TCONS_00003500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003500
Unique NameTCONS_00003500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003500 ID=TCONS_00003500|Name=TCONS_00003500|organism=Clytia hemisphaerica|type=transcript|length=1686bp
gatacacggggacgattTGGATAAGTTATCTAAACACATAACCTTTTCCT
TGTCAAGTTTCCTTTACTTTTTACTTATTTCTttcagggaaaaaataaat
tatattcaattacaaaaaataaaaagaatgtcCGATTCGCCGGTGGATTC
TGGGAACGAAATTGAAGAGGAAGAAAAGCTTTCGGATGGAGAACCTGATG
AAAAGAGAGTCGCACACATCAAGGAGGACGACACAGACGTTGatttgaca
catgcgcgattgGATGAAGTTCCGTCGTTAAGCCATGTCAAAAATTTAGA
GaCATTATGTCTTCGGCAAAACCGAATCAAGAAGATTGAAAATTTGGGCA
ACCTGTCATCATTGGTTGACGTTAGTTTCTATGACAACCTGTTGACCACT
ATTGAAGGACTTGATGATGTGGTCAATCTCACTTTTTTGGACGTATCATA
TAACAAGACGAAGCGTATACAAAACGTTGAACACTTGACTAACTTAAAGA
AGCTGTTCCTCATAAAGAATCGAATCTCCAGGATGGAGAACCTCTCCACC
CTCATCAACATCACCATGCTTGAACTCGGTTCAAATCGCATTCGTAGGAT
TGAGGGTATTGAAACATTGGTCAACCTTGAAGAATTATTTTTGGGACAGA
ACAAAATCACCAAACTGGAAAATTTAGATTCATTGCAAAGTTTAAAACTG
CTGAGTATtcagAGCAATCGAATCATCAAGATTGAAGGTTTGGGAAATCT
ACACAATCTAGAAGACCTTTATTTGAGTCACAATGGAatcaaaaagattg
aaaatttggaaaataataaaaaattatcGACTTTTGACGTTGGTTCCAAT
CTGATTGAAGAGATCGAAAATATTGAACATTTAGAAGAATTGTCAGAATT
TTGGTGTAACGATAACAAAGTTAGTAATTGGAACGGCATTGAAAAACTGC
GTCCCTTGAAGAAATTAGAAACAGTTTACTTGGAACGAAATCCGTTGGAA
CTTCAAGATCGATCAGGATACCGGCGGAAGATTTTACTCGCATTACCACA
AATCACACAATTAGATGCTACCATGACCAGATAACGTCTAGAAAACTTTG
AATGAATTTAGCTAAACTGTTAACTAGCTCTCACTCTCCCTTGAGAGAGT
TTGAACCATTTGCGGAAGAAACATCTAATTACTTAACATAATCATGACAT
AATGTAGCCTGGCCTTCAAAAAAGATCTCAAATATTCTTTTAGGACTAGC
TCCTGGTATTTGGCAttattattaaaatctagaGGAACAACTGTTTCAGT
GACGCGCTCTATAGACTTTTAGTACGTGGTATCATAAGCGAATTTCTTAC
CACGAGAAAAATTTTCCTGCAATTTTATAGCATTCATTTGAGTCGGGATA
ATTTTGGAagttcaaacttgaaaaaaaaaatactcagAATCTGTAGGGAT
TTCCTGTCTTGTGTGAGTgttgaaaacaattgaaaacgTATGAGATTGGG
CAAATGTTTTGTAGGGTGATGAAAAAGTTGGGGTACATTCGATCTTCCCC
TGAAAATATGGATCACttcacaaaactttttttccccGATGAGGTATTTT
AGGGTCATTTATTCATATTTTGCACTTTGTACATATTGTTATATAAGAAT
ATGTTCGTTTCACTTTAAAATACATTTTCGTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00003500-protein

>TCONS_00003500-protein ID=TCONS_00003500-protein|Name=TCONS_00003500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
IHGDDLDKLSKHITFSLSSFLYFLLISFREKINYIQLQKIKRMSDSPVDS
GNEIEEEEKLSDGEPDEKRVAHIKEDDTDVDLTHARLDEVPSLSHVKNLE
TLCLRQNRIKKIENLGNLSSLVDVSFYDNLLTTIEGLDDVVNLTFLDVSY
NKTKRIQNVEHLTNLKKLFLIKNRISRMENLSTLINITMLELGSNRIRRI
EGIETLVNLEELFLGQNKITKLENLDSLQSLKLLSIQSNRIIKIEGLGNL
HNLEDLYLSHNGIKKIENLENNKKLSTFDVGSNLIEEIENIEHLEELSEF
WCNDNKVSNWNGIEKLRPLKKLETVYLERNPLELQDRSGYRRKILLALPQ
ITQLDATMTR
Run BLAST on NCBI

transcript from alignment at sc0000028:695491..705224-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003500 ID=TCONS_00003500|Name=TCONS_00003500|organism=Clytia hemisphaerica|type=transcript|length=9734bp|location=Sequence derived from alignment at sc0000028:695491..705224- (Clytia hemisphaerica)
GATACACGGGGACGATTTGGATAAGTTATCTAAACACATAACCTTTTCCT
TGTCAAGTTTCCTTTACTTTTTACTTATTTCTTTCAGGGAAAAAATAAAT
TATATTCAATTACAAAAAATAAAAAGAATGTCCGATTCGCCGGTGGATTC
TGGGAACGAAATTGAAGAGGAAGAAAAGCTTTCGGATGGAGGTACCTTTA
CATTCATAATAGTTAGTTTTGATGCCTCGTAGATGCATGAAACTTTTTAC
CTGCGAGGTAGACGATATTATCGTCCGTTACAGTGATAGTACAGGAATTA
TTATACAGCCGTTATGTCGGTGGACGGAAAAAAAATCGGTGATAAAATTT
CGAAGAAACGGACGATACCAATTTGGCATAAAACGGTTTTGCGGTTTTAC
TTGGACTAGGCAGTGAGACTTAGTTCCGTGGTGAAAGCCGCCAGATTGCA
TGTTCGATAGTCCACATCGCCTTATGAAGCTCTTATAATGTTTTTTTTTT
CTTAAGTTTTTGGTTCCTACAGTATTAAGCTCTTTTGATATTTAATTGCA
AAACCTGTACGATACTTTGTCTCTTTTCTATCCCTGGGATATGTTCTGCG
TATCTTAAATTACTTTAGACGTACAAACATTCGGGAGCATAAACTTACGG
GAATTTATTTTACACATTATTTCTGGCATAGTTGACCGCCAAGCTCATTT
TTTTCGGGTACATCTGGTATTTTGACTTGACGTAAAAATTCCATGTTCTA
TCTCTTTCTTTAACAGAACCTGATGAAAAGAGAGTCGCACACATCAAGGA
GGACGACACAGTATGATATTTACTTACGTTTTCAAGGCGGATTTTCACTC
GTTTTTCACAAACGCTTTCCTCGAAATTGCCAACAAAAATCAAAAAGAAA
GTTTATACCTAAACTAGCTTTTCATGTGCCATTGGAAAAAAATACTTAAC
CATTGATACTTCTCTGAACTTTCTCTGGACCTAATTGCCGCAGTTTAGTA
CACGTTTTTAATGTATCAAACTCTATAATAACTAGCAACCTGATTATTTG
AAATGAGATGGTCATCGAAATGCTATTGATAAAATTAATTAATTATTTGC
TAAATTAACCCCTAACTTGGCAAAACACTCGTTTTAGGCAAAACGAAACT
CAAAACGCCTTTCGCCAGAATTAATTAAATATATTCTTTGATTTACCGAC
TAATTTTGAATCTTTTCAGGACGTTGATTTGACACATGCGCGATTGGATG
AAGTTCCGTCGTTAAGCCATGTCAAAAATTTAGAGGTGAGCTTTCAAATT
GTGTGATACTAACCAAGGGACAAATGTTTCCCCTCCACTTGGCTACTTCG
TATTCTCAAGCCTTATATAAAAATATACTCCTCTTTTGTAAGAAGCGGAA
TTTTTTTCCATAAAGCTCTTGTTCGTAAATCTTTGGCACTTTGAGTACTT
CTTTATCCTATTCTTATGGCAATATTGAGATATTAAAGGTCATTTACCCC
ATTTTCACTACTTTAACCCCAATCTGCCTAAAATTCAGCAATTTCAGGCT
CAGTATTTTTGGACCTACCTGGAGGTCTTATAAATTAATCGTTGTCCATT
CGTCTGTCCGTCCGTTCGTCTGTTACAAGCTTTTCTCAATAATTTCATTA
GTTCATCATTAGTTTTTTCTGATTTTTGGCACAAAGATAAAAATTGGTGA
TGTCCAAAATGGGCTTTTCCAGAAAAAAAACCGTGCACCCCCTGTTGAGG
AGGTCCAACCTTTTGTGACCTGCCCCCTTGGAATTCCAGGCAATTTTAGG
ATCAAACCCCTCTGGAATTCCGAACTTTTAAAAATTTTCAATCATTACCC
CCTTGGAATTACGCTTATTTTTGACGGATTTTCGTCTACCCTTATGGAAT
TCCACTGCATTTCAAACCTTACCCCCTTGGAACGGAAATGGACCTCCTCA
ACAGGGGGTGCACGATATTTTTCTGGAAAAGCCCAATGTGGCGGAGCCCG
ATTTTCGAAAAAAATTCATTTCCGGCCGAAAATGCCGGAAAGGAAATATG
CCGGAAAAACCGGTTTTTTGGAATTTTCTCGAGATTTCATCATTAGTTTC
TTCTGATATTTTACACAAAAAAGCAATGCCCAAAACATGGCCGAGTCTGA
TTTTTGAGAAAATTATTTCCCGACCGAAATATGCCGGAAATCGACGTTTC
AGCAGATTTTCATTGGTCTTAATGGTGATATTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACATCG
ATTGTTTTCTGAAACAATGGAAATACAATACTTCGCTCTCCACCGTTTCA
TTCGATGTTTATCCAGAGTCTCTATAATAAATCCATGGTTTTAGTAATAC
TTGCGATGATTCTTTTTCTTTTGATAGACATTATGTCTTCGGCAAAACCG
AATCAAGAAGATTGAAAATTTGGGCAACCTGTCATCATTGGTTGACGTTA
GTTTCTATGACAACCTGTTGACCACTATTGAAGGACTTGATGATGTGGTC
AATCTCACGTAAGGGTATTTTCATTTTCCTAAAGAATTTTCCAATAGTAA
TTTTCCAGGAATGAGCTCGAAATACAGCGCATCGCGTCGCGTATATCATA
ATTATTTTAACCCAAATTTGTACGAGTCTCAATCCCTTACTTCATTTCGA
AATGATTGAAAAACCTTCAAAGTTTTTTCCTTTTCATTTGATATGTAAGT
TTTTTTACGTGCAAGAGCAACTAATGTAAGGGAGGATGGGATTGGAAGTC
GTACAAACGGGTAAATTTGTGCAAATATGTTACCATTTTTAGATTCACAG
CGGTACCCTATTGGAACGAAATGAGTCTCCTTGACAAAAAAAACAATGAA
ATACTTCAATATTAGACACTCGAAAATTCGCCAATTTCAGGGTTGATATA
GTCTAATCCAAACTATAGTTGCAAATCACAGACAAGGAGAAACCCTGTAA
CACTACTTCCTCTTTAAAACATCCATAATTATGCTCTTTCTAGCGCAGTA
TATCTTATACACAGACAGATGCTTTCTTTTCTCTGCAGTTTTTTGGACGT
ATCATATAACAAGACGAAGCGTATACAAAACGTTGAACACTTGACTAACT
TAAAGAAGCTGTTCCTCATAAAGAATCGAATCTCCAGGATGGAGAACCTC
TCCACCCTCATCAACATCACCATGCTTGAACTCGGTTCAAATCGCATTCG
TGTAAGAATTTCCTTGACCTTTTTCTATCTTCCTTCGTTTCGGGCGTAAA
CTCCTACTCGTCTAGTATGGCCTACACGCCTGGAGCCGTCTATTGTGTAG
ACCAAGTCAAGGCCATTGTTAGCCTAGTTAACTAAGCCCGTACTCGCAAG
GCTAGGACACATGGCTAATGGCAATATAGCGTTTTCGGCGCTTTAAAGAT
TTTTTGTATTTACAGATTTTAAGTTTGCCTTGGAATGCTGTTATTCAGTC
ACAACTTACCATCAAATTTATCCTAGTGACTGAATGAAACTAGTTTAGAT
TTCTACTCAAGGCCATTGTAAGCTTTGTTTTCTTCAAATTTACAGAAGAA
AATGTTGAAATTTAACAGAACGACTCGTTGGGTTTGTTGGTTCATTTTTC
TACTTCGGTGAAAATATGTATCGTATCGGAAACCTGTTTTATTACTAAAA
TGCCCACTAAAGTTGTCAGAAAGCAAGAAAAAAACAGCTGTCACACGTGT
TTATTGTTGATGTTTTTGTTTTTGTTTTGCAGAGGATTGAGGGTATTGAA
ACATTGGTCAACCTTGAAGAATTATTTTTGGGACAGAACAAAATCACCAA
ACTGGAAAATTTAGATTCATTGCAAAGTTTAAAACTGCTGAGTATTCAGG
TAAAAAAAAATTTTTTTTCAATCTATAACTCTGTATTACTTTTAGTTGAG
TCTCCAAAGCACGAACACGCATGCACGGGGAACACAAATTTATTCGAATT
TTGGAAATTTCGACTTATGGAGCCTTATAAGGCATTGCGGAATTGTTATC
TGAAGGGACGAGTAAACTTTTTCGAGTTAAGAAGATATTCGAGTGATAGT
GGTTCGAGTAAAAGAAAATCCACTACAGTGGAACCTCTAATTAGCGGACA
ACATCGGAGAAAGGGGTTAGTTAATAGGTTAGCTAATTAGAAGTGTCCGC
CTTTTAGAAACTTTTGATCTCGGAGCTCCAATTTTGAAATTAGGCCATCC
CAGGGTGTCGAAAATACAAAATTGTGGTCTAAAGTACTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCCCCCGCTAATTAATTTTTCGAAAATTTTCC
ACCCAGGACATTCTTATTCCAACCCCCCCCCGGTTATCAATTTTTGGGGA
AATGTTTTTGAAAGTTCCCTCTTTTGTTCTAATTCTGCTGTATTAGCCTC
ATTTTCAAAATATTTCCACCCAGGACATTTTTATTCCAACCCCCCCGCTC
ATTAAGTTTTGAGATTTTTTCCAACCCCCCGCTTATTCCAACCCCCCCCC
CGGCTATTAGGTACCCGAGACTAATAAGTGCTTGAAATAAAAATATCTAA
AAATTTTTTTTCGAATTTGGACGTCTGTGACCCGTTTGATATTCAATGTC
TGCTAATTGGAGAGCTAAAATAGGGGTTTTGGCCATTTCGTGCGAAAAAA
ATTGTCCGCTTATCAGAGGGTCCGCTAATTGAGTGTCCGCCTTTTAGAAA
CTTTTTTATGAGGATTTGACTAGGAAACGGCCGGGGAAAATGAAATTGTC
CGCTAATCAGAGGTGTCCGCCTTTTAGAAACTTTTTTATGAGGATTTGAC
TAGGAAACGGCCGGGGAAAATGAAATTGTCCGCTAATCAGAGGTGTCCGC
CTTTTAGAGTGTTCGTTAATTAGAGGTTTTACTGTATATCGTTTTAAATT
CTTACCATCGTCATCAATGTCTTACAAAGTCTGTATAATTTCTTATTACC
TCCATAGTTTGTATCACCACATTTGTTTTGCATTCTAGAGCAATCGAATC
ATCAAGATTGAAGGTTTGGGAAATCTACACAATCTAGAAGACCTTTATTT
GAGTCACAATGGAATCAAAAAGATTGAAAATTTGGAAAATAATGTAAGGA
TTTCATAACAACACCTGAAGCTTGAAGGGATACCTCTGAACGCCCCTTTT
TTAAACGCCCCTTCAAATAAATAACTTTACTTAAGGGAAAAGAATGTTCA
ATTAACGTCTTGATAAACTCCCCTTTCTCCCCTTCCTCTCCTTTCCTCCC
CGGGTTTATTTCGAGCAAGCAGTTCGCATATGACGAATGTGACGATCTGA
CCTGGTCGTTCAGACAGAACATTCTAAACTGCGTCGCATTCTGCTTGAAA
ACAAAAAATGAATGCAAAAGCAAAAGCGAAAGCGAAGGCGAAAGTGACTG
GGTTCTAATGTTTATGTTTATGATCGAAGTTTGTTTTTTGTGTGATTATT
TTGCTTTAGTCAATCACCGCGCTCCAAAACCCAAAACCCAAAACCCATTT
AATATTCATCCAAAATATCAAAGCGGTCTGCCAACTCTAGCAGATTCTTT
TACGGAGCAATGACCTTTAAAGTGTACTCTCCTGTACCTAATAAGCCCCC
CCGCTGCCCTGCTTTAAAAAATTTTTCCACCCAGAACATTCTTATTACAC
CCCCCCCCCCCTCATTAGTTTTTGGAAAATGTTTATGAAAGTCTCCTCTT
TTGCCCTAATTCTTTTGTATTAGCCTGCTTTAAAAATTTTTTCCACCCAT
GACATTTTTATTCCAACCTCCCTCCTGCTTATTTAAAGTTTTAAAAATCT
TTCACCAACCCCGCTTATTCCAAGCCCCCCCCCCGCTTATTAGGTACCCG
AGAGTATGTGCCAGCACGTCATCAGTCATCAGAATCTACATTGAGATTAT
AAACGCTCCTGCTAAAACAAAAAAAACTTTATTCGAAGTAGTCGGTTTAA
AAAGTTTACAACCTTCTTCTTTTGGACCTACCCCGGTGGGATGGAGGTCC
TATAAATTAACCTTTGTCCGTTCGTTCGTTCGTTCGTTATAAGCTTTCCT
CGTGATTGGCTCATTAGTTTTTTTCTGATTTTTTGCACAAAGATGTGTAA
CTATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAGAAAAAAAATTTT
TTGGCCAAATTTGGTCCAAAAAACGGCTGAAAACGGGTTTTTTGGACTTT
GTGAAAAATTGGATCATTAACTTTTTCTGATTTTTTGCATGAAAGTAGGG
TACCATCATAGGTAAAATATGGCTCAAGCAGATTTTTTCAAAAAAATTTA
GTTGGCCCAAAAAACGCATGTTTATCTATTATTAAGCATACATCAATGTT
CTTAGTTAAATTACTCAATTTTTTTATGAAATATATATTTTTTTGCTCAC
GAGTGCTTGCTTTTGAAGAATGTGTGTGATTAGACATGAAATTTTGGTTT
CTTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCGATATTTATTTATAA
GCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTG
ATTCTTAATGATTTTTTGCATAAAGATGCATAACTATAAACCCTCGAATG
TGACGGAGCCCGCCTTTCGAAAAAAGATTTTTGGGCAAATTTGGGCCAAA
AACGGCTAAAAAACGGGTTTTTTCGTCTTTGTGAAAAATTGGATTATTAA
CTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAGAT
GGCTCAAGCTGATTTTTTCAAAAAAAATTTGTTGGCTCAAAAAAACGCAT
GTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCC
AAATTACTCAATTTTTTGATGAGATAGATGTCTTGAATATGCATGGGCCC
CGGCGAGCCATTTTGAGTGAGAGGGCCAACATTTTAGAAAAAAATGTCGC
CCACCATGGTTGGGCGACGAAGAAAATGTTTCACTTTTTACACCCTCAAA
ACACCTTAAACGATATCTATTTGGGGAGAATAATAGTTTTTGTGGTTTGA
TTTGATCTCAAACCAGCTTAAAATAGTAACTTTTAAAAACTTATGACATG
GTCTACCAAAAAGTGGGGGGGGCCATGGACCCCCCGGCCCATGATATGAA
AGAATATTATTTCAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTTAA
TAAGAAACAAACGACTAATTCTGATAGATCGTCACTATTTGTGTTCTGAA
TGATTGTTTAATGGTCACGCTCACGTAGATATCAATTATATATGTGTTAA
ATGCGTAACCAGGTAGGTCCATAAAAGTATCACTTGTTCCAAGAACTCTT
TATCTAGATTTTAGAAAAGGAGATTCGATGTTTTCATTCTACATTCTTTA
TCTTTTGTTTCAGAAAAAATTATCGACTTTTGACGTTGGTTCCAATCTGA
TTGAAGAGATCGAAAATATTGAACATTTAGAAGAATTGTCAGAATTTTGG
GTATGTATTAAAGAAAACAAGATAACCTTACATCCATACACCCCTGTCTC
ACAATTTTTAATCATTGAATTTCAAATGGGGGTGAAATCAGAGTAAATTT
TCCAGTGGGGCTAAAATTCTAGGGTATTTTTCCCACCGGGGACGAAATTT
TTGCCAAATTTTCAAGTGGGACTGAGGCCCTAGCGGGTATGTGACACAGG
GGTGCATCCATTAAATGTTTTTGTCGCAAGTTCTTTTTCAAATGCCCCCT
TGGTTAGACTGTCAGCATCTAATATGTTTCTTATAACAGAAGCTATTTCA
AGAGATGCGTAAATTCCAAAATCCTTATGGTACTCTTATTTTCTCTCTTT
AGTGTAACGATAACAAAGTTAGTAATTGGAACGGCATTGAAAAACTGCGT
CCCTTGAAGAAATTAGAAACAGTTTACTTGGAACGAAATCCGTTGGAACT
TCAAGATCGATCAGGATACCGGCGGAAGATTTTACTCGCATTACCACAAA
TCACACAATTAGATGCTACCATGACCAGATAACGTCTAGAAAACTTTGAA
TGAATTTAGCTAAACTGTTAACTAGCTCTCACTCTCCCTTGAGAGAGTTT
GAACCATTTGCGGAAGAAACATCTAATTACTTAACATAATCATGACATAA
TGTAGCCTGGCCTTCAAAAAAGATCTCAAATATTCTTTTAGGACTAGCTC
CTGGTATTTGGCATTATTATTAAAATCTAGAGGAACAACTGTTTCAGTGA
CGCGCTCTATAGACTTTTAGTACGTGGTATCATAAGCGAATTTCTTACCA
CGAGAAAAATTTTCCTGCAATTTTATAGCATTCATTTGAGTCGGGATAAT
TTTGGAAGTTCAAACTTGAAAAAAAAAATACTCAGAATCTGTAGGGATTT
CCTGTCTTGTGTGAGTGTTGAAAACAATTGAAAACGTATGAGATTGGGCA
AATGTTTTGTAGGGTGATGAAAAAGTTGGGGTACATTCGATCTTCCCCTG
AAAATATGGATCACTTCACAAAACTTTTTTTCCCCGATGAGGTATTTTAG
GGTCATTTATTCATATTTTGCACTTTGTACATATTGTTATATAAGAATAT
GTTCGTTTCACTTTAAAATACATTTTCGTTTTTC

Coding sequence (CDS) from alignment at sc0000028:695491..705224-

>TCONS_00003500 ID=TCONS_00003500|Name=TCONS_00003500|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000028:695491..705224- (Clytia hemisphaerica)
ATACACGGGGACGATTTGGATAAGTTATCTAAACACATAACCTTTTCCTT
GTCAAGTTTCCTTTACTTTTTACTTATTTCTTTCAGGGAAAAAATAAATT
ATATTCAATTACAAAAAATAAAAAGAATGTCCGATTCGCCGGTGGATTCT
GGGAACGAAATTGAAGAGGAAGAAAAGCTTTCGGATGGAGAACCTGATGA
AAAGAGAGTCGCACACATCAAGGAGGACGACACAGACGTTGATTTGACAC
ATGCGCGATTGGATGAAGTTCCGTCGTTAAGCCATGTCAAAAATTTAGAG
ACATTATGTCTTCGGCAAAACCGAATCAAGAAGATTGAAAATTTGGGCAA
CCTGTCATCATTGGTTGACGTTAGTTTCTATGACAACCTGTTGACCACTA
TTGAAGGACTTGATGATGTGGTCAATCTCACTTTTTTGGACGTATCATAT
AACAAGACGAAGCGTATACAAAACGTTGAACACTTGACTAACTTAAAGAA
GCTGTTCCTCATAAAGAATCGAATCTCCAGGATGGAGAACCTCTCCACCC
TCATCAACATCACCATGCTTGAACTCGGTTCAAATCGCATTCGTAGGATT
GAGGGTATTGAAACATTGGTCAACCTTGAAGAATTATTTTTGGGACAGAA
CAAAATCACCAAACTGGAAAATTTAGATTCATTGCAAAGTTTAAAACTGC
TGAGTATTCAGAGCAATCGAATCATCAAGATTGAAGGTTTGGGAAATCTA
CACAATCTAGAAGACCTTTATTTGAGTCACAATGGAATCAAAAAGATTGA
AAATTTGGAAAATAATAAAAAATTATCGACTTTTGACGTTGGTTCCAATC
TGATTGAAGAGATCGAAAATATTGAACATTTAGAAGAATTGTCAGAATTT
TGGTGTAACGATAACAAAGTTAGTAATTGGAACGGCATTGAAAAACTGCG
TCCCTTGAAGAAATTAGAAACAGTTTACTTGGAACGAAATCCGTTGGAAC
TTCAAGATCGATCAGGATACCGGCGGAAGATTTTACTCGCATTACCACAA
ATCACACAATTAGATGCTACCATGACCAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001945XLOC_001945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003500-exon-sc0000028-1575043694:705034..705224TCONS_00003500-exon-sc0000028-1575043694:705034..705224Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:704415..704458TCONS_00003500-exon-sc0000028-1575043694:704415..704458Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:703940..704005TCONS_00003500-exon-sc0000028-1575043694:703940..704005Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:701667..701797TCONS_00003500-exon-sc0000028-1575043694:701667..701797Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:700974..701136TCONS_00003500-exon-sc0000028-1575043694:700974..701136Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:700326..700442TCONS_00003500-exon-sc0000028-1575043694:700326..700442Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:699032..699136TCONS_00003500-exon-sc0000028-1575043694:699032..699136Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:696625..696711TCONS_00003500-exon-sc0000028-1575043694:696625..696711Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1575043694:695491..696272TCONS_00003500-exon-sc0000028-1575043694:695491..696272Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:705034..705224TCONS_00003500-exon-sc0000028-1510915933:705034..705224Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:704415..704458TCONS_00003500-exon-sc0000028-1510915933:704415..704458Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:703940..704005TCONS_00003500-exon-sc0000028-1510915933:703940..704005Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:701667..701797TCONS_00003500-exon-sc0000028-1510915933:701667..701797Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:700974..701136TCONS_00003500-exon-sc0000028-1510915933:700974..701136Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:700326..700442TCONS_00003500-exon-sc0000028-1510915933:700326..700442Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:699032..699136TCONS_00003500-exon-sc0000028-1510915933:699032..699136Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:696625..696711TCONS_00003500-exon-sc0000028-1510915933:696625..696711Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1510915933:695491..696272TCONS_00003500-exon-sc0000028-1510915933:695491..696272Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:705034..705224TCONS_00003500-exon-sc0000028-1491911889:705034..705224Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:704415..704458TCONS_00003500-exon-sc0000028-1491911889:704415..704458Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:703940..704005TCONS_00003500-exon-sc0000028-1491911889:703940..704005Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:701667..701797TCONS_00003500-exon-sc0000028-1491911889:701667..701797Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:700974..701136TCONS_00003500-exon-sc0000028-1491911889:700974..701136Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:700326..700442TCONS_00003500-exon-sc0000028-1491911889:700326..700442Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:699032..699136TCONS_00003500-exon-sc0000028-1491911889:699032..699136Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:696625..696711TCONS_00003500-exon-sc0000028-1491911889:696625..696711Clytia hemisphaericaexon
TCONS_00003500-exon-sc0000028-1491911889:695491..696272TCONS_00003500-exon-sc0000028-1491911889:695491..696272Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003500-proteinTCONS_00003500-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:695491..705224 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
102.785	96.4446	123.673	119.663	19.8378	15.5112	34.6736	35.3885	38.8005	29.3907	27.4766	30.8722	31.1328	25.0928	28.7578	29.297	45.7937	53.4795	23.2229	29.3927	43.7255	42.6931	45.2393	42.1952	35.7589	39.0319	17.7063	11.0196	21.1233	21.0584
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR003603U2A'_phosphoprotein32A_C
IPR032675L_dom-like
IPR025875Leu-rich_rpt_4
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00003500 vs. Swiss-Prot (Human)
Match: PP1R7 (Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 7.223e-70
Identity = 163/296 (55.07%), Postives = 213/296 (71.96%), Query Frame = 2 
Query:  194 PDEKRVAHIKEDDTDVDLTHARLDEVPSLSHVKNLETLCLRQNRIKKIENLGNLSSLVDVSFYDNLLTTIEGLDDVVNLTFLDVSYNKTKRIQNVEHLTNLKKLFLIKNRISRMENLSTLINITMLELGSNRIRRIEGIETLVNLEELFLGQNKITKXXXXXXXXXXXXXXXXXNRIIKIEGLGNLHNLEDLYLSHXXXXXXXXXXXXXXXSTFDVGXXXXXXXXXXXXXXXXXXFWCNDNKVSNWNGIEKLRPLKKLETVYLERNPLELQDRSGYRRKILLALPQITQLDATMTR 1081
            P +    ++  D  DVDL H R+ ++     +K ++TLCLRQN IK IENL  L SL ++  YDN +  IE L+ +  L  LD+S+N  + I+ V+ LT LKKLFL+ N+IS++ENLS L  + MLELGSNRIR IE I+TL NLE LFLG+NKITKL+NLD+L +L +LS+QSNR+ KIEGL NL NL +LYLSHNGI+ IE LENN KL+  D+ SN I++IENI HL EL EFW NDN + +W+ +++L+  + LETVYLERNP  LQ    YRRK++LALP + Q+DAT  R
Sbjct:   66 PVDMETINLDRDAEDVDLNHYRIGKIEGFEVLKKVKTLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEGVDKLTRLKKLFLVNNKISKIENLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNP--LQKDPQYRRKVMLALPSVRQIDATFVR 359
The following BLAST results are available for this feature:
BLAST of TCONS_00003500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PP1R77.223e-7055.07Protein phosphatase 1 regulatory subunit 7 OS=Homo... [more]
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