:888541..888574Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:888375..888395TCONS_00003210-exon-sc0000025-1510915933:888375..888395Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1510915933:887549..887977TCONS_00003210-exon-sc0000025-1510915933:887549..887977Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:895526..895700TCONS_00003210-exon-sc0000025-1491911889:895526..895700Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:895450..895464TCONS_00003210-exon-sc0000025-1491911889:895450..895464Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:890049..890302TCONS_00003210-exon-sc0000025-1491911889:890049..890302Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:889834..889940TCONS_00003210-exon-sc0000025-1491911889:889834..889940Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:889429..889552TCONS_00003210-exon-sc0000025-1491911889:889429..889552Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:889121..889167TCONS_00003210-exon-sc0000025-1491911889:889121..889167Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:888863..888953TCONS_00003210-exon-sc0000025-1491911889:888863..888953Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:888541..888574TCONS_00003210-exon-sc0000025-1491911889:888541..888574Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:888375..888395TCONS_00003210-exon-sc0000025-1491911889:888375..888395Clytia hemisphaericaexon
TCONS_00003210-exon-sc0000025-1491911889:887549..887977TCONS_00003210-exon-sc0000025-1491911889:887549..887977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:887549..895700 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.808	11.5554	13.3999	30.7559	21.4174	12.6317	10.1551	28.5996	6.64512	12.3818	8.00523	10.5252	2.62279	19.071	4.47855	4.80613	14.8262	6.06891	0.00373237	0.00201425	0.00103773	11.1654	4.52144	8.22043	25.4833	38.1867	21.6456	11.5477	0.00174843	13.4199
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019178PtdIns-P2-Ptase
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Biological Process
TermDefinition
GO:0046856phosphatidylinositol dephosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0034597phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046856 phosphatidylinositol dephosphorylation
molecular_function GO:0034597 phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity
Blast
[Close]
BLAST of TCONS_00003210 vs. Swiss-Prot (Human)
Match: TM55B (Type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase OS=Homo sapiens GN=TMEM55B PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.406e-47
Identity = 90/198 (45.45%), Postives = 121/198 (61.11%), Query Frame = 1 
Query:  349 PTVVCRVCQQLIFIRGREGQRVVKCSNCHEATXXXXXXXXXXYIRCPCNALLTCRATSTRISCPRPNCKRVINVGGTPPAATGPMVPNVQAGNNSRIRVTCGHCNETFVFR--TTAHLARCPYCRRVSSVGPKFAKNRAIIFAAIGVLFLTAGVGVTVATLEIAQKNGGVYVVWIGAFIVGLLNLIRSCYYCQMTVSQ 936
            P + CRVCQ LI + G+  Q VVKC  C+EATPIK  P  KKY+RCPCN LL C+ TS RI+CPRP CKR+IN+G   P   GP+ P  Q      +RV CGHC  TF++   T   LARCP+CR+VSS+G ++ + R I    +G+L      G+   T + A++ GG+Y  W    ++ +L L R+ Y+  M VS 
Sbjct:   80 PMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLG---PVHPGPLSPEPQPMG---VRVICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSH 271
The following BLAST results are available for this feature:
BLAST of TCONS_00003210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM55B7.406e-4745.45Type 1 phosphatidylinositol 4,5-bisphosphate 4-pho... [more]
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