TCONS_00003558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003558
Unique NameTCONS_00003558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003558 ID=TCONS_00003558|Name=TCONS_00003558|organism=Clytia hemisphaerica|type=transcript|length=3828bp
ttaggaTATAAACAgagattattaaaaaaaagttcaccAGCAACCAATAC
ATAAAGTAAATGATCACAAAATGAAAAGAATGCGAGGTAAAATTAACCCC
AGTTATAACAATGGGGCAGATGAAAATTATAACATGAAAAAAGACTTTTT
ACATATGAGTGAAATGGACTTCACAAAATTTTTATTAGACCAGAAGCATC
CCAAAGATGAAAAATCGAAAGATTATTGGAATAAAGCtttaaggaaaatt
tctaaCGTTTCTAAGTGGAAACATTTGGCGTCGTGTCGCCGGTCACATGA
AACTAGCCGTCGCTCAATGACGCCAAAACCAGGGGGACCGCTAACCAAGA
AAAAATCTGAGGAacaattttttgagaatttgaaCTCCACTTTGAACGGA
ATCGCATCCGAATGCGAAGAATCAGATTCCGAATCTGATGACGACTTGCA
TCGATCTCCTTCGCCTATCCGACAGAATAGAGGCCATCATCACCACCATG
CAGTTCGAGATTTATCAAAATCAAGCAATAAAGCATTGATTATATATTTA
TCCAAACTAGCCCGTAGTAAAAATGTAGATGATGAATTAGACTTGGATTT
CATTGAATCTCTACTCAATAACGGTGCAGATATCAATACTGCGGACCGTT
ACGGACAAACAGTTTTCCACGAGGTTGCTCGCACGTGGCACTGTGACGTA
GGGAAGTTTATCCTTGAACAGAATGCAGATATTAACAGTCGTGATAAGTT
TGGTCGAACTCCTCTTCATGTGGCTTCTGCAGTCAATTATCCTGAAATGG
TCaaatttcttatcgaaaatggAGCGGACAGAGATGCGCGTACGTTCGGT
GAAGAACAAACACCTGTTCATTATGCAGCCAAAAACGATGCGGTTGATTC
TCTAAAAATGTTGTTGAAGATTGGATGTGATATTGAAGTCCGTGATAGTA
AGATGAGAACACCTTTACAAGTTGCTGCTGAATTAGATCGCTCAGAGACC
GCCCTCTACTTAGTCGAGCAGGGCGCCACGGTAGGCGTTTGTGACTCAAG
TGGACTATCCGCCCTTAGTCTTATGATCGAAAAAATGCCACCTACCGCCA
AAGTCGCTCTTAATCAGTATCATGTGACAGACCGCCCGAATCGtaaacaa
tatttttatttggatcTGTTGGAGCCGATTCAGCCAGGAACTATCCAACA
ATTCGCAAGAACCCCCATGCAGGTGGTAATCCAAGGCAAACAAATGAATC
TTTTACTACATCCTGTCTTCCGTCGGCTTCTACAAGTCAAGTGGAATCAT
TTTGCACGGAACCGACACATGTGGCACCTGTTAGGTCAATTCATGTTTGT
TTTATTATGGTCAATTGTTGCTATCAGTACTCCCACTGCCAGCGTTTCTG
AATATTCTCAACCCTTCTCTAAAACTTGGTGGCGTGTCATTCTAGAATCG
CTCGCAGTACTGGCAACTCTCATCTTTATCGTACAGGAACTATATGAATG
GCGTTGTTCAATACGAGAACACAAACGTTTATCGCGATGGCGGAGTTCTG
AATTACAAAAAGATTTGATGTATTGTCATCCGAGATGGCCTGAAGAACGG
AAATACATTTTGCAGGAACTTGAACGGATACAAGGTTCGCGGATCTCCTA
TTTTGCTGACTGGTGGAATATCTTCGATTGGATTGTTTACATCTGGATAT
CCGCTGGTGTTGTAGTCCGTGTTATTGCGTTGTGTGGAGACGAAGAAGCT
TCGAATATTCACCGAGAAATTCTGGCATTGTCCATGATCGTGATATGGAT
TCGTTTATTGAAAGCAATGAGAGCTTTCCAAGCACTAGGACCATTCATTG
TGATGCTTGGACATATTTTACGTGATACATTACGTTTTGGCTTCCTTTAT
TTCGAATTCTTCATTCCTTACATTATTGCCTTCTGGATGTTGTTTGGTGG
AAGCGAACGCGCGGCCATTATGGCGCGATCGAAAGAGTCAGGTGACGGAT
GGGAACAAGTGAACGATTTGATATACTCTGTATGGCTTGTCACCGTGGTT
GGGGAGTATGACTTTAATGCTATTGTCTCTGTTGATAAACTTATGGCTCA
GATCTTGGTCGGTACTTTTACTGCTCTGTCCGGAATTCTTCTCCTGAATT
TATTCATTGCTTTGATGTCGGACACCTTTCAGAGAGTTTATGATAACGCC
AAAGCTAACGCCCTCATGCAGATGGCGAACTCTATTAATACACACCAACA
GAACATGGGAGCGAAATCAAACGACCGATTCAGGTTGTTCATTCAAGGGA
AATGTGCTCCTGAGGTTTTATATTACGATGACGACGATAATCAAGAAGAA
GGAGAGCTTCAAAAAGTCACCATTCAAATTAAACAAGTAGTCGATGAAAT
CAGGGAAGAGATTGAAGAAAAACTACCCTCTGCAGAGACTATAAATCAAA
TGCAATCTCAGGGTCTGCAAAAGTTCGACGAAATGTCTGTCCAGTTTAAT
CAGCAGGCTCTCAAGTATgaacaagaaataaaaacaatgaacATGAAAAT
AGACCGATTGACTGATCTGGTCACTTTAATGCTTGGTGGAAGTGATAAGG
CGGCCGCCCTATTGAGAGAAAGTAAAGAGGGCGGTACGGCGGAATCACGA
CGAAAACTACCGtctatttttgatttgaaaccAGGTAGGTTTCAACAAAC
GCCACAAGACAAAGAACAAAAAGACGACGAGAAGGAAGAATGATAATTGA
TTGTTTATAACACCCCTTTTTTACAGATCCACTTGGAACCCATCTCAcag
gaaaaattggccaaaatgtcGTCCCCTGTGGATAATTCTACTCTATCTTT
TTCCCTATTGGGAAATTATCACAGTGAGCGaaccctcactgcaaaatatg
taCTGTTTTTTCCATCAcgactgaattttctggctcgaaagcaatggaat
tcaaatccccagccataaaaacatggaaatatcaatccccattgagtttt
ggtctgttatttttacccccaacTGGCTGAAAATATCCTATCCCGGGCGG
GGGggaggggggcactcgattttgaaaacgaccgtacgttcggccaaaaa
tcaggtctctaaaatcggacccttacagtgctccggtaggtcacttacct
gaaATGCCCCCCCCGGATCCTAcctggtctgtgagaaggggatgccTTAC
ATATTTGAGATTAAATTATTGAAATGCATGTGGTGGTCGAATCTGTACAT
ATTTGTAAGTTTTCTCAACGTTGAAAAAAATCGAGTTTGGAATCCGGGAT
CAGCAATAATGAACACTAGTAACAATTAACCTTTTTTCAATACATATTTA
AACGACAatgtttaaaacaaaagataaaaataatttcagcTCACGGTTGA
ATCGACTCAGATACCTCCATAGTTAGTCACTTTTGGAACAATTGAAGACT
TAGAGAATATACTAGTCATCACCCGGTGTCGCACTCaccgaggagtagat
aagcagaacgcatcataagccctttggataGTACATAATTATATCATTAT
TAGTATATGTAGACATTCCTTGATTTAGGGGAggaaaatattttagattt
tatttttttaacactattttatatttttaccacggataatattatatatt
ttcgacactgaaaaatagtttttttatgttgttttttttacaagaaagtC
ACTAATTAATTTAGATATGTATATATACGAATATTTAACATAAAGTATGA
TGCGTGATGAAAAAAACTGACTGTAATTATTGATTGGTCGCAATCAAAGT
TAAACTTTAGCAGATTTTCGGAATGGAG
Run BLAST on NCBI

protein sequence of TCONS_00003558-protein

>TCONS_00003558-protein ID=TCONS_00003558-protein|Name=TCONS_00003558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=890bp
MKRMRGKINPSYNNGADENYNMKKDFLHMSEMDFTKFLLDQKHPKDEKSK
DYWNKALRKISNVSKWKHLASCRRSHETSRRSMTPKPGGPLTKKKSEEQF
FENLNSTLNGIASECEESDSESDDDLHRSPSPIRQNRGHHHHHAVRDLSK
SSNKALIIYLSKLARSKNVDDELDLDFIESLLNNGADINTADRYGQTVFH
EVARTWHCDVGKFILEQNADINSRDKFGRTPLHVASAVNYPEMVKFLIEN
GADRDARTFGEEQTPVHYAAKNDAVDSLKMLLKIGCDIEVRDSKMRTPLQ
VAAELDRSETALYLVEQGATVGVCDSSGLSALSLMIEKMPPTAKVALNQY
HVTDRPNRKQYFYLDLLEPIQPGTIQQFARTPMQVVIQGKQMNLLLHPVF
RRLLQVKWNHFARNRHMWHLLGQFMFVLLWSIVAISTPTASVSEYSQPFS
KTWWRVILESLAVLATLIFIVQELYEWRCSIREHKRLSRWRSSELQKDLM
YCHPRWPEERKYILQELERIQGSRISYFADWWNIFDWIVYIWISAGVVVR
VIALCGDEEASNIHREILALSMIVIWIRLLKAMRAFQALGPFIVMLGHIL
RDTLRFGFLYFEFFIPYIIAFWMLFGGSERAAIMARSKESGDGWEQVNDL
IYSVWLVTVVGEYDFNAIVSVDKLMAQILVGTFTALSGILLLNLFIALMS
DTFQRVYDNAKANALMQMANSINTHQQNMGAKSNDRFRLFIQGKCAPEVL
YYDDDDNQEEGELQKVTIQIKQVVDEIREEIEEKLPSAETINQMQSQGLQ
KFDEMSVQFNQQALKYEQEIKTMNMKIDRLTDLVTLMLGGSDKAAALLRE
SKEGGTAESRRKLPSIFDLKPGRFQQTPQDKEQKDDEKEE
Run BLAST on NCBI

transcript from alignment at sc0000030:377330..387542+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003558 ID=TCONS_00003558|Name=TCONS_00003558|organism=Clytia hemisphaerica|type=transcript|length=10213bp|location=Sequence derived from alignment at sc0000030:377330..387542+ (Clytia hemisphaerica)
ttaggaTATAAACAgagattattaaaaaaaagttcaccAGCAACCAATAC
ATAAAGTAAATGATCACAAAATGAAAAGAATGCGAGGTAAAATTAACCCC
AGTTATAACAATGGGGCAGATGAAAATTATAACATGAAAAAAGACTTTTT
ACATATGAGTGAAATGGACTTCACAAAATTTTTATTAGACCAGAAGCATC
CCAAAGATGAAAAATCGAAAGATTATTGGAATAAAGCtttaaggaaaatt
tctaaCGTTTCTAAGTGGAAACATTTGGCGTCGTGTCGCCGGTCACATGA
AACTAGCCGTCGCTCAATGACGCCAAAACCAGGGGGACCGCTAACCAAGA
AAAAATCTGAGGAacaattttttgagaatttgaaCTCCACTTTGAACGGA
ATCGCATCCGAATGCGAAGAATCAGATTCCGAATCTGATGACGACTTGCA
TCGATCTCCTTCGCCTATCCGACAGAATAGAGGCCATCATCACCACCATG
CAGTTCGAGATTTATCAAAATCAAGCAATAAAGCATTGATTATATATTTA
TCCAAACTAGCCCGTAGTAAAAATGTAGATGATGAATTAGACTTGGATTT
CATTGAATCTCTACTCAATAACGGTGCAGATATCAATACTGCGGACCGTT
ACGGACAAACAGTTTTCCACGAGGTTGCTCGCACGTGGCACTGTGACGTA
GGGAAGTTTATCCTTGAACAGAATGCAGATATTAACAGTCGTGATAAGTT
TGGTCGAACTCCTCTTCATGTGGCTTCTGCAGTCAATTATCCTGAAATGG
TCaaatttcttatcgaaaatggAGGTAAGCATATGTATTTGATCTAATTC
CACAGATAGTTGAAAGTTCCAAATATTCCTTGAAAGGGATTGAATTGTGT
CTTTTTATTAACGTCAAAAAGAGGCATTGCTTTGATTAAGACTTATTTAG
ACAGTCGACTTTCGTCAAAAAAGGGAATTGAAGCCAGAAAGTCAACCATC
TACACTCATTTCATTTCAGCGGACAGAGATGCGCGTACGTTCGGTGAAGA
ACAAACACCTGTTCATTATGCAGCCAAAAACGATGCGGTTGATTCTCTAA
AAATGTTGTTGAAGATTGGATGTGATATTGAAGTCCGTGATAGTAAGATG
AGAACACCTTTACAAGTTGCTGCTGAATTAGGTAAGCTTGGTGACCGTTG
ATATCTCTTATTCGATTCCGAGTTCAAAGCGTTTTATTCGAGTAAGAAAT
ACTCGAATTATTGAGAAGTGCTTTAACAAGTCACCGCTGAATTAGAAGAG
CTTGATAATCGTTAACTTTCTCCAATTTGATCTTCAAGAAATAATCGAAT
CTTGGagaagtgattttttttcaccAGTAAAAATCTTAAGTAAATCAGTC
AGCTGAGGACACATTTAATAGTTTACGGAACATTAATGTGGTGTGTTTTT
AAAAACTGGATTGAAATATTATTTGTCTGAAGAGTTTAGTTAAATTGTTA
ACTTTTTATCCTCGTTCGATTTACGTCTAAACAATACCTTTACGCATGAT
CTGCACTGTGAAATAGTCAATCTGCTACTCAATTTTTAGATCGCTCAGAG
ACCGCCCTCTACTTAGTCGAGCAGGGCGCCACGGTAGGCGTTTGTGACTC
AAGTGGACTATCCGCCCTTAGTCTTATGATCGAAAAAATGCCACCTACCG
CCAAAGTCGCTCTTAATCAGTATCATGTGACAGACCGCCCGAATCGtaaa
caatatttttatttggatcTGTTGGAGCCGATTCAGCCAGGAACTATCCA
ACAATTCGCAAGAACCCCCATGCAGGtaccatttttatttattgttgATT
ATTCCCTGTTGACCACATGAACACGTTACATACAGACACGAATTATTTCC
AAACTAAATGAAGCTACCCTTTCGACTAATTTTAACCAAATGATAGGAAG
TGCCGCACCTGCAGACCAAATTTAAAACCTGATTGTCTTAAAAAGAGTAC
ATACACGTGTTTCTCTTCATAAAAACATCTAACATTTTTTAACCCTTCGG
ATGTTCGTATTaaacttttgagttttaagcctaaaaatgttctcattttc
ccccatggtatttttgtccattttcctaagaagtcgggtgttttagagtg
tctgcgaagccttaaaatgatctTAACTTGCTCCTATATTCTGGCCATCG
TAACCTTATGTTGTTATAGTTTCTTCTTattaaaaacgtgtatcaaTAGG
TTTTTATATTAAACTTTCCAGGTGGTAATCCAAGGCAAACAAATGAATCT
TTTACTACATCCTGTCTTCCGTCGGCTTCTACAAGTCAAGTGGAATCATT
TTGCACGGAACCGACACATGTGGCACCTGTTAGGTCAATTCATGTTTGTT
TTATTATGGTCAATTGTTGCTATCAGTACTCCCACTGCCAGCGTTTCTGA
ATATTCTCAACCCTTCTCTAAAACTTGGTGGCGTGTCATTCTAGAATCGC
TCGCAGTACTGGCAACTCTCATCTTTATCGTACAGGTAAATTAGAATtca
caaaaatcatttttgtagtTTGAGTTTTTATAGATTCTTTAATTTAAAAA
CCTTATTTTAGCTAACTTTGACCTTTTTTAGGCCTGATCTTTTTCGCATA
CGGAGCTATAATCAGTTTGcacattttttgagtttaaagatttttggttC
TTATCTTTAATAACTTTCATTTAATTAAACATTCTTACATAATGGAGAAG
TTATctcagataaagatttttgtcaGCTCGCCTCTTTAAATAAAAACTCG
TAGCCACGCTGCTGAATTCAACTGAATTACTTTAAACTACGGATCTATTT
TGCAGGAACTATATGAATGGCGTTGTTCAATACGAGAACACAAACGTTTA
TCGCGATGGCGGAGTTCTGAATTACAAAAAGATTTGATGTATTGTCATCC
GAGATGGCCTGAAGAACGGAAATACATTTTGCAGGAACTTGAACGGATAC
AAGGTTTAATTTTCTTCCATTTCcttgttttgttttatcatgTCGCCGTT
GCCaaatcaaaaaactttatttcgATTCGTTGTACACAGGAAaagatttt
cgatttccaaggttggaaattcaatatttttgggttggaaattcaatatt
ttttgggttggaaattttggttttataattgaaggttggaaattttagcg
attaccttaagctgatttggaaaacgtaaattacccataggttttgtaga
ataaaccaatgcccttgaaaaatcaagtgaaaaaaccccatgtagaaatg
acaattttccaaggctggttggaaaacatgactttttgggtgggaaattt
ttattttccaaacagtttgggaattgaaaaaaaggtcacaaatcgatgtg
aaaatagatatttttgtaaatttgatacctcgggttgaaaaactagactt
tttgggtcggaaatttgtgtttctcccaaacagtttggaaaaacgttaaa
aatccatgtggatattacatttttggacctttggacctaccccggtggag
gtcctataaattaacctttgtccgttcgtccgttcgttagttattagctt
tcctcatgattggctcgttagttttttctgattttttgcacaaagatgta
taactataaaccctcgaatgtgacggagcaaatttgggccaaaaaacggc
taaaaaacgggtcttttggactttgtgaaaaattaggccgttaatttttt
ctgattttttgcacaaagatgtataactataaaccctcgaatgtgacgga
gcaaatttgggccaaaaaacggctaaaaaacgggttttttggactttgtg
aaaaattaggtctttaattttttctgattttttgcatgaaagtagggtac
catcgtaggtaaaaattGGCTTAAgcagaattttgcaaaaaaaatttgtt
ggctcaaaaaacgtatgtttatctataagaatcactattaataagcatac
atcaatgttcttagtcaaataactcaatttttttatgagatagatgtttt
tttctcaggagggcttacttttaaagaatatgtgtgattcgacatgaaat
tttggttgcttggcgtgtttttatagaaaaactggccaaattcgatattt
tattataagcacattatcaattacttaggtattagcttttctcgagattg
gctctttcattctttacgattttttgcacaaatatgcataactataaacc
ctcgaatgtgacggagcccgatttaaaaaaaaaaaaaattttgggacaaa
tttgggccaaaaaacggctaaaaaatgtgttttttggactttgtgaaaaa
ttggatcattaattttttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtttttatagaaaaactggccaaattcgatatttttttataag
cacattatcaattacttaggtattagcttttctcaagattggctctttca
ttctttacgattttttgcacaaagatgcataactataaaccctcgaatgt
gacggagtccgatttttggaaaataatttttgggcaaatttgggccaaaa
aacggctaaaaaatgtattttttggactttgtgaaaaattggatcattat
ttttttctgattttttgcaggaaagtaaggtaccatcataggtaaaagat
ggttcaaacagatttttgcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNgaaagaatatttcaagagcatgaaattttggtttc
taaacgtgtttttttataagaaacaaacaactaattttaatagatcgtca
ctatttgtgttctgaatgaatgcttaatggtcacgcttatgtagatatca
attatatatgtgttaaatgcataaccaggtaggtccataaaagtatcact
tgtttttaattGAGACTCCTCCTTGCAAAACTAGACTtttggggttggaa
atttgtgtttctcccaaacagtttggaaaacgttaaaaatccatgtggat
atTACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGACTCttccttggaaaactagacttt
ttgggttggaaatttgtgtttctccaaacagtttggaaaacgttaaaaat
ccatgtggaaaatacatttttgtgaaattgagactctttcttggaaaact
agactttttgggttggaaatttgtgtttctccaaacagtttggaaaacgt
taaaaatccatgtggatattacatttttgtgaaattgagactcttccttg
gaaaactagaatttttgggttggaaatttgtgtttctccaaacagtttgg
aaaacgttaaaaacccatgtggaaaatacatttttgtgaaattgaaactc
tttcgattggaaaactagacattttgggttggaaatttttgcttctccaa
acagtttggaaaacgttaaaaatccatgtggaaattacgtttttgtaacc
attttctgcgcatgtcttttgagaaaaccacaagcgatttttcgctcaaa
actgttttgatgtatagctaacctagatattaggttataatgtgagcagt
caagctgtaagtttccgtcaggtgaggcgttctttcggagcggcctcggt
caatcgcagtgagttcgaacagtgaagcacatagggtactcgtgtcatag
tttcaaatggtgccctgctgagctgtgtgagtgatctaagatcaaccacg
tatctgtgcgaacaataacgagagattgaccgggagccatcgagcctagg
ctagcgagtgactgttcacaaaaataaaaaccttgtttaagatctctttt
tccacatctctgccatcactttttggattttggcttttttcaaccggatt
ttcgaaaattccaaccttgtttagcttggattttggcttttttccaactg
aattttaaaaaattccaaccttgtttagcttggattttggcttttttcca
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNatggaaaatgcaaaatttccaaccttggagaatgtcccacatttcc
aggttggattttccattggattttatcttttttccaactaagaaaacttg
aaatttccaactttggaaatcgaaaattttttcctgtggtaTAGCTACGG
AATATTCAGTATTTATAGCCTGGTAGATTTGGAGAAACTCGGAAAATATA
AAAAGTCCATGATAAAGCATTATTTTTAACCAATAAAAACTCCCATAAAT
CTGACtcaaattcaattcaaattcaatccgTGAAGCTTTCCCTCTTTCAA
AGTAATCAtacttattttttttgcaattcatcaTATTATTTCAGGTTCGC
GGATCTCCTATTTTGCTGACTGGTGGAATATCTTCGATTGGATTGTTTAC
ATCTGGATATCCGCTGGTGTTGTAGTCCGTGTTATTGCGTTGTGTGGAGA
CGAAGAAGCTTCGAATATTCACCGAGAAATTCTGGCATTGTCCATGATCG
TGATATGGATTCGTTTATTGAAAGCAATGAGAGCTTTCCAAGCACTAGGT
AAGATCTGGATTTACATAACACCCCTGTCCCAGCTGGtgcataacgttgt
ttcaacgctcatctaacgttatgatgacgttgtgaacgttaaaaaCTTCA
CGGACctaatagctgattggttgtaagtgacgtaaaatcagtcaatatgt
cactttcaaccaatcagctgttgggtccgtattttagttcgaataacAGA
AACGTTCGAATAAAAAAGGTTCGAGTTAGAGAGGGTTGACTGTATTTTCC
TCCATGTGCTTTAATCTAGTACGCATTCTTAAGAGAAATAACAACTTTGC
TTATTTGTATATTCAACTaggtaaaatttattttaggTCGTTTTCCactt
tttatgcattttggttgTACGATAACTGCAAATAATCCTGCCCGGTGGAT
ATTTGTGAATATGATTAAAAGATGTGTAGATGTGTATTTGCAGACCACAA
AGTTCCTAATGATTATTATATTCTATTCAGGACCATTCATTGTGATGCTT
GGACATATTTTACGTGATACATTACGTTTTGGCTTCCTTTATTTCGAATT
CTTCATTCCTTACATTATTGCCTTCTGGATGTTGTTTGGTGGAAGCGAAC
GCGCGGCCATTATGGCGCGATCGAAAGAGTCAGGTGACGGATGGGAACAA
GTGAACGATTTGATATACTCTGTATGGCTTGTCACCGTGGTTGGGGAGTA
TGACTTTAATGCTATTGTCTCTGTTGATAAACTTATGGCTCAGATCTTGG
TCGGTACTTTTACTGCTCTGTCCGGAATTCTTCTCCTGAATTTATTCATT
GCTTTGATGTCGGACACCTTTCAGAGAGTTTATGATAACGCCAAAGCTAA
CGCCCTCATGCAGATGGCGAACTCTATTAATACACACCAACAGAACATGG
GAGCGAAATCAAACGACCGATTCAGGTTGTTCATTCAAGGGAAATGTGCT
CCTGAGGtatgttgtttaatttttcttttctttttttttgatagcCGTGT
GAGTTTAGAGTCTATCTAACAAAAAAATAGAacatagacaaaaagaacga
caaatttcataaagaacgacaaaaaagaacgacaaatttcatatttcgcc
gtccacaacgtctctaattcgaagaaaatctttagtcccttgaagatcga
ataagagagagagagagtcaactgaaCTTAAATTTATCGAAAGAAAAATT
AGGCTGCCTTTCTGCACGTATATTCTGACAGCAGGTAAAATGTGTAGAAG
TAGCAATGTATGGTTTCGACACGAAAAGTTGAAACAGAAGTGCGTTTATT
TGCTTTTGGAGAGCTTCTAAACGACATGCTTGATGTTTTATCTCCCTAGG
TTTTATATTACGATGACGACGATAATCAAGAAGAAGGAGAGCTTCAAAAA
GTCACCATTCAAATTAAACAAGTAGTCGATGAAATCAGGGAAGAGATTGA
AGAAAAACTACCCTCTGCAGAGACTATAAATCAAATGCAATCTCAGGGTC
TGCAAAAGTTCGACGAAATGTCTGTCCAGTTTAATCAGCAGGCTCTCAAG
TATgaacaagaaataaaaacaatgaacATGAAAATAGACCGATTGACTGA
TCTGGTCACTTTAATGCTTGGTGGAAGTGATAAGGCGGCCGCCCTATTGA
GAGAAAGTAAAGAGGGCGGTACGGCGGAATCACGACGAAAACTACCGtct
atttttgatttgaaaccAGGTAGGTTTCAACAAACGCCACAAGACAAAGA
ACAAAAAGACGACGAGAAGGAAGAATGATAATTGATTGTTTATAACACCC
CTTTTTTACAGATCCACTTGGAACCCATCTCAcaggaaaaattggccaaa
atgtcGTCCCCTGTGGATAATTCTACTCTATCTTTTTCCCTATTGGGAAA
TTATCACAGTGAGCGaaccctcactgcaaaatatgtaCTGTTTTTTCCAT
CAcgactgaattttctggctcgaaagcaatggaattcaaatccccagcca
taaaaacatggaaatatcaatccccattgagttttggtctgttattttta
cccccaacTGGCTGAAAATATCCTATCCCGGGCGGGGGggaggggggcac
tcgattttgaaaacgaccgtacgttcggccaaaaatcaggtctctaaaat
cggacccttacagtgctccggtaggtcacttacctgaaATGCCCCCCCCG
GATCCTAcctggtctgtgagaaggggatgccTTACATATTTGAGATTAAA
TTATTGAAATGCATGTGGTGGTCGAATCTGTACATATTTGTAAGTTTTCT
CAACGTTGAAAAAAATCGAGTTTGGAATCCGGGATCAGCAATAATGAACA
CTAGTAACAATTAACCTTTTTTCAATACATATTTAAACGACAatgtttaa
aacaaaagataaaaataatttcagcTCACGGTTGAATCGACTCAGATACC
TCCATAGTTAGTCACTTTTGGAACAATTGAAGACTTAGAGAATATACTAG
TCATCACCCGGTGTCGCACTCaccgaggagtagataagcagaacgcatca
taagccctttggataGTACATAATTATATCATTATTAGTATATGTAGACA
TTCCTTGATTTAGGGGAggaaaatattttagattttatttttttaacact
attttatatttttaccacggataatattatatattttcgacactgaaaaa
tagtttttttatgttgttttttttacaagaaagtCACTAATTAATTTAGA
TATGTATATATACGAATATTTAACATAAAGTATGATGCGTGATGAAAAAA
ACTGACTGTAATTATTGATTGGTCGCAATCAAAGTTAAACTTTAGCAGAT
TTTCGGAATGGAG

Coding sequence (CDS) from alignment at sc0000030:377330..387542+

>TCONS_00003558 ID=TCONS_00003558|Name=TCONS_00003558|organism=Clytia hemisphaerica|type=CDS|length=2673bp|location=Sequence derived from alignment at sc0000030:377330..387542+ (Clytia hemisphaerica)
ATGAAAAGAATGCGAGGTAAAATTAACCCCAGTTATAACAATGGGGCAGA
TGAAAATTATAACATGAAAAAAGACTTTTTACATATGAGTGAAATGGACT
TCACAAAATTTTTATTAGACCAGAAGCATCCCAAAGATGAAAAATCGAAA
GATTATTGGAATAAAGCtttaaggaaaatttctaaCGTTTCTAAGTGGAA
ACATTTGGCGTCGTGTCGCCGGTCACATGAAACTAGCCGTCGCTCAATGA
CGCCAAAACCAGGGGGACCGCTAACCAAGAAAAAATCTGAGGAacaattt
tttgagaatttgaaCTCCACTTTGAACGGAATCGCATCCGAATGCGAAGA
ATCAGATTCCGAATCTGATGACGACTTGCATCGATCTCCTTCGCCTATCC
GACAGAATAGAGGCCATCATCACCACCATGCAGTTCGAGATTTATCAAAA
TCAAGCAATAAAGCATTGATTATATATTTATCCAAACTAGCCCGTAGTAA
AAATGTAGATGATGAATTAGACTTGGATTTCATTGAATCTCTACTCAATA
ACGGTGCAGATATCAATACTGCGGACCGTTACGGACAAACAGTTTTCCAC
GAGGTTGCTCGCACGTGGCACTGTGACGTAGGGAAGTTTATCCTTGAACA
GAATGCAGATATTAACAGTCGTGATAAGTTTGGTCGAACTCCTCTTCATG
TGGCTTCTGCAGTCAATTATCCTGAAATGGTCaaatttcttatcgaaaat
ggAGCGGACAGAGATGCGCGTACGTTCGGTGAAGAACAAACACCTGTTCA
TTATGCAGCCAAAAACGATGCGGTTGATTCTCTAAAAATGTTGTTGAAGA
TTGGATGTGATATTGAAGTCCGTGATAGTAAGATGAGAACACCTTTACAA
GTTGCTGCTGAATTAGATCGCTCAGAGACCGCCCTCTACTTAGTCGAGCA
GGGCGCCACGGTAGGCGTTTGTGACTCAAGTGGACTATCCGCCCTTAGTC
TTATGATCGAAAAAATGCCACCTACCGCCAAAGTCGCTCTTAATCAGTAT
CATGTGACAGACCGCCCGAATCGtaaacaatatttttatttggatcTGTT
GGAGCCGATTCAGCCAGGAACTATCCAACAATTCGCAAGAACCCCCATGC
AGGTGGTAATCCAAGGCAAACAAATGAATCTTTTACTACATCCTGTCTTC
CGTCGGCTTCTACAAGTCAAGTGGAATCATTTTGCACGGAACCGACACAT
GTGGCACCTGTTAGGTCAATTCATGTTTGTTTTATTATGGTCAATTGTTG
CTATCAGTACTCCCACTGCCAGCGTTTCTGAATATTCTCAACCCTTCTCT
AAAACTTGGTGGCGTGTCATTCTAGAATCGCTCGCAGTACTGGCAACTCT
CATCTTTATCGTACAGGAACTATATGAATGGCGTTGTTCAATACGAGAAC
ACAAACGTTTATCGCGATGGCGGAGTTCTGAATTACAAAAAGATTTGATG
TATTGTCATCCGAGATGGCCTGAAGAACGGAAATACATTTTGCAGGAACT
TGAACGGATACAAGGTTCGCGGATCTCCTATTTTGCTGACTGGTGGAATA
TCTTCGATTGGATTGTTTACATCTGGATATCCGCTGGTGTTGTAGTCCGT
GTTATTGCGTTGTGTGGAGACGAAGAAGCTTCGAATATTCACCGAGAAAT
TCTGGCATTGTCCATGATCGTGATATGGATTCGTTTATTGAAAGCAATGA
GAGCTTTCCAAGCACTAGGACCATTCATTGTGATGCTTGGACATATTTTA
CGTGATACATTACGTTTTGGCTTCCTTTATTTCGAATTCTTCATTCCTTA
CATTATTGCCTTCTGGATGTTGTTTGGTGGAAGCGAACGCGCGGCCATTA
TGGCGCGATCGAAAGAGTCAGGTGACGGATGGGAACAAGTGAACGATTTG
ATATACTCTGTATGGCTTGTCACCGTGGTTGGGGAGTATGACTTTAATGC
TATTGTCTCTGTTGATAAACTTATGGCTCAGATCTTGGTCGGTACTTTTA
CTGCTCTGTCCGGAATTCTTCTCCTGAATTTATTCATTGCTTTGATGTCG
GACACCTTTCAGAGAGTTTATGATAACGCCAAAGCTAACGCCCTCATGCA
GATGGCGAACTCTATTAATACACACCAACAGAACATGGGAGCGAAATCAA
ACGACCGATTCAGGTTGTTCATTCAAGGGAAATGTGCTCCTGAGGTTTTA
TATTACGATGACGACGATAATCAAGAAGAAGGAGAGCTTCAAAAAGTCAC
CATTCAAATTAAACAAGTAGTCGATGAAATCAGGGAAGAGATTGAAGAAA
AACTACCCTCTGCAGAGACTATAAATCAAATGCAATCTCAGGGTCTGCAA
AAGTTCGACGAAATGTCTGTCCAGTTTAATCAGCAGGCTCTCAAGTATga
acaagaaataaaaacaatgaacATGAAAATAGACCGATTGACTGATCTGG
TCACTTTAATGCTTGGTGGAAGTGATAAGGCGGCCGCCCTATTGAGAGAA
AGTAAAGAGGGCGGTACGGCGGAATCACGACGAAAACTACCGtctatttt
tgatttgaaaccAGGTAGGTTTCAACAAACGCCACAAGACAAAGAACAAA
AAGACGACGAGAAGGAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001986XLOC_001986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003558-exon-sc0000030-1491911889:377330..378153TCONS_00003558-exon-sc0000030-1491911889:377330..378153Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:377330..378153TCONS_00003558-exon-sc0000030-1510915933:377330..378153Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:377330..378153TCONS_00003558-exon-sc0000030-1575043694:377330..378153Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1491911889:378349..378510TCONS_00003558-exon-sc0000030-1491911889:378349..378510Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:378349..378510TCONS_00003558-exon-sc0000030-1510915933:378349..378510Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:378349..378510TCONS_00003558-exon-sc0000030-1575043694:378349..378510Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1491911889:378919..379154TCONS_00003558-exon-sc0000030-1491911889:378919..379154Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:378919..379154TCONS_00003558-exon-sc0000030-1510915933:378919..379154Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:378919..379154TCONS_00003558-exon-sc0000030-1575043694:378919..379154Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1491911889:379601..379864TCONS_00003558-exon-sc0000030-1491911889:379601..379864Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:379601..379864TCONS_00003558-exon-sc0000030-1510915933:379601..379864Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:379601..379864TCONS_00003558-exon-sc0000030-1575043694:379601..379864Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1491911889:380185..380332TCONS_00003558-exon-sc0000030-1491911889:380185..380332Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:380185..380332TCONS_00003558-exon-sc0000030-1510915933:380185..380332Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:380185..380332TCONS_00003558-exon-sc0000030-1575043694:380185..380332Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1491911889:384474..384677TCONS_00003558-exon-sc0000030-1491911889:384474..384677Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:384474..384677TCONS_00003558-exon-sc0000030-1510915933:384474..384677Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:384474..384677TCONS_00003558-exon-sc0000030-1575043694:384474..384677Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1491911889:385160..385635TCONS_00003558-exon-sc0000030-1491911889:385160..385635Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:385160..385635TCONS_00003558-exon-sc0000030-1510915933:385160..385635Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:385160..385635TCONS_00003558-exon-sc0000030-1575043694:385160..385635Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1491911889:386029..387542TCONS_00003558-exon-sc0000030-1491911889:386029..387542Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1510915933:386029..387542TCONS_00003558-exon-sc0000030-1510915933:386029..387542Clytia hemisphaericaexon
TCONS_00003558-exon-sc0000030-1575043694:386029..387542TCONS_00003558-exon-sc0000030-1575043694:386029..387542Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003558-proteinTCONS_00003558-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:377330..387542 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42816	1.48528	0.962788	0.616902	37.7817	28.6187	14.9532	16.1945	6.03649	10.4355	7.27997	6.5317	3.03663	2.66352	2.442	3.56355	5.21648	4.05999	3.27334	4.00449	4.89749	5.06486	3.70795	4.36245	16.9084	14.6071	9.62181	8.34587	4.29017	3.94856
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00003558 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.496e-17
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 2 
Query:  593 LDFIESLLNNGADINTADRYGQTVFHEVARTWHCDVGKFILEQNADINSRDKFGRTPLHVASAVNYPEMVKFLIENGADRD-ARTFGEEQTPVHYAAKNDAVDSLKMLLKIGCDIEVRDSKMRTPLQVAAELDRSETALYLVEQGATVGVCDSSGLSALSLMI 1078
            L  +++LL  GA  N ++   +T  H  AR  H +V K++L+  A +N++ K  +TPLH A+ + +  MVK L+EN A+ + A T G   TP+H AA+   V+++  LL+          K  TPL VAA+  +   A  L+E+ A       +GL+ L + +
Sbjct:  417 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG--HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 577
The following BLAST results are available for this feature:
BLAST of TCONS_00003558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANK11.496e-1733.13Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3[more]
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