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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003304 ID=TCONS_00003304|Name=TCONS_00003304|organism=Clytia hemisphaerica|type=transcript|length=4162bpRun BLAST on NCBI protein sequence of TCONS_00003304-protein >TCONS_00003304-protein ID=TCONS_00003304-protein|Name=TCONS_00003304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp MPATSLINSHVTDLDFASREEERFNNFYEDILSLHELLDQIQNISLRRQFRun BLAST on NCBI transcript from alignment at sc0000026:133097..163455- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003304 ID=TCONS_00003304|Name=TCONS_00003304|organism=Clytia hemisphaerica|type=transcript|length=30359bp|location=Sequence derived from alignment at sc0000026:133097..163455- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:133097..163455- >TCONS_00003304 ID=TCONS_00003304|Name=TCONS_00003304|organism=Clytia hemisphaerica|type=CDS|length=1839bp|location=Sequence derived from alignment at sc0000026:133097..163455- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003304 vs. Swiss-Prot (Human)
Match: AGAP1 (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4) HSP 1 Score: 238.039 bits (606), Expect = 1.270e-64 Identity = 131/325 (40.31%), Postives = 194/325 (59.69%), Query Frame = 2
Query: 1724 PATPVIKKKTHRRQKSFAASKESGLDGRATDTEDSDHQFTLVYYDGRTCDFECPTMEDRDAWVSAIETQILKAFELQKSKTDLTSDSKNENEVIPNSPCIS-DLLKSIPGNDQCADCGSKDAEWASLNLGILICIECCGVHRNLGSHLSRVRSVMLDDWPPETIRTMKSLGNKVANQIWEANLNSRQKITPTASREERDLWIASKYEKKEFLDSVP---KNTSQELFNLVEKEDVPGCYRLLISSTGKDVNQLTPWGGEG-GKIQISPLHLSCLKGNAPITQLLLWYRADARLLDSEHFKPIHYAYKSKDKLVIDLLSQYAGPED 2683
P +P +K HRR+KS + K GL G A + E+ + +F +V G+T FE T E+RDAWV AIE+QIL + + +S SKN++ + S ++ ++++ GN C DC +++ WASLNLG L+CIEC G+HRNLG+HLSRVRS+ LDDWP E I+ M S+GN++AN +WE + R K + ++REE++ WI +KYE+K FL +P + Q L ED+ LL + +VN+ GEG G+ + LHL+C KGN + QLL+WY D D+ + YA ++ + ID+L QY P++
Sbjct: 519 PPSPHANRKKHRRKKSTSNFKADGLSGTAEEQEE-NFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCES-------SKNKSRLTSQSEAMALQSIRNMRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPVELIKVMSSIGNELANSVWEESSQGRTKPSVDSTREEKERWIRAKYEQKLFLAPLPCTELSLGQHLLRATADEDLRTAILLLAHGSRDEVNETC---GEGDGR---TALHLACRKGNVVLAQLLIWYGVDVTARDAHGNTALAYARQASSQECIDVLLQYGCPDE 829 HSP 2 Score: 218.394 bits (555), Expect = 2.460e-58 Identity = 156/434 (35.94%), Postives = 230/434 (53.00%), Query Frame = 3
Query: 141 EEERFNNFYEDILSLHELLDQIQNISLRRQFRDIINKVEDDFSNDVDFTTPRCCQYNTLRXXXXXXXXXXXXXXIQRYITGTNPKEDVMPG-KHKKTVTIRGQSNLLLIRDETGPPDYFFSLWADAVVLVFSLSDEHSFNVISSYYAKMITYRNENTNLLPCILVGIKDDSIINDNLSDGSGNHPGVAETRVKKFISDHRKCPYFEVSLETGENVNEVFQTGAEKISIL---QNLTPG------GGTSHDQLMSASFTSLNTLDSERGLGS-------------------------SFNGSHSSFKKNKRRNTLFSLNAXXXXXXXXXXXXXXXXXXVTYDDIGSGRSIPIKQGNLYKRSSGSL-KEWKKKFVVVTDDQTFQYYPSMKNYMEDEHVKAFKLIHTTVKTPGKRGSKPSQSTPHKGHRRSLSTNNL 1334
E +RF + + +I S++ELL++++ L+ Q R+ + +ED F N ++T R L++G++G SGKS+L+ RY+TGT +E+ G + KK + + GQS LLLIRDE GPP+ F++W DAV+ VFSL DE SF + YY++M YRN T+ +P +LVG +D + S N + + R +K +D ++C Y+E G NV VFQ A+KI Q L+ G SH + SA ++++ + G GS + N K++KRR+ LF+ ++K E D IGSGR+IPIKQG L KRS SL KEWKKK+V + D+ Y+PS+ +YM++ H K L+ TTVK PGKR P ++T S TN L
Sbjct: 16 EIQRFESVHPNIYSIYELLERVEEPVLQNQIREHVIAIEDAFVNSQEWTLSR--SVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEAQFAMWVDAVIFVFSLEDEISFQTVYHYYSRMANYRN--TSEIPLVLVGTQD--------AISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQDVAQKIVATRKKQQLSIGPCKSLPNSPSHSSVCSAQVSAVHISQTSNGGGSLSDYSSSVPSTPSTSQKELRIDVPPTANTPTPVRKQSKRRSNLFTSRKGSDPDKEKKGLESRA------DSIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHDYMQNVHGKEIDLLRTTVKVPGKR---PPRATSACAPISSPKTNGL 428 The following BLAST results are available for this feature:
BLAST of TCONS_00003304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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