TCONS_00003407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003407
Unique NameTCONS_00003407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003407 ID=TCONS_00003407|Name=TCONS_00003407|organism=Clytia hemisphaerica|type=transcript|length=1452bp
TATAGTAtgttttgaagttttaaaaAGCAACATGGCTGTCCCAGATGAAC
AATCAGGCTTTAGATGGTTGAGTGAATATGAAAAGACCTGGGAGGTTATC
CAAGAAGGAGACGATGGATCACTTCAAGCATCTATTGATGAAATCATCCA
CAAAGCTAaaagaaaaagGATTTTGGTGCGCAAGGGAAATGTCAGACTTG
GGATGATGAGACATTTATTTATCATTATGGATATGTCAAGGTCAATGAAA
GAGTCTGATCTTCTGCGTCCCAATAGATTGGCTTGTGTAACAAAGCTTTT
GGAATCGTTCATTATTGAATATTTTGACCAGAATCCAATATCACAGCTAG
GTATAATAACCACCAAAAACAAGAGGGCAGAAAAACTAACAGAGCTAAGT
GGCAACCCTCGTATGCATGTCGGCGCTTTACAGGCAGAAGCTTTGAAAGG
GCCTGATGATGGGGAGCCTTCATTACAAAACAGTCTGAAATTGGCATTAT
CATTGTTGCGGCACCTGCCAAGCCATGCCAGTAGAGAAGTTCTCCTAATT
TATGGAAGTTTAACAACTTGTGATCCTGAAGATATTCACCAAACTATAGC
AgagtTAAAGGAAAACAATATCCGCTGTTCAGTTCTTGGCCTGTCAGCAG
AAATCAAAGTTTGTAAAACTATAACACAAGAAACAAATGGATCATATCAC
GTCATACTAGATGAAAAACATTGTAAAGACTTGCTCCTAGAACACATTAG
GCCTCCAGAGGCAAAGgTCAATGTAGAGGCTTCATTGATACGAATGGGTT
TTCCAAAGCATTCATCCAATGAATATCCAGCACTTTGTTTATGtCACATC
GAACAAGAGCAAAATGATCTGAAAGATGTTGGCTATTTTTGTCCCCAGtG
TTTCAGCCAATATTGTGAACTTCCAGTAGAATGTAAAATTTGCGGCTTGA
CTCTTGTATCTGCACCACATTTGGCACGTTCTTATCAACATCTTTTTCCG
CTGCCTGCTTTTGAAGAAGTCAAGCAAAACGAAGAACAGCAAAATGATAA
TACAAGGACCTGTCAAGGAtgtcaaaatcttttaaaagatcCCATTATAT
ACAAATGCCAGGATTGTAGCAGTCTATTTTGCAACGATTGCGATCTTTTC
GTCCATGAAACTCTTCATACTTGCCCAGGGTGCAGTAGTCAGATTGGAAA
CATAGAAATGAATGGTATTGGCTGATTTCTATGGAAATCTTCGCCAAACA
ATGTTGTTGTATTTTATGTTTCAATTTAGACGTTGTTTTGTAAAATAGGA
GCTAGAGAAGACTTTCTTTATAATTTCTGTCCTATTTTCAAGCACCAATA
TACCTATTACATGAATATTAGGAGACGTGTAATTAACacgaatggaaaat
tttcgtccTAATAAAACCCTGTTAGTTTTTAAAGCAAAACACCTAAAGTT
TA
Run BLAST on NCBI

protein sequence of TCONS_00003407-protein

>TCONS_00003407-protein ID=TCONS_00003407-protein|Name=TCONS_00003407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
IVCFEVLKSNMAVPDEQSGFRWLSEYEKTWEVIQEGDDGSLQASIDEIIH
KAKRKRILVRKGNVRLGMMRHLFIIMDMSRSMKESDLLRPNRLACVTKLL
ESFIIEYFDQNPISQLGIITTKNKRAEKLTELSGNPRMHVGALQAEALKG
PDDGEPSLQNSLKLALSLLRHLPSHASREVLLIYGSLTTCDPEDIHQTIA
ELKENNIRCSVLGLSAEIKVCKTITQETNGSYHVILDEKHCKDLLLEHIR
PPEAKVNVEASLIRMGFPKHSSNEYPALCLCHIEQEQNDLKDVGYFCPQC
FSQYCELPVECKICGLTLVSAPHLARSYQHLFPLPAFEEVKQNEEQQNDN
TRTCQGCQNLLKDPIIYKCQDCSSLFCNDCDLFVHETLHTCPGCSSQIGN
IEMNGIG
Run BLAST on NCBI

transcript from alignment at sc0000028:65658..82844+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003407 ID=TCONS_00003407|Name=TCONS_00003407|organism=Clytia hemisphaerica|type=transcript|length=17187bp|location=Sequence derived from alignment at sc0000028:65658..82844+ (Clytia hemisphaerica)
TATAGTAtgttttgaagttttaaaaAGCAACATGGCTGTCCCAGATGAAC
AATCAGGCTTTAGATGGTTGAGTGAATATGAAAAGACCTGGTAAGATTTG
ATTTTAATACTTACTCTGTACTGTATCCTACTAAATCGTACATTCTTGAA
TGATCTCAATTTcttgttgttattattattattattattattataatgta
acaaagttctaggcgcacgtgggcctctggaactgatcgtgattatacaa
cgtattttacaattgtcttgtgttGAATCTTTTCGGGTGTTTACTCTATG
CAGTGTTGAGTCTTTNaccgaccgaccgaccgaccgaccgaccgaccgac
cgaccgaccgaccgaccgaccgaccgacctaccgactcactttttagacc
gaacgaggacgcgaaatgaatatatttgtgattgccgccttggtcaaaat
tctctctgtaattcgaaaaaatgcctTCCCTCGAAATTCGAACTggtcac
atccaaaatgttggatgtgttttacataacacgttttggtttattttgtt
tattttgcatagcTGTACAGTTCCGTACTTCCTGAATCNcgaccctcgac
atggcccgagaattctcgggccaaaacttttattggaattcgcgtaaagc
ccgagtatggcccgagctggcccgagaatttttttcaaaatttttgcgtt
gggcggcaatcacaaatatcttcgtttcgcgtcgcccgaccgactctcga
aaattgagcagaattgagtcggtgagtcggtaaatttgtcggactttttc
tgtcaatgacctttccttatagttcaaaaactttattattgccgattttt
ttAGAGCGATTTttagcgcattcgcagcattttgactttgtttatcatta
catgcacCATTTTGGGGTCgaaggtcacagtgttcaaaggtcataatttt
aaaccacccattacatGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TAATCTTTTGGGTTTCCTTTGAGTGTTAAAGAACAAAGCAAATGgcgaca
aaatctgaaaatttttctacaaaagttaTATTCATTAGGCGACCGATTAC
TAAATAATTTAATCGTTGTCAATTATTTCGTCCACCCcacttgtaatttc
tttgatttaagtacattaaaggccaatttaaaatttggacgaaataaaga
cgctgtactttttttcaaagtaatagaaaagggaggaaaaaattaaagtt
atagTGTTTATTTCCATGACACTGGAATCCTGAAATATAGCATGCTAAAA
TTCGTGTGATCCTGGAGTGTGTCTACAAAAATTAGACGGGTGTGTGTTGA
TTGTTCTTGTTATAATGTTATAGTAAATAAGTGCAGCTATGTAAAATAAA
CCACAAGGTGTTACTACATAAAAACTGtgtgcttttgtttagttttcgta
gATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACgtctta
gctaactcgaaagttttaatttggtaaaaaaatcgagttagctaaaaaat
caccaaaaaaatagtgacccactcaaaaactttgacccgtacgcaaaaaa
taatgacccacgcaaaaatatgacccacgcaaaaaataatgacccacgca
aaaaaatatgacccacacaaaaaatatgacccacgcaaaattttttaccc
acgcaaaaaaaattcacccacgcaaaaaaataatccaaaaaaatgaccca
cgtaaaaaatttgacccacgcaaaaaaaattgacccacgcaaaaaatatt
ttgacccacgcacccacgcaaaaatattaaccgacgcaaaaatattgacc
cacgcacccacgcaacccacgcaatttagcagactcaaacaaaacagaca
aatcttattttgtactattttgtttgactggacatatgctgaatcaattt
aacatttaacatggccaaaacatggcccgaatgactcggNCCAGCCAGGC
AGGCTTAAAAGCGTTATGAAAAAggaggcccgaacatggcccgaatgact
cgggtcatgttcgggccaaaagaattgatagggtctcttggcccaaacat
ggcccgaagaggcccgagaattctcgggccatgtcgagggtcgtgtcttt
ctttgaagactttgactGTCTTTGCTTCAGCGACATCTTTTGGCAATTTA
TTCCAGGTTGTtatagttcgataaaagaagGAATTCGTTTGTACACCACG
GAGTCCATCGCTTCCAAAGTTTGGAATCATCACAAAGTTGTGCCTCCTGT
TTGGTCGCGTTCGACGGGCTATCTTGTATGGGATGGTATCTTTTTCGTAA
TAGTTGATGTGCTTGTAAAGTTGGACCATGTCACAAAATTGTCTTCTAAA
CTCGAGCGTAGGAAGATCTAATTCACGCAATCGTTCTTCATAAGACATAT
TACGACATTTTTGAACAAGTTTTGTTGCCCGTCTTTGTACTCTTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCT
TTGAAGATTTtggtatcatcagcaaacagTAGGATCAATGAGATGGCCTT
TTCAGGAAGATCATTGATGTATAGCACGAACAGTATTGGTCCCAGTACAC
TACCCTGTGGAATACCACTCACTACAGGGTTTGTAGTCGAGAAGGACTGG
TTCACTTTTACTGATTGTGTTCGACCTGTTAGAaatggttggcaaacgat
atcatactccaggatgctTTGTCTCTTATTTTCTCCCTATTTTCTACTTT
CCTATcttctatcctgattttctgtctttctcaagtgtttctaactgttt
tctaagtatttttctgaaatttgcccgtaccggtgaaacaggtctctgac
cccggctcgaaccaccaaatgcaagcaaccttggtttacaaacccaatgc
ctaaccgcttACGCCAACGAGACACAACAGAAAGtcgtcattcacaaata
cttatagcgtgtaatttacagaccttaattaagaaagctcccaaccctac
cggtgcccctacaaggatccctatgGGATCTAAGTTAAGTCACAGGGTAa
gaatgcccctaagaaggccttcggccttatattgtgactctcgagctcca
accctaaccctaactgataataaccgaaacCCCGTCTATAGGTccgcgga
ttgaaaaatttcacttgcatcctggagtatgatatcgtttgccaaccgtt
AGAAATGACTTTATCCATTTTAAGATTGAACCGTTGATGCCATATGCTGA
TAGTTTTTTGCATAGTCGACGGTGGGGTACAGTGTCGAAAGCCTTAGCAA
AATCGAAGTAGATACTATCAACAACGTTTCCTTTCGAGATGCTCTCATAA
CATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTCGATAAAAG
ATTATGATCGGAAAGGTGCTTCATGATGTGTTTCCTCAGTATTGATTCCA
TTAATTTGCACACTACCGATGTCAAACTAACAGGTCAATAATTGACTGAT
AATTTTGTAGATAGGTGTGACATGTGCCACCTTCCAATCTCGTGGTAATG
AGCCTTCAACTAAAGATTTGTTCATGATTACAGCTAAGGGTAGAGACAGA
TAGTCAGATAATTCCGCTAGTATCATAGGGTGTATTTCGTCTGGACCGAA
TGACTTATTATGGTTGAGCTCTTTCAATTGATTCTGTACCATCTCCTCAG
AGATATGAACATCTCCGATGGATGAATCAGTTCTCTTTTCAAATGCAGGA
AGCTCACCTACTGCTTCTTTTGTGAATACACTGCAGAACTGTCGTTGAAG
TATATTGGCTTTTTCGTGATCTTCATGCTTTAACGATGTTTTGACATTTG
GTGAATCAAGTAGTGATGAAACTGTACTAGAAGATTTCATCTTGTTACGC
ACATGTGACCAGAAGATCTTCGGTTTGGTCTTTGCGTTATCACAAAGTCT
TTGTTCGTAGTTCCTGTGAGCTTGTCTCATCAATATGTTCACTCTGTTTC
TTACAGGGGTGTATTTTGCTCGATTGTGTTCTTTTTCTGTTGTAGCTGTA
GGTACACGAGAGTAGAGAGAAGCTGTGAGAACTTCAATGTTTAACCCCCA
TGAGGGCCCCCAGTGGTTTGCCTGAATGTCTAAACAGGCTTTTTCACtga
catgaaaaaaaaatttgtgtgaatgcatgaatagaccttttcgcctttcc
atccaccATATTgaattttatgcaaaaattatggtggccgaattgccgtg
gtcaaattcccttagaaagtatgcaaaacatattcaaaaagaaagtatta
atataaaacttacatgcataattagcattatattaaagtgtaatcttgta
gaagaaagattaaatttgcttctcttgaaaactaaaaataattatattcc
ctcatctcttagaacaagcacttcaaaaatccATAACATTTGACATAAAC
TCTAAActaaaactgaaaaatcaccagcgaaggtaaaaaataatccttat
ttggctgacggtaaattactctcctgggaatagagccgccaaatgatcaa
atcaaaacattgataatgtgtgacgtcataattactgcttttcagtttgt
gtgttttgaaagtttgatgtgtgtactccgtcttcgtagaatttcttaat
ggcattaaaacagaatatgctatgtctttaagaacaaatttctaaagggc
ttattgtttctttttgagttaagaaattccatcttttattgttctaatga
ttataatatttatttataagatgctttgtcagtctaaacttaaactccta
tatcaggattagaaactaggctagtcttacctcttttatttttcccttta
caacaatgcaatgctgacaagttgacacaacacaattgacaagtaatccc
tgactGAGAGAAGTTTGtattgaaatctgcaacaaaaacgaaagtggtct
cttctactggtTGCTTCTTGGCGCTCCTTCGCAGTTGTTTataaaatttc
caccaatgaggttgctgcATTTCAaatggcccttctttttggcacccgtg
gcctctcagtgccttgcacgacgcgcagctgtaaaatcccacccttcata
tatttttttcaatctgtgatcctaaggcttaggttttttctcatcttcaa
tttactgaagaaagcgggaatttgatgagAGAgatagattgtcaacaaag
tgccgtaaaaaatcattgaataaaagaagaactttaaatctttaatattt
tcattttgaagaattggtgcaaaaaagtgaaacatggaaaagtttcattt
tttatttgtttaattGAAATAGggaatttggaaaactttctatgtttgtt
tttttgcactattccctgtaactatgggcaagcacccggttgctaagatg
ttggcttgaaatcaaaagtgaaaccactgaaaacaaaagtaaaatcggcc
catgcttgaaattctgtaatcttgatatacaagtttaagtctatactgtt
tgttgtctttttaatctatgtgtaaacttgcatatgttttgcatactttc
caactaaatccaaccacggctttttcgttcctgtatttttgcatacaatt
caagatggcggatgaaaaggcgaaaaggtctattggaaaggtttgcgtga
acaaaaattgcgtgaattgcgaaaaaaactTTGCTTGAATGCTTGAATTT
GGGAAAATAATTTGTGTGATTGCTTGAATTACATGTCCGCTGCGGGAAGG
GGCCTCCATGAGGCTTGGAGATTTGGTTCAGAACTGTGAGCCGCACAGCG
CTAAACCATACAGTTAGGTACTCACATCTCCTTCAAGACACAATAAACTT
ATCAAAGAACTGATTTTGATTGAGCTTaaacttcaaaaatcttttaaaag
agaCATCTCAACTTGAAgaggaaaagctattaaaaataACCCAAAATACT
TTTACTCATATGCAAAACAATTTTCTaaagtcaaaaacaaaattggacCA
TTACTATCCTAATCAGCGATCTGGAAAAGATGACagacagttagtggaag
tactttgatttgtgaagcgtctttacgtcacatagaacaaaagaaaatag
caaaagaacaaaggaattacccatagccaccatttctcaaccatggggaa
tcacaattttacggaaatgggaatcttcatattattaaaaaaagattctt
ctgaaaatttcattcttccccatcagtatagacctaactcttgatacaaa
aattacgggaaacacatTTTTCGCTACCTTAAAggggaactaaacatttt
tttgaaaatacctaaATCAGATCACATACTTCCAAGGAATGacctctgaa
aatatttttcactaaaaacttcTCTATCAAAAGATATAGCTCTTTATATT
tacagaaaatctttttaaagcaATGCGTATTTTGTTAGGGGAATAGGTTG
AGCCATCTGTTTGACGTAAACACGTTCAGAAAGTAATTGGAAAAGCCCTT
ACTTTTAGTTGATAGAGAacctttaacttttttagtgTAGCCATAACTTT
TTATCCACAAATGGTTTAACCAAGAGACAGAATTCATTAAAAAGNTTAAa
caaattatacgttttttaaagaaggttttaTACAAAATAGGAAAGACATT
GAGagtggaaattatattttttcgaacTTATACTGTGTTGTGTAGTTCAT
GGAGACAAAAAAAGCATGAcctcaaaaaatgtttagttcccctttaattc
aaaaggggcctgagtccatttttatgaaatttgagatctttggtttttct
caatctctggCTCATTTGCTCTCTTTTGATGTACATAACAAGTAGTTTTC
AAAGTTAAAAAGGCTGAAAACTTCATACTGAAGCTCTGATAAAAGTCATG
TTTCATTCAaaagaggcctaagtccatcatctTTTTACAATAGAAGGGCC
TTAGTCCATCATCTTTTTACAATAAAGTCCACAAGAATAAGTTTGcatgg
ttaaaaaatattgaagtcttaaagcaggGCAGCACATAAGCAAACCCTAA
AAATGCCAACTAATACTTATATGTAACAGCTCAGAAGGTTATAGTtagca
ataagcaaaaagctcgtcccaGCTGTTGAAAAGACTACTTAAAGCACTAT
AGCTCTCACTCAACGAAATTgtggatttaaaaaattaaatattcagaATC
TATTAAAAAATTCGCTTTCAATGATATATACATAGTgtcccccccccttt
ttaaaaggggggaaatttttttttcagaaaataggaaaaggggggggggc
aaaatgGTTTTCAAAAATCTAGGGGGGTAATTAAAAGGGGGGGGGAAATG
GCCCCAAAAAGTCTAGGGGGGGAGAGAAAATCTGGGGACATTACTTTTTT
CTActgtggaaaaatattttttctactcTCTGTAGCTAACTTTGTCTAAA
CTAACTTTTCATTTCACTCtgtggaaacttttttttcaatttttcattgt
atATATAACAGAGATAACGTGAATAGAAGCATGAagagcaaaaattgaaa
aaaaaactttctagggggggggaaatttttttcaaatctcagGGGGGGAT
TTAAAAGGGGGGGAGAgggatttttttccattttctaggAGGGGGAACCA
ACCTACTAGGACACTATGTATAACATCATGGGGTTTTGTGAATGTGCTGG
AAAGATATTGGTTCTTGAAAGGTCAATAAATGGCccattttggcttaaaa
tttgataaaacaatgaaaatcacaaatatgaaaaatatattattcTCATC
GTATTTCAACATATTGCCATCAAAACAATTATTAGATATTTCCCAAGGCA
TGTATTTTCAAAGATCAAAAATCATATACTGAAAAATTAGCACTGTTTAA
AAAATATggacatttttggaaaaaaatgagaatgaaacatttttgaaaac
aaatctgtTAGTATTTTTCCCTTGGCTATTTCTAAGGTATGACTAAGTCT
AAAATTAGATTTTAGCAGCTAAATATTACCAGATGACTTGTTTGAACATG
TCATATAAACATCAAGTTGATTGATGAACAAGTTTTGGAGAAAAGCTAAT
TTTAAAACGCCAACCTGGATTTTCCGTCACGGTGCAACGCAAACTTTAAA
GTACACTAAAAAATTACCTTGCTGTTTTAGAGTGAATTCTTTTAGTGATC
TCAACAGTCCTATAAGTctaatattttaaacatttaaaaactgaaaaaat
tctgctttgttcaattttatttagaaattatgattttccATCACGGCGCA
ACGGAATTTTAGACCCCCAAAAAACTCTATTGGACATCTTAAATGACTTA
ATTTCTTCAGTAACttcaaaattatcaatatttaaaaacatttggttAGG
TAAACTACTTTGTAGCCTTTATATGcccattttgtaaaaatcttaatttt
tgtgAGCTTTCCAGGGATTTTAGCCCGGAAATCGGAAATCTGGTCATAAC
TTTTCAATGGAGCATGTTCCTGCTCTGATTTTTTCACATATTGTTCATGA
AAGGATATTCTTTATGTCtatacaaaaatttttgacattctgaaaacttc
attttttgccatttttcagattttttgggacgagctttttgcttattgct
agttacaaaaaatggtatttgcagccacaaaatgtacactctttcttaaa
ataacactgtattgtgtcacattgtgtttgttttgctttaggCTTTTCAA
ATATTCATGTATCCAAAACAAAACCCAACCTGGAATgtgtaaattgataa
attagtgaTTGAAGCATGATTGAGGCCacattttaagcccattgaaaacc
ctgcagccatagattaaacccataagtatctttatcagacgttaaactac
caatttcaagaaaaacagttaaaaaatattgaagttttaaAGCAGGGCAG
CACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNtttttggaaagctcatcaatttccttatttta
tggaattttgtactacacagcagccacaagaatgtcaacgctgtgggcta
aaaagtggttgtgattgaaaacctcactttttggggttctatttttgaat
gcaatcaGCGTGATAATAATAATAGCGTGATAATAATAGCGTGATAATAA
GCAGATgttcaataggtaaaagttggttattgagatttattaacccgagg
tgatgtaatattcaacaaggcgaagccgagttgaatatacatcactGAGG
GCTAATAAATCCAAaaaccaacgaaaacctattgaatatatgtcttatta
tatacctagaggcaaaaacaaaacatcaatTATGTTAATAGTCGAACGTT
TCACATAAAACACTCACATAATGGAACgttgaaatgtttttcttttttaa
tgattttcttaattactttgagtcataaaatttgctaatgaaattgacaa
tagatttaCTGTACTTTAATAAATTTATTTAATAACAACAAGagcgacaa
aaaaatcaaactttgaattcaaatttttaagaaaaaaatctaccgtggta
taatagccatggtatatcaggaattattcaatggctgtttttgcctacag
gtatataataataataataatagcgTAATGACTCCACAAAATAGCATGAT
CATTATCCATGTGCTTAACTTTTATCCTACGTTGTTTCATATAACTAAAC
TAAGCATCTATGCGCCCAGCTTAAAAGTACAcatacaaaatgaaaatgtc
aaaatagaGATGAGACATTTTCAGGTCATGTTCAGGCCAAAGTTCCAGat
gatgtcaatcgaacaacttctaacaaaaatcgcaatcaaacgggatcgaa
taattgcaattcaattgtcgaatgtaatcgaatctcaatcgaacggccga
ttcctgggaaatatttgattgtgtttgattgcgttTAGTCATTGTTGATT
ACATtcgattaatcttcgatttcgttcgattacaattatgttcaatgagt
ttgattgcgattaaattaaattggattaCTCTGTTTGAGCTTTGGACGGC
CGAGCGCTCAAGTACCGTACgaaagcaaataaaatctaTTATATTTTGGA
AGCAATAGACTCTTTTTGTCTAAACCCAATCCCTGCATTGATAATTGTTC
ATTATTTTCCAGGGAGGTTATCCAAGAAGGAGACGATGGATCACTTCAAG
CATCTATTGATGAAATCATCCACAAAGCTAaaagaaaaaggtatttttat
taTCCTTATGAAAATTGTATGTATGTGAAAAAATTtatagaatttctgtc
caactaaactctttcaggagatttgggtggcataGCAGCATATACATTTc
atccttattaggactcgtcagcactgcatactgcaccctgaCTTGGCGGG
ATCAAATTGCCTAGCATCTTACGCCATCTACTAACTGTGTATATATGAAA
AGATTTATTCCatgaaattatttcttttctctGAAACTTCTATTTTTGGT
AACATAGTTTTTAGTAttattcatttgaaaattctaGTCTGAACTTGGTT
TCTTTACTGTAGGCTCTTGTAGGCTGCTAATCAGAAAGTTCAATGAGTGG
TCGATAAGTCAAGCTATCATTTAGCGTCTAAAATTCAATATATTCAAAAT
CAAGAAACAGAAGAAAGCTTTTGAAGTTATACTTAGTAAGACTAGCTTTA
ACTATAAAGCCTAAGAGTTAATTTCCAACATAATAAAAAACAGTGCAATC
TGATTTCTAAGATATATTCTAAAATTCCAATTTTAGGATTTTGGTGCGCA
AGGGAAATGTCAGACTTGGGATGGTATGATCACTCTTTACTTTTATTCTA
CCATATGATTGCTTTTGACTAACTCTTGAGAGTCTTATAATCATTAAGct
caccaaaatttaagttgtatcatcatttttttaaatcaatgaaaaaCAAT
GCCTTTAGATAATACTAATTTTTCACATTATATATTGAAAACAGTAAGCT
CTGTGGTGTGAGAACTATGATAGATAATGAAAAAGGCATTTTAAAAGATC
ATCGCCTATATTCTCTTCAAAACCTAACAAATCTTCATAACttacaaatt
taattttgattccaGATGAGACATTTATTTATCATTATGGATATGTCAAG
GTCAATGAAAGAGTCTGATCTTCTGCGTCCCAATAGATTGGCTTGTGTAA
CAAAGGTAGCttagtaaaaaactttttttgatagGCCAATTTTCAGATAA
GATAGTGTAAGATATTTCAACCATATCAAAGAGTTTTTAAAATTACCAAT
TTCTGGAATATTTTTACCTTGTTCTAAGGACAGGTTTTGTCAAAGTAGAG
CCTAGTGTCCTTTGTTCTTTAAATTAAAGGttgttttattgattttaact
gttttaaaaacATTCTGTTTCAGCTTTTGGAATCGTTCATTATTGAATAT
TTTGACCAGAATCCAATATCACAGGTTatagttgttttttttgtagttgt
attttactGACTGAAGTACATTGATTGTAAAAATAACTGCGTTCTAGCAT
AGTTGCGATTGTCTCAAATAGTGTAAATAAGGTATATTTAATATAACAGA
AATTATCTATTTTCTATTATATAGAAAATGTttatgttttattgtttttc
attttttgctaGCTAGGTATAATAACCACCAAAAACAAGAGGGCAGAAAA
ACTAACAGAGCTAAGTGGTGAGTAATGTAAAACCTATTTTGTCATTGTTA
AACTTTGGGCTAAACTTTGCCTAAAGTCttgtaaaatctttaaaattaca
GATCAACCAAATTATGATAAGTCAATTTTCATTACAGGCAACCCTCGTAT
GCATGTCGGCGCTTTACAGGCAGAAGCTTTGAAAGGGCCTGATGATGGGG
AGCCTTCATTACAAAACAGTCTGAAATTGGCATTATCATTGTTGCGGTAT
AGACAATTTTAACgtatttgatttttaataattttgctATTACACATTCT
TTCTTGAGTGTTCTCATTACAAGATAgttcttttttttgtaaaaagaacT
AAGATTTATTTGGTTTGAAAGTAGAAGATCAGATGTGTCACAAACAATCT
TGTActtattcacaaaaataattttgatgttGCTGATGTTTTAGGCACCT
GCCAAGCCATGCCAGTAGAGAAGTTCTCCTAATTTATGGAAGTTTAACAA
CTTGTGATCCTGAAGATATTCACCAAACTATAGCAGTATGTCTTTTAAAC
ATTCATAATTCATTTCTCCTTTAACAACTATATTATTGCATCATCAATAG
GAGGAAGACTGTTGAATCCTATTTCAAGAAATAAATATTCAACAAtttta
gaatgttttttttttgtgcattagaAATTTCTCTACTTGAAAgattaaat
tcagctgaaaaaGTGTACGTTATGCAGTTAATGCTCCcaattaatttgaa
ttttttttcaggagtTAAAGGAAAACAATATCCGCTGTTCAGTTCTTGGC
CTGTCAGCAGAAATCAAAGTTTGTAAAACTATAACACAAGAAACAAATGG
TATTCTTTTATTAAATTTAGTGAAAGAAGTTTCTTCAAAAGAGGCAATTC
TCAAACAATCTGGGCTAACTGACATTGTTGATGAAACAAACAGACTATTT
CTTCCTAAGGATATCCTGCAAGTTTTTTCCAGCCATcgtattttgcatca
ttgtaaTTTATTTATCAGTCCTAAAGGAATGCATTTGATAGAAATCTTAA
CTCAATGACTTTCTGCCTGATGCATGTTATGCAATCCAAGTGAATGTATT
ATTTTATTTGTCAGGATCATATCACGTCATACTAGATGAAAAACATTGTA
AAGACTTGCTCCTAGAACACATTAGGCCTCCAGAGGCAAAGGTATCAATT
TTTAACCTTTTCAGGCTTTGTGTTGTACTTAAAAAAAACAGAGATTTCTT
TGGTaattatcattttatttttgcctctaggtatataataaagCATATAT
TCAATAGATTTACGTTGATTATGAATTTATTAACCCGgggtgatgtaata
ttcaacaaGGCGATGCTGAGTTGGATATAAATCACcaagggttaataaat
ctcaataaccaacttttacctattgaatatctgcttaatgtcGACCTGAA
ATCATAGGGACTGGATATGAACCTAACTTACTCTTATTTCAGCTTCTTTC
ACCATACTGTAGTAAAtttaatttctgttttcctGGAATTTCAAAGAACA
GAATGAATATTTCTGGACTATCCTTTGTGCTATGGTTTATTGAATTGTCA
GCTGGTTAAGTTTTCTTCTTTCACTCTCTGCTTTGTATAGCAACgattgt
tttatttgatttttaggTCAATGTAGAGGCTTCATTGATACGAATGGGTT
AGTTCAGATTAGTATATTTTCGCTAGGAAGTGTATGTTAATATTTTGTTC
ATATTATTGTCTTGGCTTTGAATGATTCAATGCAACCATTTTAAAAATCA
cacatttcaaaaacttttttcttggtGCGTGTCtctattgttctttttct
ttcctttttaagGTTTTCCAAAGCATTCATCCAATGAATATCCAGCACTT
TGTTTATGGTAATAACCTTTTTTTGGTTCATTATTATGAGTGCATTAGAC
AGCATGGTTTaagttggagtttttacaaggtcttttttctatttggttgg
ttgttaacctgttataaaatattattttttctttttctaaagaaagcaTT
ATCTCTAtctcttataaaaactccagctcaccCCAACAGCATAGGTATTT
TAACTGTTATTAGGTATTTTAACTGTTATTGATAGAAAGGAACAATTTCT
TTAAGTTGtttaattctttaatttttcttctgacAAATATGGCTCTCAGG
CGAATTTAATTTCTATAAAATGACCATTTTAatgactttcattttctttt
cagtCACATCGAACAAGAGCAAAATGATCTGAAAGATGTTGGCTATTTTT
GTCCCCAGGTAACATAGTTTCATCCCCCTATGTGTATGGGGGGTCTTTAA
ATTCTATGACATCCATGTAAGGGGGGTTTGAAAAAGTCTCTATTATTAGG
GGGGTTTGAAAAAGTCTCTATTATTAGGGGGGTTTGAAAAAGTCTCTATT
ATTAGGGGGGTTTTGGCCTTTAGGGGGGTTTGGCCTTTAGGGGGGTTTGG
CCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGCCTTTAGGGGGGTTT
GGCCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGCCTTTAGGGGGGT
TTGGCCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGCCTTTAGGGGG
GTTTGGCCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGCCTTTAGGG
GGGTTTGGCCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGCCTTTAG
GGGGGTTTGGCCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGCCTTT
AGGGGGGTTTGGCCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGCCT
TTAGGGGGGTTTGGCCTTAAGGGGGGGTTTGGCCTTAAGGGGGGTTTGGC
CTTTAGGGGGGTTTGGCCTTTAGGGGGTATGGTTATATAGGGggggttca
aaattttttaccaaataaatttatcattttcagtGTCATTCTCAGTCAGA
AATTTGATCCCAAGTCTCGATCTCAGTTATTAAGAGGGGGTCTGAGAAAT
TTATATATAGGGGGGTTGGCCTTTAGGGGGGGTTGATTATATAAGGGGGT
TTGAACCACCCAGGAAACTATGggtaaaaaaattgcaaataatGATGGTG
TATAGACATAGTCATCtttgtgatttcttttgtttcatcaccttatcaat
ttattttattttattcagtGTTTCAGCCAATATTGTGAACTTCCAGTAGA
ATGTAAAATTTGCGGTAAGCTGACTTGTCATGCTTTATTTTAACTCTTCA
ATTAATATCATTTAGCTTAGCTTCCTAACCCTTTGCTTACACAAcattta
taaacaaaagaaataactTTATTCCATCCCCCCGCCGCTGTGTgggttta
aaattttgataaattcatGTGCAAACAATTCTTGATTCAAACAAAACCCG
GAACCTGTGTATTTGTAATACTTTCAGGCTTGACTCTTGTATCTGCACCA
CATTTGGCACGTTCTTATCAACATCTTTTTCCGCTGCCTGCTTTTGAAGA
AGTCAAGCAAAACGAAGAACAGCAAAATGATAATACAAGGTAATCTATTT
cactcaatttttttctttgcagtcttaaaagtgaaaaactgAAAGCTAAA
ACCAATTAGTATCCAGAGATTTCAAAGAATAAATCTGAAGCTATAGGTGC
CTTCTCAGTAGCACCCAATACTGTTGTTCTTGATGCTTGATAATGCCTAG
GTTTGATCTTTAGTTTATCTAAACTTCTTTGCTGAGAATTTCATCCTCGT
CCCTGAAAGAtacttttccttttcatttccATTGTAAACtctgtcatcaa
aacaaaatttggatTCCTAATGGTTTTTCATTTCTCATGCTTATCAGATC
AGCAACAAAAAGTTCAAAAGGAAGTctcaaaatgaagtttttttcctctt
tctttttCAGGACCTGTCAAGGAtgtcaaaatcttttaaaagatcCCATT
GTAAGACTTGTACATTGAAGCTCATCTTTACTttcatttttcctcatttt
atctggtacattttattttgaatttgaattttaataaacttgttttttca
attcatttttttctttgcacAAAAAGTTAATTCTTAATATTGTATATATA
GTTCAAgtgtttcattttctaaaagttTTCCTACTACAGACATAAAATGT
GTAAAATTTCCTTCTTTCAATTTACTTACAGATATACAAATGCCAGGATT
GTAGCAGTCTATTTTGCAACGATTGCGATCTTTTCGTCCATGAAACTCTT
CATACTTGCCCAGGGTGCAGTAGTCAGATTGGAAACATAGAAATGAATGG
TATTGGCTGATTTCTATGGAAATCTTCGCCAAACAATGTTGTTGTATTTT
ATGTTTCAATTTAGACGTTGTTTTGTAAAATAGGAGCTAGAGAAGACTTT
CTTTATAATTTCTGTCCTATTTTCAAGCACCAATATACCTATTACATGAA
TATTAGGAGACGTGTAATTAACacgaatggaaaattttcgtccTAATAAA
ACCCTGTTAGTTTTTAAAGCAAAACACCTAAAGTTTA

Coding sequence (CDS) from alignment at sc0000028:65658..82844+

>TCONS_00003407 ID=TCONS_00003407|Name=TCONS_00003407|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000028:65658..82844+ (Clytia hemisphaerica)
ATAGTAtgttttgaagttttaaaaAGCAACATGGCTGTCCCAGATGAACA
ATCAGGCTTTAGATGGTTGAGTGAATATGAAAAGACCTGGGAGGTTATCC
AAGAAGGAGACGATGGATCACTTCAAGCATCTATTGATGAAATCATCCAC
AAAGCTAaaagaaaaagGATTTTGGTGCGCAAGGGAAATGTCAGACTTGG
GATGATGAGACATTTATTTATCATTATGGATATGTCAAGGTCAATGAAAG
AGTCTGATCTTCTGCGTCCCAATAGATTGGCTTGTGTAACAAAGCTTTTG
GAATCGTTCATTATTGAATATTTTGACCAGAATCCAATATCACAGCTAGG
TATAATAACCACCAAAAACAAGAGGGCAGAAAAACTAACAGAGCTAAGTG
GCAACCCTCGTATGCATGTCGGCGCTTTACAGGCAGAAGCTTTGAAAGGG
CCTGATGATGGGGAGCCTTCATTACAAAACAGTCTGAAATTGGCATTATC
ATTGTTGCGGCACCTGCCAAGCCATGCCAGTAGAGAAGTTCTCCTAATTT
ATGGAAGTTTAACAACTTGTGATCCTGAAGATATTCACCAAACTATAGCA
gagtTAAAGGAAAACAATATCCGCTGTTCAGTTCTTGGCCTGTCAGCAGA
AATCAAAGTTTGTAAAACTATAACACAAGAAACAAATGGATCATATCACG
TCATACTAGATGAAAAACATTGTAAAGACTTGCTCCTAGAACACATTAGG
CCTCCAGAGGCAAAGgTCAATGTAGAGGCTTCATTGATACGAATGGGTTT
TCCAAAGCATTCATCCAATGAATATCCAGCACTTTGTTTATGtCACATCG
AACAAGAGCAAAATGATCTGAAAGATGTTGGCTATTTTTGTCCCCAGtGT
TTCAGCCAATATTGTGAACTTCCAGTAGAATGTAAAATTTGCGGCTTGAC
TCTTGTATCTGCACCACATTTGGCACGTTCTTATCAACATCTTTTTCCGC
TGCCTGCTTTTGAAGAAGTCAAGCAAAACGAAGAACAGCAAAATGATAAT
ACAAGGACCTGTCAAGGAtgtcaaaatcttttaaaagatcCCATTATATA
CAAATGCCAGGATTGTAGCAGTCTATTTTGCAACGATTGCGATCTTTTCG
TCCATGAAACTCTTCATACTTGCCCAGGGTGCAGTAGTCAGATTGGAAAC
ATAGAAATGAATGGTATTGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001902XLOC_001902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003407-exon-sc0000028-1491911889:65658..65747TCONS_00003407-exon-sc0000028-1491911889:65658..65747Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:65658..65747TCONS_00003407-exon-sc0000028-1510915933:65658..65747Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:65658..65747TCONS_00003407-exon-sc0000028-1575043694:65658..65747Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:76720..76797TCONS_00003407-exon-sc0000028-1491911889:76720..76797Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:76720..76797TCONS_00003407-exon-sc0000028-1510915933:76720..76797Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:76720..76797TCONS_00003407-exon-sc0000028-1575043694:76720..76797Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:77344..77380TCONS_00003407-exon-sc0000028-1491911889:77344..77380Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:77344..77380TCONS_00003407-exon-sc0000028-1510915933:77344..77380Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:77344..77380TCONS_00003407-exon-sc0000028-1575043694:77344..77380Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:77673..77762TCONS_00003407-exon-sc0000028-1491911889:77673..77762Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:77673..77762TCONS_00003407-exon-sc0000028-1510915933:77673..77762Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:77673..77762TCONS_00003407-exon-sc0000028-1575043694:77673..77762Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:77981..78031TCONS_00003407-exon-sc0000028-1491911889:77981..78031Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:77981..78031TCONS_00003407-exon-sc0000028-1510915933:77981..78031Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:77981..78031TCONS_00003407-exon-sc0000028-1575043694:77981..78031Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:78220..78274TCONS_00003407-exon-sc0000028-1491911889:78220..78274Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:78220..78274TCONS_00003407-exon-sc0000028-1510915933:78220..78274Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:78220..78274TCONS_00003407-exon-sc0000028-1575043694:78220..78274Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:78395..78503TCONS_00003407-exon-sc0000028-1491911889:78395..78503Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:78395..78503TCONS_00003407-exon-sc0000028-1510915933:78395..78503Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:78395..78503TCONS_00003407-exon-sc0000028-1575043694:78395..78503Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:78702..78792TCONS_00003407-exon-sc0000028-1491911889:78702..78792Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:78702..78792TCONS_00003407-exon-sc0000028-1510915933:78702..78792Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:78702..78792TCONS_00003407-exon-sc0000028-1575043694:78702..78792Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:79019..79106TCONS_00003407-exon-sc0000028-1491911889:79019..79106Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:79019..79106TCONS_00003407-exon-sc0000028-1510915933:79019..79106Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:79019..79106TCONS_00003407-exon-sc0000028-1575043694:79019..79106Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:79372..79448TCONS_00003407-exon-sc0000028-1491911889:79372..79448Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:79372..79448TCONS_00003407-exon-sc0000028-1510915933:79372..79448Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:79372..79448TCONS_00003407-exon-sc0000028-1575043694:79372..79448Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:79924..79954TCONS_00003407-exon-sc0000028-1491911889:79924..79954Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:79924..79954TCONS_00003407-exon-sc0000028-1510915933:79924..79954Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:79924..79954TCONS_00003407-exon-sc0000028-1575043694:79924..79954Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:80120..80165TCONS_00003407-exon-sc0000028-1491911889:80120..80165Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:80120..80165TCONS_00003407-exon-sc0000028-1510915933:80120..80165Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:80120..80165TCONS_00003407-exon-sc0000028-1575043694:80120..80165Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:80511..80565TCONS_00003407-exon-sc0000028-1491911889:80511..80565Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:80511..80565TCONS_00003407-exon-sc0000028-1510915933:80511..80565Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:80511..80565TCONS_00003407-exon-sc0000028-1575043694:80511..80565Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:81476..81521TCONS_00003407-exon-sc0000028-1491911889:81476..81521Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:81476..81521TCONS_00003407-exon-sc0000028-1510915933:81476..81521Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:81476..81521TCONS_00003407-exon-sc0000028-1575043694:81476..81521Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:81735..81846TCONS_00003407-exon-sc0000028-1491911889:81735..81846Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:81735..81846TCONS_00003407-exon-sc0000028-1510915933:81735..81846Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:81735..81846TCONS_00003407-exon-sc0000028-1575043694:81735..81846Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:82218..82257TCONS_00003407-exon-sc0000028-1491911889:82218..82257Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:82218..82257TCONS_00003407-exon-sc0000028-1510915933:82218..82257Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:82218..82257TCONS_00003407-exon-sc0000028-1575043694:82218..82257Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1491911889:82489..82844TCONS_00003407-exon-sc0000028-1491911889:82489..82844Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1510915933:82489..82844TCONS_00003407-exon-sc0000028-1510915933:82489..82844Clytia hemisphaericaexon
TCONS_00003407-exon-sc0000028-1575043694:82489..82844TCONS_00003407-exon-sc0000028-1575043694:82489..82844Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003407-proteinTCONS_00003407-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:65658..82844 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.7616	27.9285	9.2372	8.25201	12.7015	9.99225	12.9261	15.0044	15.5937	13.681	14.7767	11.0766	16.6895	14.448	15.7113	20.0231	20.3623	20.1331	4.76262	8.51482	10.892	12.1547	38.3492	34.7021	15.6062	16.2427	24.9778	26.887	34.3275	37.5696
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR004595TFIIH_C1-like_dom
IPR013083Znf_RING/FYVE/PHD
IPR012170TFIIH_SSL1/p44
IPR007198Ssl1-like
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00003407 vs. Swiss-Prot (Human)
Match: T2H2L (General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H2C PE=1 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.873e-138
Identity = 218/385 (56.62%), Postives = 281/385 (72.99%), Query Frame = 2 
Query:   62 RWLSEYEKTWEVIQEGDDGSLQASIDEIIHKAKRKRILVRKGNVRLGMMRHLFIIMDMSRSMKESDLLRPNRLACVTKLLESFIIEYFDQNPISQLGIITTKNKRAEKLTELSGNPRMHVGALQAEALKGPDDGEPXXXXXXXXXXXXXXXXXXXXXXEVLLIYGSLTTCDPEDIHQTIAELKENNIRCSVLGLSAEIKVCKTITQETNGSYHVILDEKHCKDLLLEHIRPPEAKVNVEASLIRMGFPKHS------SNEYPALCLCHIE-QEQNDLKDVGYFCPQCFSQYCELPVECKICGLTLVSAPHLARSYQHLFPLPAFEEVKQNEEQQNDNTRTCQGCQNLLKDPIIYKCQDCSSLFCNDCDLFVHETLHTCPGCSSQI 1195
            RW   YE+TWE+++E + GSL+A+I++I+ KAKRKR+    G VRLGMMRHL++++D SR+M++ DL +PNRL C  KLLE F+ EYFDQNPISQ+GII TK+KRAEKLTELSGNPR H+ +L+ EA+     GEPSL NSL +A+  L+H+P H SREVL+I+ SLTTCDP +I+  I  LK   IR SV+GLSAE++VC  + +ET G+YHVILDE H K+LL  H+ PP A  + E SLIRMGFP+H+       +  P+  + H++   +  L   GYFCPQC ++YCELPVECKICGLTLVSAPHLARSY HLFPL AF+E+   E    +  R C GCQ  LKD  +Y C  C ++FC DCD+FVH++LH CPGC  +I
Sbjct:   10 RWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGSRTMEDQDL-KPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLK-EAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE---YNGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKI 389
The following BLAST results are available for this feature:
BLAST of TCONS_00003407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2H2L3.873e-13856.62General transcription factor IIH subunit 2-like pr... [more]
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