TCONS_00003295 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003295
Unique Name	TCONS_00003295
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2440

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000026:915955..927249+
coding sequence from alignment at sc0000026:915955..927249+

transcript sequence

>TCONS_00003295 ID=TCONS_00003295|Name=TCONS_00003295|organism=Clytia hemisphaerica|type=transcript|length=2440bp
atgggtctggttgatatctggtctgtattttcacttactgttaaatctct
aaTACGGTAATATTTTtagggtgaaaaattgaattagaaaattaaagaaa
atgccACGTGAAATTATTACCCTCCAGGTCGGACAATGTGGAAACCAAAt
tgggATGGAGTTTTGGAAACAGCTTTGTGCTGAACATGGTATAAGCCCAG
AGGGCATGTTAGAAGACTTTGCTACAGATGGCACAGATCGAAAGGATGTC
TTTTTTTATCAGgCTGATGATGAGCATTATATACCAAGGGCAGTCTTACT
TGATTTGGAGCCGAGGGTCATAGATTCTATAATGCAATCCCCTTACGCCA
ATTTGTACAATCCAGAGAATATTTACACGTCTAAAGATGGCGGTGGTGCT
GGAAATAACTGGGGTCATGGTTTCACACAGGCAGAAAGTTTGCATGAAGA
TATATTTGATATAATTGATCGTGAAGCTGATGGCAGTGACAGTCTTGAGG
GTTTTGTTTTGTGCCATTCGATTGCTGGAGGCACAGGTAGTGGAATGGGT
TCATACATGCTTGAGAGAATCAATGACAGGTATCCCAAGAAATTGATTCA
AACATATTCAGTTTTCCCACAACAAGATGATATCAGCGACGTAGTAGTGC
AACCTTACAATTCAATGTTGACCTTGAAACGGTTGACACAGAATGCTGAT
TGCGTGAATGTTCTGGATAACACTGCATTGAACAGGATAGCTGCTGATCG
TTTACACATACCTAACCCAACCTTCTCACAAGTCAACCAACTGGTTTCAA
CGATTATGGCTACAAGTACCACTACACTAAGATACCCAGGTTACATGAAC
AACGATTTGATTGGCTTGATCGCTTCTCTCATTCCAACATCTAGATTGCA
TTTCTTGATGACTGGTTACACACCCCTCACTACGGATCAGAAGACAACGA
GCGTACGGAAGACGACAGTTTTGGATGTCATGAGACGTTTGTTGCAGcCG
AAAAACATGATGGTAGCCACACCACGCGACCGAAAGAGAAACCATTGTTA
TATTTCAATTCTGAACATCATCCAAGGTGAAGTCGACCCTACCCAGGTTC
ATAAAAGTTTGCAAAGGATTCGTGAGCGAAAGTTGGCAGAGTTCATTCCT
TGGGGACCAGCCAGTATTCAGGTTGCGTTGAGTCGCAAGTCACCTTACAT
CCAGACAGCTCACCGTGTCAGTGGATTGATGTTGGCCAACCATACAAGTA
TCGCATCTGTTTTCGAGAGGACTTGCAAATTATACGACAAATTACGAAAA
CGTGAAGCCTTCTTGGAACAatacaaaaaagttgatatGTTCAAAGACAG
CCTGGACGAATTAGACAATTCAAGAGAGATTGTTCAACAGTTGATCGATG
AATATTACGCTGCCACCAAACCAGACTACATTCAATGGGGAACGCAATCT
CAAACTTAGAATCGCTACAATACCTTACAATTAATCGCGGACTTTTAATG
AGCTGTTCtagatattatttatttttaatatagACACCATATTCCTAAAT
GATAAGATGGTAAAGTCAGAGTTATTGTGCCACATAAATGATTTGATTGG
AATTTTTGTAATGACGATTTGGCTATATCAGTTGTCCGGGGTTAAATATG
AGATAACAAATCAATGTCCGGGGTGGGTTTCTGACCAATGTTATCAGTGA
ATCTCCCTCTGCACCGTTAGTATCACAGTGTATGGATATTACACTGTGTA
GACGGATAAGAATTCTATTGAGCTCTCAGGAAatacaaaagtaaccatga
caatCACCCAGGATCTTCGAGGAACGCCttgccaatcaaatcacaagtta
gaaaagtaaaaaaagtttcaatgcAAAAAGAGCTAACTGAAGTAGTAGTA
AATGTCAAGTATAATTTCATGAAATGGTGAAAGTTTGGATTTTTAAAATG
GAAGGGTTCGTCtgtaaagtttgtttactcaaCTAGGTTGGGTTCCGACC
GTTAAAATGGGTTTCGGCCGATAGGTTGGGCTTTGACCGGTAAGTTAGGT
TTCGGCCGCTCAAGTTAGGTTGCGGccgctgacggaaaaaaaacGCTTCG
GTGTTAAGCATATTTCTTAGATATTGATTTGACTTAGACTTAAGCATATA
GTCTAGGTGATCGAAACGATTCGAGTAGATTTACATATTATTCCCTGAGA
TCAGTTAATTTTCCATTTGGAAGAAGAACTGAGAACGTTGATAGTTTGGT
aggattttgtactttttttggTACTGTGATTTGTAAAACAAACTTAATAA
TTTTTAGACTCATTACATTCTTTGTAAATACATTTTTTGTTATATTTCGA
TGTTTGTATATTTTTAGGTTTAGTGTTCCTATggttaattttcttttctt
cgtttttaccgaaaataaaaaacatatttaaattaaaaaa

Run BLAST on NCBI

protein sequence of TCONS_00003295-protein

>TCONS_00003295-protein ID=TCONS_00003295-protein|Name=TCONS_00003295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MPREIITLQVGQCGNQIGMEFWKQLCAEHGISPEGMLEDFATDGTDRKDV
FFYQADDEHYIPRAVLLDLEPRVIDSIMQSPYANLYNPENIYTSKDGGGA
GNNWGHGFTQAESLHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMG
SYMLERINDRYPKKLIQTYSVFPQQDDISDVVVQPYNSMLTLKRLTQNAD
CVNVLDNTALNRIAADRLHIPNPTFSQVNQLVSTIMATSTTTLRYPGYMN
NDLIGLIASLIPTSRLHFLMTGYTPLTTDQKTTSVRKTTVLDVMRRLLQP
KNMMVATPRDRKRNHCYISILNIIQGEVDPTQVHKSLQRIRERKLAEFIP
WGPASIQVALSRKSPYIQTAHRVSGLMLANHTSIASVFERTCKLYDKLRK
REAFLEQYKKVDMFKDSLDELDNSREIVQQLIDEYYAATKPDYIQWGTQS
QT

Run BLAST on NCBI

transcript from alignment at sc0000026:915955..927249+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003295 ID=TCONS_00003295|Name=TCONS_00003295|organism=Clytia hemisphaerica|type=transcript|length=11295bp|location=Sequence derived from alignment at sc0000026:915955..927249+ (Clytia hemisphaerica)
atgggtctggttgatatctggtctgtattttcacttactgttaaatctct
aaTACGGTAATATTTTtagggtgaaaaattgaattagaaaattaaagaaa
atgccACGTGAAATTATTACCCTCCAGGTCGGACAATGTGGAAACCAAAG
TaagttttttaacattttttctatATATAACAAAAGTTATTTcccaaaat
ctttttcctttacaaaaataaaaaaacctttgttcaataaactttcattt
caaatttttagttgggATGGAGTTTTGGAAACAGCTTTGTGCTGAACATG
GTATAAGCCCAGGTAaggatttattttttgtatgtCGTCTTTTTTGTCAA
AACGTAAAATTTATGTTGAGAAGTATCCTAAATCTGAGCACCTTTTGGGC
ATTGGGGCATATAAATCAGAATGAAGTCAAAATTTCCACTAGAGGGAATA
TCTATCTTTGTGAATTGTGAaggtttgtaattttttcttaccAGCTATTT
GGATAAACTTGACTTTTTACAATGCTACTAGCagttaaattttcaaatgt
gTGTGTATTTTAGAAACGCATTTTGTTCGCTagacaaaaattgaaatgtt
ttaatttcttaTTCTTTCGATAATTTTTTTAGAGGGCATGTTAGAAGACT
TTGCTACAGATGGCACAGATCGAAAGGATGTCTTTTTTTATCAGGTTAAA
AAGACTTACTCTTTCTGTACCAAATCACACACATAGTTAttcttaaaaga
atttttttctctaatttcTGCTCTGatctttgatctttttcttttctagg
CTGATGATGAGCATTATATACCAAGGGCAGTCTTACTTGATTTGGAGCCG
AGGGTTTgtattatttcaaatttacaaaaaaaactttttaggtattgttt
tAACTTTGCCCGTCTTTATTTAATGATTGGTTTTAGCAGGTTTTAGCTCA
ACTAATGTTTATTAAGTTTTGAATACAAAAGGATGGactcaaagtttttc
ttttacagGTCATAGATTCTATAATGCAATCCCCTTACGCCAATTTGTAC
AATCCAGAGAATATTTACACGTCTAAAGATGGCGGTGGTGCTGGAAATAA
CTGGGGTCATGGTTTCACACAGGTTACAATTAAATTCAAGAATGTTGTTT
TCAGTATTTTGAATAAGATTTCATTTATTTATGGATTATGAAAAATTACC
ATGCAACATTCCTGTTCAGGGGATTCATTaccttttttaaagaattgaaa
acaaattgTGTAGCAGTTGAAATCCACATCTTTTTAACAAGTAAATTATC
ATCACCATTCATCCTAGAATGATctcttattcatgatatgcaccactgca
atgtcttctgacattacatcatggacccaacagctgattggttgtaagtg
acgtataaTCAGCCAATACGtcaactttcaaccaatcaactattgagtgg
aatggaagacattgcaatggtgcatatcatgaataatatCCAACCTAtac
ttagaccatgttcacacgttactgttccgtttcgctctggtttgattttc
gttacggatcgagtacGTGTTGATATGGTTTTGGAactttcggagcaaga
aaaccaagcagttccgttccaatgaaaaaagtggagcgaaaccgtatCGG
TAtcttttgctttgtaacgtcttcttttttgacgttcacacttgtttcag
AACCGTTTTGTTTTGGGATGGAACAGAACCGtgacgtctgaacatggtct
tagttTTATAATTAATACCAAGGCTGTTTGCAGTGATTACTTTCTGGAAA
ATCCCGATCCTTTAAAAAGCAAAGTGCTCATTCAAGGTTCTACcagaata
tttttagaaatctaAATATTGTTACTTTCTTATTAAAATCAGGCAGAAAG
TTTGCATGAAGATATATTTGATATAATTGATCGTGAAGCTGATGGCAGTG
ACAGTCTTGAGGTTTGGTTTTTAACAgctttactttcgttttgaatgGTT
TATAGAATTTAATCATTAGTAACATTATTATGATGTATACAAGCTAACAG
GCCCGAGGTGGACCTACGTTTTGATTTTTGTCATATGATTTTTTAGACGT
GGCTTTTTCTATCGCTTTCAAATTTTGGCTACAAAAACTGACTTCTCCAC
CACTGGACCAAATTTTTAACTAAGTCTTTCTTCTTTACACGTCTTACAAT
GAGAAAGGAATTGTTGAGTCAAAATTTGGTACAGTTTTATCCATTCATGC
CCTTATAATGATTTACACGTCATTTCTTTTACAACCACatctaaattgta
aaaaaaagaccattaaaaaaacacctttgaaatTCATTAACTCATACTTT
TATTTCCAGGGTTTTGTTTTGTGCCATTCGATTGCTGGAGGCACAGGTAG
TGGAATGGGTTCATACATGCTTGAGAGAATCAATGACAGGTAAATTGTGA
TTTTTAAAGTCAAGATGTACAAATACAGCCTTTCTAATTCAGAATCTTGG
TTCTATAGTACAGTAAGTCGGCAAAACCAACCAAACCAAACCAAAATGGG
AAATTAATGGAAAATACCTCCTCCATTAGTGGTGGAATGTAAGAAAAATG
TATTGTACCGCTCTAAAATAAAAGCTGTCTGTTTTTAggacaattttttc
tttttttgatattttcaaccTCCCCCATTAAAAAGCAGGTGgtgatttga
aaacaatttgattttaaaatatCAGGCTCTGTTTAAATACTTCCCGTTAT
TTAGGTATCCCAAGAAATTGATTCAAACATATTCAGTTTTCCCACAACAA
GTACGTATTTCCAACACTATTGACTgctttttctaaacattttttttgaa
ttgaatattaATTGATTTTTATGAAGATAAATGGCACACGAAAAGTTAAG
TTAAAATCTTCCCATCTCCAGGAAAGTGTTCAATTGTCaaaagtcataaa
actaaagaaaaagaaacagaaTTCTTTCTCAACTCGTAAACGAATAAAGC
TTCCAAACGTCATATCTCAGTAATTCTGATTCCGAGCGTTATATTTAGTT
TCCTTATTCCTTCCGATGAGTTCGTTTTCCTGTATCTATTCGAGTTGTTA
aagtatttatatattttatacacgcagcatatacattatataacactttt
cttgtaagaagaaccaatattTTTGGAGATCATAAtgaaataatgttaaa
aaaagtaACATATTCTGGATGCTCTTTTCTTTTTAGGATGATATCAGCGA
CGTAGTAGTGCAACCTTACAATTCAATGTTGACCTTGAAACGGTTGACAC
AGAATGCTGATTGCGTGAATGTTCTGGATAACACTGCATTGAACAGGATA
GCTGCTGATCGTTTACACATACCTAACCCAACCTTCTCACAAGTCAACCA
ACTGGTATATACCTTCATCACTCTTAGTACACACTcgttaactttttttc
tatttcgaattattttatttacttCGAATTTTTCTCAGACATTTTTAGTA
GTATAAACTTAACTTTTAATTGGTCTTTATTTTCAAAGGTTTCAACGATT
ATGGCTACAAGTACCACTACACTAAGATACCCAGGTCTGTGTCTTCTCCA
TTGTTACTTACTTACGGACAATACAACGTTTATGACCACGTTCAGACGTT
ACTGTTCCGtatcgttccgaaacgaaacggttccgaaactaGTGTGAACG
GCAAAAttcaaaacctcaaaaaaagaagacgtgacaaagcaaaacagatt
gaaacggtttcgctccactattttcatcggaacggaactgctccgttttc
ttgctccgaaacgttccgaaaccaatatgaacactctcgatccgtaacgg
aAACCATACCGGggcgaaaccgtaacgtctgaacatggtctatgTAATAG
AATTTTGGTCCGATTATTgtcatttctttttttactaTGGCTACGTTGAG
TTGTCGACTTTACATCCTCTGAACTTGTGCTATCGATTGCAGTAAAAAAC
TTTTAGACTTCGAGGTAATCTTTGTCACTACATGACGTCAGAACTCGGTG
GGAACAGAGCAATGTGGCTTTAAAATCACTAAATATTGATTGCGTTCGTT
CATTTAACTAATCTTTCGAGTTAGGTTGAACGAACGTGCTCGTTTGCCTC
TTGAAATAATGGAATCTCATTGGTCGGAAAGTTTACCACACGACTTTCAG
TGGTGAAGAATTTAGATAAACATAAAGTGATCCATATTTCTATTTTAGGT
TACATGAACAACGATTTGATTGGCTTGATCGCTTCTCTCATTCCAACATC
TAGATTGCATTTCTTGATGACTGGTTACACACCCCTCACTACGGATCAGA
AGGTTTGAATGTCTCAGTGATTATGAAGCATCCGTACTTTTAAAGTTGTT
AGGTTGCTTTTATTGAATTCGATGAACTAATTTTCGTTCGCCAAATTTAG
CTCTCGCCAAGATTAAAAATTGCGCTACTCGCTAAACGCCAAAATAAGTT
GTactccaaaattaaaaaattacgtCACTGTActcgccaaaatttaaaaa
ttttgttactcaccaaaataagttctcgatTAGTTCTACACTTTTCgctt
ttcaccaaaattagttccttttAAAAAGTAACTTTCTACTGTGTATTACT
TCACTAATAACAAACAGAGAACTTCCCCATCCTTAATAAAGATTAGTTCT
ttaaatcaaaaaactttttaatatgATACtcatttaaaacatttttcctg
TTTCTGTTTTTCAGACAACGAGCGTACGGAAGACGACAGTTTTGGATGTC
ATGAGACGTTTGTTGCAGGTACGCGTGCTCCTCACCAGTCTTTGATTTCA
CGATTTATTTCATTCAATCCTTATATTGAATCACCATGGTTGTTTTCATC
ATAGTTATATTTTGTATCTCATCTTACCccctttcttttgtttcagcCGA
AAAACATGATGGTAGCCACACCACGCGACCGAAAGAGAAACCATTGTTAT
ATTTCAATTCTGAACATCATCCAAGGTGAAGTCGACCCTACCCAGGTAAT
acatcattttttaactttttactgTGTTAAAAGCTCTTCTTTCAGTGAAG
TATGTAAAGAGTCTCcaaattctgcataatttacCTAAATTTCAAGAGTG
TTAAATGACTGtgtgaaatttattttccatCTCAGACGAAAAACCTCGCT
TTCACCActgtttttgaaaaacatatttgGATTATAACATTTTATTGTGA
CTGAATATATTATATCAGGAGCatgatttattttgatattcCATTCAGGT
TCATAAAAGTTTGCAAAGGATTCGTGAGCGAAAGTTGGCAGAGTTCATTC
CTTGGGGACCAGCCAGTATTCAGGTAAAGAGACGTCTCACTggatgtttt
ttgttgttttttaatgCATTTAAATGGCCTTCGAAGAGTTAGTTATTGAC
TATGTTTAAATGTAATGTGATTATTTTGCTTTGCAAAATGTTTAACGATT
ATCTCGTGTTTTAGACATGTCCCATATACGTTTATATAAGATAGTTGCAT
TGCAGCAAGATGAAAATTTTGCATAGACGTTATATTGAATTAATCTGGAA
GTactgatttttggacctaccgggaggtcctttaatttgtccgttgtccg
ttcgtctgttacaagcttttctcgggattggctcgttagtttttttttat
tttttgtacaatgatacaaaatagcaatgcctgaaaagtgacggagcccg
atttttgaaaaaaaattttggggggcaaatttgggccaaaaaatacctaa
agatgtttttttttgtgtgaaattgcttcattagttttttctgatttttt
tcataaagatagaggttctctaaaaagtggctcaaGTAGNggactttgtg
caaaattgcttcattagtttttcctgatttttagcagaaagatagagtgt
aagataccctaaaatgtggccgAAGTAATATttgtcgaaaaaattttttt
cgtcgtgaaatacggattttcgcaaaatttgggccaaaaactacctaaaa
ataaggttttttggacttggtgcaaaattgcttcattagtttttcctgat
ttttggcagaaagatagagtgcaaggtaccctaaaatgtgcctgaagtaa
tttttcgtcgtaaaatacggattttcgttttttggggaaattccctttta
ccattttcctgttagcagcttttctcgggattagctcattagtttttttt
aattttttgcacaatgatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctacc
taaaaataaggttttttggactttgtgcaaaattgcttcattagtttttc
ctaatttttggcagaaagatagagtgcaaggtagcctaaaatgtggctga
aataatttttctcggaaTAATTATAATTAATTATTAATTATAATCATaat
ttttttggccgtaaaaatcggattttcttatttggggaaattcccttata
tcatttttagggaaaaagagcatttctcgcgattggattaatattttttt
ctaaatttttgcactttgatgtaaaatggtaatatttaaactCTGATGAA
GCCTGATTTtcgtaaaataatttttttgggcaaatttgggccaaaaagtg
cctaaaaatgggatttttggactttgtgtgaacttgcttcattagttttt
tctgattttttggacaaagatgaagggtaaggttctctaaaacgtgactg
aagtagtttttttcgcaaaatttattttggctgtaaaaatcggattttct
tatttggggaaattcccttttgtcatatttagggaaaatgagtatttctc
gagattggcttggtatttttttcttattttttgtatagtgatataaaatg
gtaatatgtAATGGTAATTTGGGTAGAAAAGTGCCTAATGTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactttt
ttgactaatttgagctctgatactcacggtaatctattcaagctgctcac
tacactttcttattcccttgctatttgtcctattttttctgattttgatc
aacaggtaggtccattcaacaTGTTGCTTGTTTAGCCTTTGAAAGACTTA
AATGTACGAAAAAAAAAGCTGAACAACTGTTTGAAGCCTGAACTTTTCGC
AGAGATATATATAACTAACTGAGGCTGAACCAAAACATATTAGATCTTAT
AATCAATGCGTgtattgactttaattttcatCATTCTGACAGGTTGCGTT
GAGTCGCAAGTCACCTTACATCCAGACAGCTCACCGTGTCAGTGGATTGA
TGTTGGCCAACCATACAAGTATCGCATCTGTAAGTTCTTATCCCTAAAGA
AGCTCAACTGGCACAACAATCTAACTTTCTAACTTATGAAATGACCatgt
aatgggcttttccagaaatagtccgtgcccccccctgttgaggatatcgg
atatccaggggttaaatatctacaagggagcggatatccaggggtaaagt
gtcttttcaagtaaaaactactatatccagggggtaagcatctttataag
agaggatatccagggggtttttactaataaagtaggatatccagggggtt
cgatacttcgaaaaatcagtatcctcaacagtgggggtaaaaattttttc
tggaaaagcccaatgccGTAAGAAAAGAGACGTTCTTTTCAATTCTTCGT
TGGAGACAATAACAACACAGTTTGTTCATGATGTAAATTGGTATCTGCCA
GAATCCGAAAATAAACTTTGTTTCCCGTATCTGCGAGTCGGGAAGCCCTG
CTTACGTGGCACGGCGTGGGTTTCCCGTCACTTCCGTTTCTTCATTATCA
GTTTGATTTTTTCCACGTCCTTAAAAGAGAGACTCAAGTTTCAACTGAGA
CTTCCTAAGTCGATTTCATTGTGCCGTAAACAAAATAGTTATATGGAGAA
TGCCTTTTTGTGGTCAATGACTTCAAATTACAATAATATGCATTGTTTCA
GGTTTTCGAGAGGACTTGCAAATTATACGACAAATTACGAAAACGTGAAG
CCTTCTTGGAACAatacaaaaaagttgatatGTTCAAAGACAGCCTGGAC
GAATTAGACAATTCAAGGTAAGGAGGCTAAAATCTTATATTCAAAAAATA
TCGTAGCAATATTTGACCACCGTTCACTCAGTGTGGtggaaatatttcat
aattttgatagaatttcaaaatctaGTTTTCAGCGTTTAAATCAATTTAG
GATAATTTTTTCTATcattacattttcctttgaggTAAAATTATAACGGC
AGATTGGTTTTGGCAcacttttttggttttgaagcGGTCTCACTGTCTAT
TCTTATTTAacttaaaacgaaaaaaaaaaacgatttacCGGAAagtttgt
gtgatcttcttgcTAAGTAACCTTCAAAATATCAGAGGACATCTTTCGTG
GAAAGAATCAAATGTTTAACAAGTATGTACAGACAAAGGTTGTCCCTTGA
TTTCAGAACACATCaattttattggacctaccccggtggggtggaggtcc
tataaattaacctttgtccgttcgtctgttcgtccgttcgttcgttataa
gctctcctcgtgattggctcattagttttttctgattttttgcacaaaga
tgtgtaactataaaccctcgaatgtgacggagcccgattttcgaaaaaaa
aATTTTTTGGGCAAATTTAGGCCAAataacggctaaaaaacggttttttt
ggatCATTGAcactgattttttgcatgaaagtagggtaccatcataggta
aaagatggctcaagcagatttgttcaaaaaaattttgttgggtcaaaaaa
cgcatgtttatctataagaatcactattaataagcatacatcaatgttct
tagttaaagttactcaatttttttatgagatggatttttttttgctcatg
agggcttacttttgaagaatgtgtgtgtttagacgttaaattttggtttc
ttggcgtgtttttatagaaaaactggccaaattcaatatttatttataag
cacattatcaattacttaggtattagcttttctcgagattggctctttga
ttctttatgattttttgcacaaagatgcataactataaaccctcgaatat
gtgacggagcctgactttcgaaaaaaaaaatttttgggcaaaatttgggc
caaaatacggctaaaaaacggtttttttggactttgtgaaaaattggatc
attaactttttctgattttttgcatgaaagtagagtaccatcataggtaa
aagatggctcaagcagattttttcaaaaaaaatttgttggctcaaaaacg
catgtttatctataagaatcactattaataagcatacatcaatgttctta
gccaaattactcaattttttgacgagatagatgttttctttgctcacaat
atcttgaatatgaaagaatatttcaagagcatgaaattttggtttctaaa
cgttttttttataagaaacaaacgactaattttaatagatcgtcctggat
cgtcactatttgtgttctgaatgattgtttaatggtcacgctcacgtaga
tatcaattatatacgTGTTTAAATGCAaaaaccaggtaggtccataaaag
tatcacttgtttaataTAAAAGTTAAACATTAGACCTACGGTATCATAGA
AGGTGTTTCTAAACTGTATTATTAATTTTGTATGAAAATTCAGTAGGATA
ACAAAATGTATTATCTTTTCCTTTCACAGAGAGATTGTTCAACAGTTGAT
CGATGAATATTACGCTGCCACCAAACCAGACTACATTCAATGGGGAACGC
AATCTCAAACTTAGAATCGCTACAATACCTTACAATTAATCGCGGACTTT
TAATGAGCTGTTCtagatattatttatttttaatatagACACCATATTCC
TAAATGATAAGATGGTAAAGTCAGAGTTATTGTGCCACATAAATGATTTG
ATTGGAATTTTTGTAATGACGATTTGGCTATATCAGTTGTCCGGGGTTAA
ATATGAGATAACAAATCAATGTCCGGGGTGGGTTTCTGACCAATGTTATC
AGTGAATCTCCCTCTGCACCGTTAGTATCACAGTGTATGGATATTACACT
GTGTAGACGGATAAGAATTCTATTGAGCTCTCAGGAAatacaaaagtaac
catgacaatCACCCAGGATCTTCGAGGAACGCCttgccaatcaaatcaca
agttagaaaagtaaaaaaagtttcaatgcAAAAAGAGCTAACTGAAGTAG
TAGTAAATGTCAAGTATAATTTCATGAAATGGTGAAAGTTTGGATTTTTA
AAATGGAAGGGTTCGTCtgtaaagtttgtttactcaaCTAGGTTGGGTTC
CGACCGTTAAAATGGGTTTCGGCCGATAGGTTGGGCTTTGACCGGTAAGT
TAGGTTTCGGCCGCTCAAGTTAGGTTGCGGccgctgacggaaaaaaaacG
CTTCGGTGTTAAGCATATTTCTTAGATATTGATTTGACTTAGACTTAAGC
ATATAGTCTAGGTGATCGAAACGATTCGAGTAGATTTACATATTATTCCC
TGAGATCAGTTAATTTTCCATTTGGAAGAAGAACTGAGAACGTTGATAGT
TTGGTaggattttgtactttttttggTACTGTGATTTGTAAAACAAACTT
AATAATTTTTAGACTCATTACATTCTTTGTAAATACATTTTTTGTTATAT
TTCGATGTTTGTATATTTTTAGGTTTAGTGTTCCTATggttaattttctt
ttcttcgtttttaccgaaaataaaaaacatatttaaattaaaaaa

Coding sequence (CDS) from alignment at sc0000026:915955..927249+

>TCONS_00003295 ID=TCONS_00003295|Name=TCONS_00003295|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000026:915955..927249+ (Clytia hemisphaerica)
atgccACGTGAAATTATTACCCTCCAGGTCGGACAATGTGGAAACCAAAt
tgggATGGAGTTTTGGAAACAGCTTTGTGCTGAACATGGTATAAGCCCAG
AGGGCATGTTAGAAGACTTTGCTACAGATGGCACAGATCGAAAGGATGTC
TTTTTTTATCAGgCTGATGATGAGCATTATATACCAAGGGCAGTCTTACT
TGATTTGGAGCCGAGGGTCATAGATTCTATAATGCAATCCCCTTACGCCA
ATTTGTACAATCCAGAGAATATTTACACGTCTAAAGATGGCGGTGGTGCT
GGAAATAACTGGGGTCATGGTTTCACACAGGCAGAAAGTTTGCATGAAGA
TATATTTGATATAATTGATCGTGAAGCTGATGGCAGTGACAGTCTTGAGG
GTTTTGTTTTGTGCCATTCGATTGCTGGAGGCACAGGTAGTGGAATGGGT
TCATACATGCTTGAGAGAATCAATGACAGGTATCCCAAGAAATTGATTCA
AACATATTCAGTTTTCCCACAACAAGATGATATCAGCGACGTAGTAGTGC
AACCTTACAATTCAATGTTGACCTTGAAACGGTTGACACAGAATGCTGAT
TGCGTGAATGTTCTGGATAACACTGCATTGAACAGGATAGCTGCTGATCG
TTTACACATACCTAACCCAACCTTCTCACAAGTCAACCAACTGGTTTCAA
CGATTATGGCTACAAGTACCACTACACTAAGATACCCAGGTTACATGAAC
AACGATTTGATTGGCTTGATCGCTTCTCTCATTCCAACATCTAGATTGCA
TTTCTTGATGACTGGTTACACACCCCTCACTACGGATCAGAAGACAACGA
GCGTACGGAAGACGACAGTTTTGGATGTCATGAGACGTTTGTTGCAGcCG
AAAAACATGATGGTAGCCACACCACGCGACCGAAAGAGAAACCATTGTTA
TATTTCAATTCTGAACATCATCCAAGGTGAAGTCGACCCTACCCAGGTTC
ATAAAAGTTTGCAAAGGATTCGTGAGCGAAAGTTGGCAGAGTTCATTCCT
TGGGGACCAGCCAGTATTCAGGTTGCGTTGAGTCGCAAGTCACCTTACAT
CCAGACAGCTCACCGTGTCAGTGGATTGATGTTGGCCAACCATACAAGTA
TCGCATCTGTTTTCGAGAGGACTTGCAAATTATACGACAAATTACGAAAA
CGTGAAGCCTTCTTGGAACAatacaaaaaagttgatatGTTCAAAGACAG
CCTGGACGAATTAGACAATTCAAGAGAGATTGTTCAACAGTTGATCGATG
AATATTACGCTGCCACCAAACCAGACTACATTCAATGGGGAACGCAATCT
CAAACTTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001832	XLOC_001832	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003295-protein	TCONS_00003295-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000026	supercontig	sc0000026:915955..927249 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.2907	49.9767	120.149	126.637	50.0526	36.6036	49.3945	54.9247	42.4108	47.0047	32.5693	35.4627	22.3987	22.5048	25.8793	30.9219	38.533	39.546	15.5294	24.5349	25.1691	26.094	31.1057	30.2854	31.5005	34.3589	19.7772	15.7544	20.8802	22.6016

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000217	Tubulin
IPR002454	Gamma_tubulin
IPR003008	Tubulin_FtsZ_GTPase
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR017975	Tubulin_CS
IPR008280	Tub_FtsZ_C

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process
GO:0007020	microtubule nucleation
GO:0031122	cytoplasmic microtubule organization

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule
GO:0000930	gamma-tubulin complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031122	cytoplasmic microtubule organization
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0007020	microtubule nucleation
cellular_component	GO:0000930	gamma-tubulin complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Blast

[Close]

BLAST of TCONS_00003295 vs. Swiss-Prot (Human)
Match: TBG1 (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 810.061 bits (2091), Expect = 0.000e+0
Identity = 387/451 (85.81%), Postives = 422/451 (93.57%), Query Frame = 2

Query:  101 MPREIITLQVGQCGNQIGMEFWKQLCAEHGISPEGMLEDFATDGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIDSIMQSPYANLYNPENIYTSKDXXXXXXXXXXXFTQAESLHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYMLERINDRYPKKLIQTYSVFPQQDDISDVVVQPYNSMLTLKRLTQNADCVNVLDNTALNRIAADRLHIPNPTFSQVNQLVSTIMATSTTTLRYPGYMNNDLIGLIASLIPTSRLHFLMTGYTPLTTDQKTTSVRKTTVLDVMRRLLQPKNMMVATPRDRKRNHCYISILNIIQGEVDPTQVHKSLQRIRERKLAEFIPWGPASIQVALSRKSPYIQTAHRVSGLMLANHTSIASVFERTCKLYDKLRKREAFLEQYKKVDMFKDSLDELDNSREIVQQLIDEYYAATKPDYIQWGTQSQ 1453
            MPREIITLQ+GQCGNQIG EFWKQLCAEHGISPEG++E+FAT+GTDRKDVFFYQADDEHYIPRAVLLDLEPRVI SI+ SPYA LYNPENIY S+ GGGAGNNW  GF+Q E +HEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSG+GSY+LER+NDRYPKKL+QTYSVFP QD++SDVVVQPYNS+LTLKRLTQNADCV VLDNTALNRIA DRLHI NP+FSQ+NQLVSTIM+ STTTLRYPGYMNNDLIGLIASLIPT RLHFLMTGYTPLTTDQ   SVRKTTVLDVMRRLLQPKN+MV+T RDR+ NHCYI+ILNIIQGEVDPTQVHKSLQRIRERKLA FIPWGPASIQVALSRKSPY+ +AHRVSGLM+ANHTSI+S+FERTC+ YDKLRKREAFLEQ++K DMFKD+ DE+D SREIVQQLIDEY+AAT+PDYI WGTQ Q
Sbjct:    1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 451

The following BLAST results are available for this feature:

BLAST of TCONS_00003295 vs. Swiss-Prot (Human)

BLAST of TCONS_00003295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBG1	0.000e+0	85.81	Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=...	[more]

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TCONS_00003295 (transcript) - C. hemisphaerica