TCONS_00003439 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003439
Unique Name	TCONS_00003439
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3567

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000028:551635..556745+
coding sequence from alignment at sc0000028:551635..556745+

transcript sequence

>TCONS_00003439 ID=TCONS_00003439|Name=TCONS_00003439|organism=Clytia hemisphaerica|type=transcript|length=3567bp
CTTCAGCAACTTTGTACACCGACGCACTGACGTCATTTATAAATTACCCC
CTGGATTGTTTGTTAATTACTGTAGTGTTTTATAGATAATCACTGCTCTA
TTCAGGGGGTACATTGTGTAACTCAGACGAATGAGTATAAATGGAGGAAG
ATTATTCAGTTGAAGCAGAAAACAACAAGTGAAAACATTGAAGAAcacaa
atcaaaaaatcaattgaaaTACAGTAGAGAATAATATTAAGGCTGGAAAC
TTGCATCAAACAAACTGAAAAGAACCAACAATTGCGTTTTAATCTAAAAT
CACACAATGCCACCACAAGCAAATAGCGGAGCCGCTTTACCCACACCACC
ATCCACAACTAGCACTGGTGTGACAGTAGTTGACCAATATGGAGAAGAGG
AAGATGACTCATGCTGTAGAAACCTCACCAATACTATCAATGGTGCTCTT
GAAAACTTCTTTGCAGCAATCGGTCGAGGTGTCGCCAACAACCCTTGGAA
AGTGATCATTATCTCCTTAGTTCTCTCTCTACTCTGTATGGTCGGTGTAC
TAGAATTGCAATCGGAGAATCGTGGTGAAAAGAATTGGGTATCACAAACC
TCAGATCCTATCAAACACAAAGAATGGATTGATGATGTCTTCCCAATACC
ATCCAGAACCTCCAAACTTCTCTTGGAGAAGAAAGATGGATCTGATTTAT
TGACCAGAGATGGACTTCTCAAACTTTATGAAGAAGACCAGAAAGTGAAA
GGGATGTTGTTCAACAAAACAGGATACCAATGGACTGATATCTGCTATTC
GGCCGCTGGTAGTGCCTGTATCCCAACTTCCGTTCTCGAGTTATGGAGCT
ATGACCGCGCCATTATTTCCAATCTCACCAACGATCAAATCAAAGCGACT
ATCAATTCACAAGGTCTTGTAAGTCCTATGACTGGTCAGAATATCACCAT
TGAACGTCTTGTTGGTGGACCTGTCAAACGTGGACAAAATGGTGATATTG
AAGAAGCATCTGTGTTGAAAGTTGATTATCGGCTGAAgaaacaagatatt
tttgatgaAGGAAGCGGACGTGATGTCGATCAATACGCAGATGCATGGGA
AGAAGAACTTGAGAAAACCTTCGAAAATGGTGACGCAGATTACGTAATCT
TCACATACTCACTGTGGGCAAACGATAAAGCCTCCGAAGATGCTTCTAAT
GgagatttacaatttttcgtGGTCGGTTACATCCTTGTTATTATCTACTT
ATCTATCATGTTGGGATCCTTCTCTCGAATCGGCCACAAGATTTTATTGG
CGATCGCAGGTATTGGTGTCATCGGGATCTCAATCGGTATCGCTTACGGT
CTTGGATCGGCTTTCCAATTAAAATATACCGGTGTCCATAACGTGTTACC
GTTTCTACTACTCGGTATCGGTGTTGACGATTTGTTTGTGATCGTTCAAA
GTTGGGATAACATTGGAGGACCTATACGGGATCACCGTACCATTCCGGAG
AAGATTTCGTTGGCAATGCGACATGCTGGCGTATCTGTGTTGGTGACTTC
CGTTACTGATATTTGTGCTTTCGCTATCGGATCAGCAACAATCTTACCAG
CTTTacggtcattcagtgtatggtGTGCTATTGGCATCTTAGCTATCTTC
TTATTAACTATCACACTCTTCACCGCTTTGTTGACTTTGGATGCCAGACG
ACAAGAGAAAGAACGAGATGCCTGTTGTTGCTGCTTGAAACTCTCTTCGG
ATTATGAGCCACCAAGCTGTTCCGAAACCAAATATTTGAAAGGATTCTTG
AAGAATTATTACGCCCGCGTCATCCTATCAACACCTGGAAAAGTCATCGT
TCTTATAGCCGTTGCTGGTCTCTTGGGAGGTGGTTTCTATGGTATGACTG
AATTGGAGCAGAATTTCGACTTCGTCTGGTTTTTACCAACTGATTCACGA
CCAAGAATGTTCATTGAGAAAGACAGAATTGCTTTCCCTGGTAATGGCGT
CCCTGGAGACATTTACATTGGCCGTATCGATTATTGGAAAGATGGTCATG
TGCACATGGACAAAATCAAAACAGCATTAGAGAACGATAAATTCGTATCT
GAAGGCACCGTCAGCAGTTGGTTCCACCATTACAATGAATGGCTCCACCA
GAACCACCGAGACATGCTAGAAGATAACTGCGTCGCAATCAACAAGTGTA
AAACTAAGAATGATACTGTATTTTACCAACTTTTGGATGTCTTTTTGGCA
GGTGAAGGAAAACATTATAAAAGTTTAATCAAGATGGACGACAAAAGAAT
TAGAGCATCTAAAATCCAATACACGCATATCCAGTTAGTGGGATCAGTGC
AACAAGTTGATGCTATGGATTCCATCACCGGTACCATCAAACCTGGTCTC
ATCCCAGACGgtggagaagaaattcttccTTTCGCTTTTAACCAGAACTA
CATCAATTGGTCAACCAACAAAGTCATCAGTACTGAATTGGTCAGGAATA
TCGCGTTAGCCGGCGCTTGTGTTTTGGTAGTCACCTTGTTTCTCTTGTCA
AACTTGGTCGCTTCATTGCTGGTTGTAGCTTGTGTTGCATTCTCTTTGAT
TGAGATCGCAGCATTCATGGGATTCTGGGGCTTAACCATTGATACTGTGA
CTACCATTATCCTTGTCATCGCCATTGGATTGACGGTTGATTATTCAGTC
CACATTGCGCATGGATTCATGGCATCCAGAGCTGGTGATCGTAACCAACG
AATGACTGAAGCCTTATATGAAGTTGGCCCTGCTGTTTTCCATGGTGGAT
TTTCAACTTTCCTGGCTTTTGCACTTCTCTCTGCATCGCAATCTTACGTC
TTCTTAACATTCTTTAAAGTATTTTTCCTTGTGGTGATCTTTGGTATGTT
TCACGGTATGGTCTTTTTACCAGTCATGCTCAGTTTAATTGGTCCAGCAC
CGTACGCTGACCACAAAGCCAGTAAGGACAACGCCGGTTCTCAACCTACA
GATGTACAACGACAAATCTCACAGCCCAAAGGACGACCATCGGAGCGAGA
TCATGAGATGGTGATTGTCATCGAAAAAGGATCAGATAACACTGCCTACG
TCAAAGAATGAATGAGAATGGAAATTTGACTCGTGCAGGACGCGAGCTGT
CAAATATGGAAAACATCAAAAGGCTTTCAAGCCCGATTTCCAGGACTCTT
TAAGAGCTTTTAACTCATGTTGAACATGAGACGTTCAGTAACCAAAGAAT
TCATATTTTTTAGTTATCataatgtatatatttttaaagattttaatttt
atttttggaaattatttattaattttaattttccatTTCAACGCATTTTG
TAAAcacaaatatttatttttaggaaatcttTTCGAAATTATTTTCACTT
CTTCCATTCTTTTGTACAAagaattaaatttcaaattaaaatccATAAAC
ATACATCGAAACATTGTTGCATTTTATTAACTTCTCAATATACACACAGC
TTTATCTAATCAAAATCTGATTAATTTActtaatcttaaattttattcgT
TTTTATTTTAACACTAC

Run BLAST on NCBI

protein sequence of TCONS_00003439-protein

>TCONS_00003439-protein ID=TCONS_00003439-protein|Name=TCONS_00003439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=934bp
MPPQANSGAALPTPPSTTSTGVTVVDQYGEEEDDSCCRNLTNTINGALEN
FFAAIGRGVANNPWKVIIISLVLSLLCMVGVLELQSENRGEKNWVSQTSD
PIKHKEWIDDVFPIPSRTSKLLLEKKDGSDLLTRDGLLKLYEEDQKVKGM
LFNKTGYQWTDICYSAAGSACIPTSVLELWSYDRAIISNLTNDQIKATIN
SQGLVSPMTGQNITIERLVGGPVKRGQNGDIEEASVLKVDYRLKKQDIFD
EGSGRDVDQYADAWEEELEKTFENGDADYVIFTYSLWANDKASEDASNGD
LQFFVVGYILVIIYLSIMLGSFSRIGHKILLAIAGIGVIGISIGIAYGLG
SAFQLKYTGVHNVLPFLLLGIGVDDLFVIVQSWDNIGGPIRDHRTIPEKI
SLAMRHAGVSVLVTSVTDICAFAIGSATILPALRSFSVWCAIGILAIFLL
TITLFTALLTLDARRQEKERDACCCCLKLSSDYEPPSCSETKYLKGFLKN
YYARVILSTPGKVIVLIAVAGLLGGGFYGMTELEQNFDFVWFLPTDSRPR
MFIEKDRIAFPGNGVPGDIYIGRIDYWKDGHVHMDKIKTALENDKFVSEG
TVSSWFHHYNEWLHQNHRDMLEDNCVAINKCKTKNDTVFYQLLDVFLAGE
GKHYKSLIKMDDKRIRASKIQYTHIQLVGSVQQVDAMDSITGTIKPGLIP
DGGEEILPFAFNQNYINWSTNKVISTELVRNIALAGACVLVVTLFLLSNL
VASLLVVACVAFSLIEIAAFMGFWGLTIDTVTTIILVIAIGLTVDYSVHI
AHGFMASRAGDRNQRMTEALYEVGPAVFHGGFSTFLAFALLSASQSYVFL
TFFKVFFLVVIFGMFHGMVFLPVMLSLIGPAPYADHKASKDNAGSQPTDV
QRQISQPKGRPSERDHEMVIVIEKGSDNTAYVKE

Run BLAST on NCBI

transcript from alignment at sc0000028:551635..556745+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003439 ID=TCONS_00003439|Name=TCONS_00003439|organism=Clytia hemisphaerica|type=transcript|length=5111bp|location=Sequence derived from alignment at sc0000028:551635..556745+ (Clytia hemisphaerica)
CTTCAGCAACTTTGTACACCGACGCACTGACGTCATTTATAAATTACCCC
CTGGATTGTTTGTTAATTACTGTAGTGTTTTATAGATAATCACTGCTCTA
TTCAGGGGGTACATTGTGTAACTCAGACGAATGAGTATAAATGGAGGAAG
ATTATTCAGTTGAAGCAGAAAACAACAAGTGAAAACATTGAAGAAcacaa
atcaaaaaatcaattgaaaTACAGTAGAGAATAATATTAAGGCTGGAAAC
TTGCATCAAACAAACTGAAAAGAACCAACAATTGCGTTTTAATCTAAAAT
CACACAATGCCACCACAAGCAAATAGCGGAGCCGCTTTACCCACACCACC
ATCCACAACTAGCACTGGTGTGACAGTAGTTGACCAATATGGAGAAGAGG
AAGATGATTCTTGCTGTAGAAACCTCACCAATACTATCAANCACCACGGG
TGTGACAGTGGTTGACCAATATGGGGAAGAAGAACATGACTCATGCTGTA
GAAACCTCACCAATACTATCAATGGTGCTCTTGAAAACTTCTTTGCAGCG
TGAGTATTTTATTTGATTGCTCAGGTGATTTCAAATGATCTATAAGTTAT
TTTTTGAGTGAATAGTCTCtaccacagatttctgtaaagcccgaaggctG
GATATCATGCTTTAAGCTcctccaagcaaaaaaagtggaTATTGCAATAT
TAccgctattgttttcgaaactGTTCGAAAACCTGccaagcttcttattg
gtcaagtcGGCAATGTTTTCTTCGTCTAGAGTCGTCATCCATAAGTATTT
TAACACTTTTCTCTTCTTCTACGACAGAATCGGTCGAGGTGTCGCCAACA
ACCCTTGGAAAGTGATCATTATCTCCTTAGTTCTCTCTCTACTCTGTATG
GTCGGTGTACTAGAATTGCAATCGGAGAATCGTGGTGAAAAGAATTGGGT
ATCACAAACCTCAGATCCTATCAAACACAAAGAATGGATTGATGATGTCT
TCCCAATACCATCCAGAACCTCCAAACTTCTCTTGGAGAAGAAAGATGGA
TCTGATTTATTGACCAGAGATGGACTTCTCAAACTTTATGAAGAAGACCA
GAAAGTGAAAGGGATGTTGTTCAACAAAACAGGATACCAATGGACTGATA
TCTGCTATTCGTAAGTTCAAGATTATTTATCGTCCTATAtgcaaaaaaac
attaaaaaaggcTTTTGTCAAGCAAAATATCTCCAAACCTTTTACGTACA
ctgttcttccgtctcagacaaTTTTCCCATTTCAGTGAAATATATAAAGA
AGCTTTttcgtctcaaaattctgcatgaTTCACTAAAATTTCAAGGATGT
GAGCTAATTTTCTGTGTTAAATCCATTTCCCTTCTCAGACGAGAAACTTT
GCTTTGACAACATTGTACATAACATTTAATAATTGACTAATTCATcattc
tctttttttctaaactttcaGGGCCGCTGGTAGTGCCTGTATCCCAACTT
CCGTTCTCGAGTTATGGAGCTATGACCGCGCCATTATTTCCAATCTCACC
AACGATCAAATCAAAGCGACTATCAATTCACAAGGTCTTGTAAGTCCTAT
GACTGGTCAGAATATCACCATTGAACGTCTTGTTGGTGGACCTGTCAAAC
GTGGACAAAATGGTGATATTGAAGAAGCATCTGTGTTGAAAGTTGATTAT
CGGCTGAAgaaacaagatatttttgatgaAGGAAGCGGACGTGATGTAAG
TATCTTATTAAGTGAAGAGAATTTAGCAATCTTCGTAATCTTCATTATTA
ACAATAAACTCTTGAGACTGAATACAGttgtcagaaaaaaacacacaATT
GCTTTTTTACATCAATGCTTGAAGTTTTATTTTGTAACAATCACTAGCTG
TATAAAATGAAACTGAATAAGAATTTTTAatgtttccttaaaaatcttCC
TTCAAGCTGATTCATTTTCGAAAGTCCCTTtgtgtgaaaaataattttct
tattttctccttTAAACAGGTCGATCAATACGCAGATGCATGGGAAGAAG
AACTTGAGAAAACCTTCGAAAATGGTGACGCAGATTACGTAATCTTCACA
TACTCACTGTGGGCAAACGATAAAGCCTCCGAAGATGCTTCTAATGgaga
tttacaatttttcgtGGTCGGTTACATCCTTGTTATTATCTACTTATCTA
TCATGTTGGGATCCTTCTCTCGAATCGGCCACAAGATTTTATTGGCGATC
GCAGGTATTGGTGTCATCGGGATCTCAATCGGTATCGCTTACGGTCTTGG
ATCGGCTTTCCAATTAAAATATACCGGTGTCCATAACGTGTTACCGTTTC
TACTACTCGGTATCGGTGTTGACGATTTGTTTGTGATCGTTCAAAGTTGG
GATAACATTGGAGGACCTATACGGGATCACCGTACCATTCCGGAGAAGAT
TTCGTTGGCAATGCGACATGCTGGCGTATCTGTGTTGGTGACTTCCGTTA
CTGATATTTGTGCTTTCGCTATCGGATCAGCAACAGTGAGTAATTAATTC
AAAAATTCTTAATTCTCAAAGTCTCGTCCCGTGATAAAATTTATTCAGCG
TTGCTAACATCATCATGCTATATAACTGTTCTCCCTTGTGTAAACTTgtc
aaataaatccatttttatgttgaataaGTTCAAAAGCGTGCTTTGTTATA
CACCCTCATATAAACAAGAGATATGACAAGATATAACTGTACTAAATCTG
CTCTCTCTTTCTTTCTCTCTTCAGATCTTACCAGCTTTacggtcattcag
tgtatggtGTGCTATTGGCATCTTAGCTATCTTCTTATTAACTATCACAC
TCTTCACCGCTTTGTTGACTTTGGATGCCAGACGACAAGAGAAAGAACGA
GATGCCTGTTGTTGCTGCTTGAAACTCTCTTCGGATTATGAGCCACCAAG
CTGTTCCGAAACCAAATATTTGAAAGGATTCTTGAAGAATTATTACGCCC
GCGTCATCCTATCAACACCTGGAAAAGTCATCGTTCTTATAGCCGTTGCT
GGTCTCTTGGGAGGTGGTTTCTATGGTATGACTGAATTGGAGCAGAATTT
CGACTTCGTCTGGTTTTTACCAACTGATTCACGACCAAGAATGTTCATTG
AGAAAGACAGAATTGTAAGTATTGATTTAAATCCTTGCTTTATCGTTGGA
TATTCTAAAGTTTTCCTTCTAATGATTTTCACGAGGTTCAATGTGCTTTA
TCGACGGTNAATCGTTGGGTATTCTAAAGTTTTCCTTCTAATGATTTTCA
CGAGGTTCAATGTGCTTCATCGACGGTTTATTCCTTGAAATTAATGTTTT
CTTATTTCTTTCACAAGGCTTTCCCTGGTAATGGCGTCCCTGGAGACATT
TACATTGGCCGTATCGATTATTGGAAAGATGGTCATGTGCACATGGACAA
AATCAAAACAGCATTAGAGAACGATAAATTCGTATCTGAAGGCACCGTCA
GCAGTTGGTTCCACCATTACAATGAATGGCTCCACCAGAACCACCGAGAC
ATGCTAGAAGATAACTGCGTCGCAATCAACAAGTGTAAAACTAAGAATGA
TACTGTATTTTACCAACTTTTGGATGTCTTTTTGGCAGGTGAAGGAAAAC
ATTATAAAAGTTTAATCAAGATGGACGACAAAAGAATTAGAGTAAGTAGA
TTTGAATTCACTAATCCacatatctttttaaaaatagtgtgatatttaaa
attttcctttcccATAATTTTCATTTAAGAAAATCTTTCCCGATTTCTTT
ACATCATGTATTTCTTTATTTAACCAATAACTATCTTCTTTCTTCCAGGC
ATCTAAAATCCAATACACGCATATCCAGTTAGTGGGATCAGTGCAACAAG
TTGATGCTATGGATTCCATCACCGGTACCATCAAACCTGGTCTCATCCCA
GACGgtggagaagaaattcttccTTTCGCTTTTAACCAGAACTACATCAA
TTGGTCAACCAACAAAGTCATCAGTACTGAATTGGTCAGGAATATCGCGT
TAGCCGGCGCTTGTGTTTTGGTAGTCACCTTGTTTCTCTTGTCAAACTTG
GTCGCTTCATTGCTGGTTGTAGCTTGTGTTGCATTCTCTTTGATTGAGAT
CGCAGCATTCATGGGATTCTGGGGCTTAACCATTGATACTGTGACTACCA
TTATCCTTGTCATCGCCATTGGATTGACGGTTGATTATTCAGTCCACATT
GCGCATGGATTCATGGCATCCAGAGCTGGTGATCGTAACCAACGAATGAC
TGAAGCCTTATATGAAGTTGGCCCTGCTGTTTTCCATGGTGGATTTTCAA
CTTTCCTGGCTTTTGCACTTCTCTCTGCATCGCAATCTTACGTCTTCTTA
ACATTCTTTAAAGTATTTTTCCTTGTGGTGATCTTTGGTATGTTTCACGG
TATGGTCTTTTTACCAGTCATGCTCAGTTTAATTGGTCCAGCACCGTACG
CTGACCACAAAGCCAGTAAGGACAACGCCGGTTCTCAACCTACAGATGTA
CAACGACAAATCTCACAGCCCAAAGGACGACCATCGGAGCGAGATCATGA
GATGGTGATTGTCATCGAAAAAGGATCAGATAACACTGCCTACGTCAAAG
AATGAATGAGAATGGAAATTTGACTCGTGCAGGACGCGAGCTGTCAAATA
TGGAAAACATCAAAAGGCTTTCAAGCCCGATTTCCAGGACTCTTTAAGAG
CTTTTAACTCATGTTGAACATGAGACGTTCAGTAACCAAAGAATTCATAT
TTTTTAGTTATCataatgtatatatttttaaagattttaattttattttt
ggaaattatttattaattttaattttccatTTCAACGCATTTTGTAAAca
caaatatttatttttaggaaatcttTTCGAAATTATTTTCACTTCTTCCA
TTCTTTTGTACAAagaattaaatttcaaattaaaatccATAAACATACAT
CGAAACATTGTTGCATTTTATTAACTTCTCAATATACACACAGCTTTATC
TAATCAAAATCTGATTAATTTActtaatcttaaattttattcgTTTTTAT
TTTAACACTAC

Coding sequence (CDS) from alignment at sc0000028:551635..556745+

>TCONS_00003439 ID=TCONS_00003439|Name=TCONS_00003439|organism=Clytia hemisphaerica|type=CDS|length=2805bp|location=Sequence derived from alignment at sc0000028:551635..556745+ (Clytia hemisphaerica)
ATGCCACCACAAGCAAATAGCGGAGCCGCTTTACCCACACCACCATCCAC
AACTAGCACTGGTGTGACAGTAGTTGACCAATATGGAGAAGAGGAAGATG
ACTCATGCTGTAGAAACCTCACCAATACTATCAATGGTGCTCTTGAAAAC
TTCTTTGCAGCAATCGGTCGAGGTGTCGCCAACAACCCTTGGAAAGTGAT
CATTATCTCCTTAGTTCTCTCTCTACTCTGTATGGTCGGTGTACTAGAAT
TGCAATCGGAGAATCGTGGTGAAAAGAATTGGGTATCACAAACCTCAGAT
CCTATCAAACACAAAGAATGGATTGATGATGTCTTCCCAATACCATCCAG
AACCTCCAAACTTCTCTTGGAGAAGAAAGATGGATCTGATTTATTGACCA
GAGATGGACTTCTCAAACTTTATGAAGAAGACCAGAAAGTGAAAGGGATG
TTGTTCAACAAAACAGGATACCAATGGACTGATATCTGCTATTCGGCCGC
TGGTAGTGCCTGTATCCCAACTTCCGTTCTCGAGTTATGGAGCTATGACC
GCGCCATTATTTCCAATCTCACCAACGATCAAATCAAAGCGACTATCAAT
TCACAAGGTCTTGTAAGTCCTATGACTGGTCAGAATATCACCATTGAACG
TCTTGTTGGTGGACCTGTCAAACGTGGACAAAATGGTGATATTGAAGAAG
CATCTGTGTTGAAAGTTGATTATCGGCTGAAgaaacaagatatttttgat
gaAGGAAGCGGACGTGATGTCGATCAATACGCAGATGCATGGGAAGAAGA
ACTTGAGAAAACCTTCGAAAATGGTGACGCAGATTACGTAATCTTCACAT
ACTCACTGTGGGCAAACGATAAAGCCTCCGAAGATGCTTCTAATGgagat
ttacaatttttcgtGGTCGGTTACATCCTTGTTATTATCTACTTATCTAT
CATGTTGGGATCCTTCTCTCGAATCGGCCACAAGATTTTATTGGCGATCG
CAGGTATTGGTGTCATCGGGATCTCAATCGGTATCGCTTACGGTCTTGGA
TCGGCTTTCCAATTAAAATATACCGGTGTCCATAACGTGTTACCGTTTCT
ACTACTCGGTATCGGTGTTGACGATTTGTTTGTGATCGTTCAAAGTTGGG
ATAACATTGGAGGACCTATACGGGATCACCGTACCATTCCGGAGAAGATT
TCGTTGGCAATGCGACATGCTGGCGTATCTGTGTTGGTGACTTCCGTTAC
TGATATTTGTGCTTTCGCTATCGGATCAGCAACAATCTTACCAGCTTTac
ggtcattcagtgtatggtGTGCTATTGGCATCTTAGCTATCTTCTTATTA
ACTATCACACTCTTCACCGCTTTGTTGACTTTGGATGCCAGACGACAAGA
GAAAGAACGAGATGCCTGTTGTTGCTGCTTGAAACTCTCTTCGGATTATG
AGCCACCAAGCTGTTCCGAAACCAAATATTTGAAAGGATTCTTGAAGAAT
TATTACGCCCGCGTCATCCTATCAACACCTGGAAAAGTCATCGTTCTTAT
AGCCGTTGCTGGTCTCTTGGGAGGTGGTTTCTATGGTATGACTGAATTGG
AGCAGAATTTCGACTTCGTCTGGTTTTTACCAACTGATTCACGACCAAGA
ATGTTCATTGAGAAAGACAGAATTGCTTTCCCTGGTAATGGCGTCCCTGG
AGACATTTACATTGGCCGTATCGATTATTGGAAAGATGGTCATGTGCACA
TGGACAAAATCAAAACAGCATTAGAGAACGATAAATTCGTATCTGAAGGC
ACCGTCAGCAGTTGGTTCCACCATTACAATGAATGGCTCCACCAGAACCA
CCGAGACATGCTAGAAGATAACTGCGTCGCAATCAACAAGTGTAAAACTA
AGAATGATACTGTATTTTACCAACTTTTGGATGTCTTTTTGGCAGGTGAA
GGAAAACATTATAAAAGTTTAATCAAGATGGACGACAAAAGAATTAGAGC
ATCTAAAATCCAATACACGCATATCCAGTTAGTGGGATCAGTGCAACAAG
TTGATGCTATGGATTCCATCACCGGTACCATCAAACCTGGTCTCATCCCA
GACGgtggagaagaaattcttccTTTCGCTTTTAACCAGAACTACATCAA
TTGGTCAACCAACAAAGTCATCAGTACTGAATTGGTCAGGAATATCGCGT
TAGCCGGCGCTTGTGTTTTGGTAGTCACCTTGTTTCTCTTGTCAAACTTG
GTCGCTTCATTGCTGGTTGTAGCTTGTGTTGCATTCTCTTTGATTGAGAT
CGCAGCATTCATGGGATTCTGGGGCTTAACCATTGATACTGTGACTACCA
TTATCCTTGTCATCGCCATTGGATTGACGGTTGATTATTCAGTCCACATT
GCGCATGGATTCATGGCATCCAGAGCTGGTGATCGTAACCAACGAATGAC
TGAAGCCTTATATGAAGTTGGCCCTGCTGTTTTCCATGGTGGATTTTCAA
CTTTCCTGGCTTTTGCACTTCTCTCTGCATCGCAATCTTACGTCTTCTTA
ACATTCTTTAAAGTATTTTTCCTTGTGGTGATCTTTGGTATGTTTCACGG
TATGGTCTTTTTACCAGTCATGCTCAGTTTAATTGGTCCAGCACCGTACG
CTGACCACAAAGCCAGTAAGGACAACGCCGGTTCTCAACCTACAGATGTA
CAACGACAAATCTCACAGCCCAAAGGACGACCATCGGAGCGAGATCATGA
GATGGTGATTGTCATCGAAAAAGGATCAGATAACACTGCCTACGTCAAAG
AATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001917	XLOC_001917	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003439-protein	TCONS_00003439-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000028	supercontig	sc0000028:551635..556745 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.341938	0.317205	0.275135	0.208715	11.7198	8.56516	7.1967	12.255	24.1746	343.294	93.378	205.434	302.957	125.246	110.719	164.033	21.4621	84.8742	129.167	200.085	7.83535	10.3233	0.419362	0.473687	1.50579	1.22054	425.314	329.324	5.97485	3.56009

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp
IPR000731	SSD

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Blast

[Close]

BLAST of TCONS_00003439 vs. Swiss-Prot (Human)
Match: NPCL1 (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.871e-16
Identity = 136/509 (26.72%), Postives = 228/509 (44.79%), Query Frame = 1

Query:  562 SENRGEKNWVSQTSDPIKHKEWIDDVFPIPSRTS----KLLLEKKDGSDLLTRDGLLKLYEEDQKVKGMLF----NKTGYQWTDICYSAAGSA------CIPTSVLELWSYDRAIISNLTNDQIKATINSQ---------GLVSPMTGQNITIERL-----VGGPVKR-----GQNG-DIEEASVLKVDYRLKKQDIFDEGSGRDVDQYADAWEE---ELEKTFENGDADYVIFTYSLWANDKASEDASNG----DLQFFVVGYILVIIYLSIMLGSFSRIGHKXXXXXXXXXXXXXXXXXXXXLGSAFQLKYTGVHN------VLPFLLLGIGVDDLFVIVQSWDNIGGPIRDHRTIPEKISLAMRHAGVSVLVTSVTDICAFAIGSATILPALRSFSVWCXXXXXXXXXXXXXXXXXXXXXXXRRQEKERDACCCCLKLSSDYEPPSCSETKYLKGFLKNYYARVILSTPGKXXXXXXXXXXXXXXFYGMTELEQNFDFVWFLPTDS 1947
            S+ R EK +  Q   P      +  +   P+R+S     LLL  K+ S +L  D LL+L E  ++++ +       +      DICY+           C   S+L+ +  +R ++  LT +Q      SQ            +P+T ++ T   L      G PV       G  G D  EA  L + + L     +  G  R     A  WEE   E  + F+   A     T+     +++ ED  N     DL  F   YI++ +Y+S+ LGS+S     ++ + A +G+ G+++ +   + +     Y G+ +      V+PFL+L +G D++F+ V  +  +  P R        I  A+     S+L+ S+++   F +G+ T +PA+R+F++   + ++  FLL ++ F ALL+LD++RQE  R   CCC+K   +  PP   E   L GF +  YA  +L    + +VL+    L G   Y M  +    D    LP DS
Sbjct:  388 SQARSEKAFHDQHFGPFFRTNQV--ILTAPNRSSYRYDSLLLGPKNFSGILDLDLLLELLELQERLRHLQVWSPEAQRNISLQDICYAPLNPDNTSLYDCCINSLLQYFQNNRTLLL-LTANQTLMGQTSQVDWKDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMTFSLNN---YPAGDPRLAQ--AKLWEEAFLEEMRAFQRRMAGMFQVTF---MAERSLEDEINRTTAEDLPIFATSYIVIFLYISLALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEYQRL--PRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVK-PQELPPPGQGE-GLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDS 881

The following BLAST results are available for this feature:

BLAST of TCONS_00003439 vs. Swiss-Prot (Human)

BLAST of TCONS_00003439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPCL1	5.871e-16	26.72	Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=...	[more]

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TCONS_00003439 (transcript) - C. hemisphaerica