TCONS_00003610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003610
Unique NameTCONS_00003610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003610 ID=TCONS_00003610|Name=TCONS_00003610|organism=Clytia hemisphaerica|type=transcript|length=3205bp
CAGTGGATTCTTGGCTCCGGTGGATTGAGGGGTTTTGTGTGAAAATCAGA
GGTGTCAAAATGGAGCCCAACTATGGTGAGAATTttgaacaacaacaaaa
taaatttgaagaaaagaaaatcgGACCTACTACAGAACTACAAGATGATC
CTTCCAAGGAGGAATACTACAtcccaccaccaccaccaccaccaccatca
acgacccctactacaggccagTACCAACTGAATGTGATACAGTCATCAGT
AGGCCTCCCACAGCCCGTTCCACCCACGCAACAGACCCATCCTGAATGCT
CGCCTCCACCTCAAAATCTATGGAACCAACCGTCAAACAACTCCATCCCA
AACTATTCTTATTATCCACCTACCGCACCATCTTTTTACTCGGCACCTGG
CACTGGACCTGCGACTCAAGACCTACCACCGCCACCGCAGTTCAATAACC
AATCATCAGAATATAACATGTATTATCCAGCTTTGTCGCCATCAACTGGA
CCTTCAACTTTCGGCCCCGGCGGTGCAATGCCACCAGCACAATATTTAGA
TTACGGTAAACACTGCAATGTTGACGATGATGATGAGAATCGACCTGTGG
TGACGTTGGAGAATAAATCTTTATGGCAAGAATTTCATGAAGTTGGTACA
GAAATGATCATCACTAAAACTGGAAGGAGGATGTTTCCGCCCATAAAATT
CCGTATATCAAACCTGGAACCTAAAACAAAATATATCCTCATCATGGACA
TCATTCCTGCTGATGATTGTCGTTATAAATTCAGCAGGGGAGCGTGGTTA
ATTGCCGGAAAAGCCGACCCACCGATGCCTAAACGGATGTTTATTCATCC
GGACGGACCGAACACCGGGAATCAGTGGATGTCGAAAAGTATTTCATTCA
ATAAAATGAAAGTCACCAATTGTGTTCAAGGAAAGAATGGATATCCTATT
TTGAATTCCATGCATAAATATCAACCTCGTTTCCATATCGCGAAAGTTGC
AGACTTCTATAAAATGAACATGTCCAATCTGAAGACCTTTGTTTTCCGAG
AAACCGAATTTTTGGCTGTCACAGCCTACCAGAACGAAAAGGTGACAAAA
CTGAAGATCAAATACAATCCATTCGCCAAAGGTTTCCGTGAGGATGGAGC
TGCTGGTAAACGTATTTCAAGAATCGAGAATAACGAGAGTGAtggtgaag
aagaaaaatcaacttCGCATCAAAACAAGAAAACCAAATTCTCACCAACA
CCCAATGAACTAAAAGGAAAACACAAATTAGACGAATCACCAGAATCTGG
AATTTCCAGTTTAAATTCAACTCCAAGCAAGATGCGTTTCAAAGACACAA
TTTCACCTCCAACACATATATCGTCTTACGAAAGTCACATCAAATCACGA
CGTTTCCTTTCCCCGACAGCCATGTTTACTTCATCACGTGATCAATTCTT
CTCATCACGTGATTTTTCACCACGTGATGAGTTCCGATATCATTATAACC
CGGCCGCATCGCCTTCCCCATCCCCGAGTTTCGAAAATTATCTCCCACAA
AACACTTCAGCGAATTCAGTATTACCAATGGTCCTACCCGGATCTATTTA
TTCGTCCGGAAATCCTCAAAATACAGTGAATACACCCGGTACTGAATATA
ATAACGGGGCGAGTTTCCACGATCACGTAGGAGCAGGAAAATCGCTTAAA
AAACAATTACAACTCAATACGGAACTTTTATCGAGTACTTCTTCTCAATG
GCAGAATTTTGGCAGTTATACCACACCAACTACCAATGTCGGATCACCTT
ATACAcaaaacaattatttttcatCGACCCCCAATTACGGACGGTATGGA
AGCACCCCTCTTTGTAGACACGGGCTGGCGCATTGTGCAGTTTGCTCATA
TAGTAGCtctattttaaattcagctAATTTataatgattatttttgtttc
atttcgattttcgtcttttttgttgttgtgaatatttttcatttttgaat
tttttgtaaaaagaaacttttaaaaagagAGGCCAGAAATAGGacaaaca
cgtttttttataagaacatccaaaatctttgaagccttgggatgttctta
actttttgagattcaagcctaaaaatgttaattaacatattcttattttc
gccattttttgagtgtttttgtctatttccctaagaaattcagtatttta
gagtccgcaaagccctaaaatgttcttaacttgttcttaacattttggtc
atcgaaatcttaagtttttatatagtttgttcttataaaaaaccgtgtaG
TAGTAATTTGCAACTTGGCGACGCTAGTCTTAAGTTATGTTTCAAAGACT
TTAACTTGTAAGCTTTTTCAATACTGTGAAAAAGTCCTGTAAAAGTCGAT
GCCTCTTGTTGTTAGAATTTGCTGATGAACTTTGCAAAGAATATTTGCTA
ATAGCAAAGTTAAGTGTAAATAGGGAGTTAATGTATCAGAGGATTTCGAG
GGCAACGATAAAGTGAAGTCGatgcaaaacaaagtcgatagttgatgtac
ggctctatatcgccgttgctcacctaaacagatgACGGTATTTTGGGTTT
TTTACCTTCGTGAGGACGGCGATTTTGgtgacatgtcaactttgctttat
atcGTCTCCTTCGATTTACATAACTTTGCTAATAGATAAATCACGAACGA
GGACGGACGAATTTCCACTAGCCTTTATTCACAGTAAGGAACTTTTTCTA
CAGGCTAAGTACAAAGCAAGATAGACTTACCTCGCGTAGTATATCCGCTT
TGTAATTTTTCTATCGATACTTTAACATCGCCAATCTAATGTTTTTAAAG
GAGAGCGAATACAAGTGAGATAAATTCTGTTATGAAATATGTACCAAAAC
CATGATAAATAAAGTCTTAACGAAATAAGCTtgcgtcaattttttttgtt
gcgTTCTCATTGTATGACTTCATTTTTAATGTTATTTTTAATTGaacttt
aatttactttaaaTCTTTTGTtcataatttatttcaaaatatacgataat
tttattttttatttatccATTTTGTGACCTTTTGGGCACCTTTTTTTatt
aaatacaattttaaaatttacataTCACTACAAATTGAGCTGTATAttat
atctttaaaattttcaataaaatcgtttttctgaaatatttcaatTAAAT
TGTAC
Run BLAST on NCBI

protein sequence of T-box transcription factor 2-3

>TCONS_00003610-protein ID=TCONS_00003610-protein|Name=T-box transcription factor 2-3|organism=Clytia hemisphaerica|type=polypeptide|length=643bp
VDSWLRWIEGFCVKIRGVKMEPNYGENFEQQQNKFEEKKIGPTTELQDDP
SKEEYYIPPPPPPPPSTTPTTGQYQLNVIQSSVGLPQPVPPTQQTHPECS
PPPQNLWNQPSNNSIPNYSYYPPTAPSFYSAPGTGPATQDLPPPPQFNNQ
SSEYNMYYPALSPSTGPSTFGPGGAMPPAQYLDYGKHCNVDDDDENRPVV
TLENKSLWQEFHEVGTEMIITKTGRRMFPPIKFRISNLEPKTKYILIMDI
IPADDCRYKFSRGAWLIAGKADPPMPKRMFIHPDGPNTGNQWMSKSISFN
KMKVTNCVQGKNGYPILNSMHKYQPRFHIAKVADFYKMNMSNLKTFVFRE
TEFLAVTAYQNEKVTKLKIKYNPFAKGFREDGAAGKRISRIENNESDGEE
EKSTSHQNKKTKFSPTPNELKGKHKLDESPESGISSLNSTPSKMRFKDTI
SPPTHISSYESHIKSRRFLSPTAMFTSSRDQFFSSRDFSPRDEFRYHYNP
AASPSPSPSFENYLPQNTSANSVLPMVLPGSIYSSGNPQNTVNTPGTEYN
NGASFHDHVGAGKSLKKQLQLNTELLSSTSSQWQNFGSYTTPTTNVGSPY
TQNNYFSSTPNYGRYGSTPLCRHGLAHCAVCSYSSSILNSANL
Run BLAST on NCBI

transcript from alignment at sc0000030:264251..274476-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003610 ID=TCONS_00003610|Name=TCONS_00003610|organism=Clytia hemisphaerica|type=transcript|length=10226bp|location=Sequence derived from alignment at sc0000030:264251..274476- (Clytia hemisphaerica)
CAGTGGATTCTTGGCTCCGGTGGATTGAGGTACTGTATGTTACTCTCTTT
TTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGAGGCCCAAAAAT
TTAAGAACATTCTAAGAACATTCTAAGGCTTTGGAGACTTAAAAACATGC
ATTCTCTTAAGATATTACATCAAAATGCTCAAAAAATGCTGAAAATAAGA
ACATTTTAAGAACATTTTTAGGCTTCAAATCCAAAAAACTAAGAACATCC
GACGGCTTCGAAAATTTTTGATGTTCTTATCAAAAAAACGTGTACGTACA
CTCTTTTTTTTATAAGAAACAGTAAATTCAAAAATATAATTCTGTAATTC
TGTAAATTAATTTCAAGATAAGAGTATTTTAGTCTCAAAATTATCAAAAA
ATATTATGTGCATCCAGCAAAAAAAAACACTTGTATTTATTCGCTTTTTA
GGAGATTAGTACTCAAGTGCCAAATAAACGGGGGGGTTCGAATAAACGGG
GGGGGGGCTGGAAAATTTTTGAGATTTTAATAAACGGGGGACCTAATTGC
CGGGGGGGTCGGAAATTGTACTTCTGAAAACCCAAAAGTAAGTTAAATAA
GGCTAAAATCAGGCTATTTAGAGCAATATAAGGGGCCTTCTCTTTGACAA
CTGAAAATGTTTTTAAAAATTAATAAGCGGGGGGTCCTAAATGTTAAGGT
CCGGGGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCAAGGGGGCCCAT
TTATTTGGCACCTAAGAGTATGATCCTTAATTTATTCATTCAAAATCTAT
TTATTTCAGTCCAAGGGTTACTGTACCTATTAGTAAATTTGTCTGTTTTT
TAGCCTCCAAAAAACTACTGTAGATCGGCAAAAATTTCCTCTGATAATTT
CGGTTCACTTTACTCTGAACGAGTTTCAAGTAAAAATATACTTTAGACCG
CTACAAAAAAGAATTTGAAAGAGAAATATTTAAAAGTTTTAATTGGCCAA
AAAAAAAATAGCAAAAAAAAAACAGAATTAGACAGAATCGCAAATTCTCT
CTGCGTTTCAATTTTTTCAAAGCGTTTATTGAGAGTTTTTGAGAGAAAAA
GAACGAAAATGAAAAAAAAATTGTTCGCTTCAATTCAACACAGTAACAAT
TCAACCAAAAATTATGCAATATGATTGGCTTACAGTATTATAAAATTCGA
CCAATCAGAGCGTTTGAAAATAACAACATAAACCAATATGGCTTTTTAAA
TCTTCCGACAAGAGAGAGATTCTCGTTGTTTTTTATATGATGCAAACAAT
GAAACAATAAAAATGTAATAATGTAATCATTTAGAACAATAACAGGCGAG
TCATTATATTTCTTTTGTTTTAAAAAAATATCTTTTTTTTTGCTATCCGT
GCTTTATGTTGAGCCTCTCTCGGGATATATTATTTTTTAAATGACCTATT
GGAGTTGATAGGTGATATCTCAGTCACTTTTCCATTCATTTAAAGAGTGT
TAAGCTTGTTAGCACGTTTGGTTTGATATTTTTCATATGGCTTATTTTTC
GTGGAATTTGAATTTTTTTTTATATCTGCTTGTTAAGTTATTTTTTTGTC
ACACTTTAGTCTAAGCTGTGAATAACTTTAATTAATTTGATTATCGTAAT
TTTTGTTGAGCCAAAAATGATTTTTAAGGGGGGAAGGAAAAATCATAACA
AAATATTCCAAAGTGTCTGTGTAGCAAGGAGATATACTATTCAATAACCC
ATCCAATCCCAAGCACTTCTTTAGACTTTGGACTCCCAAAATCTCATGTC
GAAATTCCTTACTTTTTGTCATCGACTCTATCAATTTATAAATTTTATGA
AGAACTAATGCTATTCTTAATTTACCATTAATATTACTAAATGTGTTAAA
TTGCGAAATTTTCCTTCCCACTTGCGTTAGAAGCATAATTTTTTTCCTCT
GACGTTTTTGACACTTTTATCAGCATTTCCTGATGCATTTCTAGTCCCCT
TACGTAAAATTGCACATCAATGGCTTCATTTTAATAAGCCTCTGTACCTA
TTTCATATTTAACTTGTTAAAATGTTATCACATAAAATTGCTTTCCTCAA
TTTTTATTATACCTTCGTTTTTCTTTGTTCTGAATTTTTCTTTTGTTATG
CTTATCGTGGTACAAAAAAAGATGCTGAATTTTACATTGTTTTCTTTTCT
TCTCTCTCTGTTTCTTTAATTTTGCTTATTGAGCCGAGGTGTGAAAATTT
CTCATACTTTGAGGCATACTTAAATGGCCTCGAACTGTCTTATCATCTGA
TCTATCTGATAGAAAGAGAGCGTGAAAAAAGCGTAAATTTTGATAACTAG
AGAGAGCGTTAAATTTATTTTCAGTTTCAGTGTTCTACATTAGCTAAAAA
ATCGAAAGGTTCTGCAACGAATAAGAGTGCGAAAACTAAGTGGCTAGCAA
AAGATAAAAATCTATTAACAAAATAATAATTATAATTCTTGGTGTCAATT
TCATCAGGGGTTTTGTGTGAAAATCAGAGGTGTCAAAATGGAGCCCAACT
ATGGTGAGAATTTTGAACAACAACAAAATAAATTTGAAGAAAAGAAAATC
GGACCTACTACAGAACTACAAGATGATCCTTCCAAGGAGGAATACTACAT
CCCACCACCACCACCACCACCACCATCAACGACCCCTACTACAGGCCAGT
ACCAACTGAATGTGATACAGTCATCAGTAGGCCTCCCACAGCCCGTTCCA
CCCACGCAACAGACCCATCCTGAATGCTCGCCTCCACCTCAAAATCTATG
GAACCAACCGTCAAACAACTCCATCCCAAACTATTCTTATTATCCACCTA
CCGCACCATCTTTTTACTCGGCACCTGGCACTGGACCTGCGACTCAAGAC
CTACCACCGCCACCGCAGTTCAATAACCAATCATCAGAATATAACATGTA
TTATCCAGGTACACTATTTTTTTAATAAGAACAAACTATATAAGAACATA
AGGCTTCGATGGAATATATGAATGTTAAGAACATGTTAAGAACATTTTTA
GGCCTAAAACTCAAAAAGTTAAGAACATCCTAAGGCTTCAAAAATTTTGG
ATGTTCTTGTAAAAAAAGTGTACCTGGATAATTGATTCTATCATTTTAGC
CTCAAATAGTTCTTTTTTAGTTTTTACCTTATTATTAATCGTCGCTTCGT
TTCATATTCCAACTCCTTTTCGTACATTTCTTAGTTATTTAGGGAAAAAA
ACGTGTAATGATACTGTTCCAGCCTTACTTTGTACTGACATTCACTTTTC
AACTGATTTCATTCTTTTTTGGAATATTATACCGAAAGTTAATTTTTTAA
TTTTTTTATATATCCAGCTTTGTCGCCATCAACTGGACCTTCAACTTTCG
GCCCCGGCGGTGCAATGCCACCAGCACAATATTTAGATTACGGTAAACAN
AGCTTTGTCGCCATCAACTGGACCTTCAACTTTCGGCCCCGGCGGTGCAA
TGCCACCAGCACAATATTTAGATTATGGTAAACACTGCAATGTTGACGAT
GATGATGAGAATCGACCTGTGGTGACGTTGGAGAATAAATCTTTATGGCA
AGAATTTCATGAAGTTGGTACAGAAATGATCATCACTAAAACTGGAAGGT
AGCTATTGCTTTTTTGAAAGAACATCCTAAACTTTTGAAGCCTTTAGATG
TTCTTAACTTTTGATTTTTCGGTCTAAAATTGTTCTTAATTTGACCATTT
TAAAAGTCTTTTTGTTTGCAATTTCCCAAGAAATCGGGTGTCTTAGAGTC
TGTAAAGCCTTAAAATATTCTTAACTTGTTCTTAATATTTTGGCCATCGA
AGCCTTATGTTCTTATGTAGTTTGTTCTTGTAAAAAACGTGTATACACTT
TGAGGTACCTATAAATTCGCAATTTATCTCCAGGATGGTAACGATAGAAT
CACGCTTTCTATTGAAATTAATAGAAATTTGCATTTCTTTTGTGAGAGAT
TATTAGTCATCTTTGTTTAGATAATGACATGAAAATTTGCTTTAAAAATC
AACATGTGTTTTCTATAGCGAAAGTGTGGTGTTTGTCTCGAGTGCTTTTA
GAAAGAAAATTTTCCTTCGATATGCTTTTTCATCTGAATCGTGAATAATT
ACCGATAATTATCTCTAAATTAATTANAATATGCTTTTTCATCTGAATCA
TGAATAATTACCGATAATTATCTCTGAATTAATTATTTTTATTGTTGTCT
GAAAAATTTTATTTAATCGCAACATGCCGTACATTAGATACGATCAGTTC
TTTTGGCTTTTTCTCTTATTTCTCTTTTCCAATTTTCCGCGAGGAGTTTA
AACTATCCGACAATAGGGACCGCTAAACGTGTTAAAGCTTTTGTCTTGGA
TACAGCAAATTGTTTTGATTGGAATTTCAAAGAAAAAACTTACTGCCAAG
AATTTTTCTAATGACAATTCAAAAAAATTTAAAAGATTGATTCTTTTTCG
AAAAAATATCTTCCTAAAATTAATTAAAAAAGGTTTTCCTTTAAATCATT
TTAAATCACTTGTGGGTTTTCTTTTAAAACTTCATTGTGAAATAAAAATG
ATTTTAAACCGTAAAAAATCCAACCTGTTCTTTAGAATTAAAAGATAAAA
GATTTCAAAAGAATTTTAACACTATTTTTATCTACTCAAATCCTATTGAC
TTAATTAATTGACTTAGAAATAAATCATACCATAGTGTTTATAAACTGTC
CTTAATCATGGTGATTTTAACTTGATTATTGTGATTGATATTAAATTGTT
TCAATAAAAAAGTATGATAAGAAAGAATGACTTGAGGGGGGGTTTTGGTC
GGATTAAGCACGAGGAAGTGTAATCTCTGTTCAATCGATCTTTCAGTTGT
CTTAATTACATCCCCTTCTCACAGACCCACTGGGACCTAGATTATTTTTA
TTATTTTTATATTAACCCGTATCTATTATTTTAACTCCCACTAGCTGAAA
AAGTCTTACCGGGTCTGTGAGAAGGGGATTTAATTGTTCTCAAAATCACC
GTTCTCGATGTTTTTTTTGTTTTTTTTTTGCTCGAAAGTTTTTTGTTCTT
GTATACTTTTTTCTTATAGGCCATTTCACAGTCGAAATGAATCATGGGTA
ATCATGACCACCGCGCTGTAATAACAACTTTCTGTTGGTCTAAATTTTTG
GATGTTTTTGGGTCCAGCCAACGGGAAGCCGTTATGGAGGTGCAATTAGT
CCTGATTACCCATGATTCATTTCGACTGTGAAGGAGAAACATTTGTGGTG
ACCGCAATCTTGATTGTATCTTTTCTAGGAGGATGTTTCCGCCCATAAAA
TTCCGTATATCAAACCTGGAACCTAAAACAAAATATATCCTCATCATGGA
CATCATTCCTGCTGATGATTGTCGTTATAAATTCAGCAGGGGAGCGTGGT
TAATTGCCGGAAAAGCCGACCCACCGATGCCTAAACGGATGTTTATTCAT
CCGGACGGACCGAACACCGGGAATCAGTGGATGTCGAAAAGTATTTCATT
CAATAAAATGAAAGTCACCAATTGTGTTCAAGGAAAGAATGGATATGTAA
GATTTCTCATTTTAATTCATTGTTCTTAAATCTAATAGGCCTTTCCATAA
ATTATTTAAAGTTCAACGACTACCTCGTTTTGAAACCATTACCAAGGTGA
TTAATTCCCTTGAGTCTTCAAATGATACCTTTATGAATAAAGTGAAATTC
TTATGGACTTCTCTTGGAATCAATAACCATAGCAATATTTTGAAAACGAG
GTAAGCGTTGCTCGTGACGTAATTTATGAAAAGGTCTATTGTTAAAAACT
AGTTTTTCATGGAGGCAGATTTTCTTATGACATCATTTTAACCCGCGATA
GCTGACTGTGCCATTTTATTCTTACTAGCCTATCTATAGCTTTGGTTGAA
AAATTCTCACTATACAGCTAGATAATGCTATGCTGATCTTTCCTGTGAAG
AATACATATATTATTTCCCAAGAGTATTCCTTTAGCTGAAATAATTCTCA
CAGATAATTCTCACAGATGTTTTCATTGTTCACGTTTAAGAATGAAAATT
TTAAAGTTTTTCTGTCGATTAACATTTTACTTCCGTCACAGTGTGTACAA
CAAATTCTTCATGTGACGTTTGTTTTCGATATCTGAAACTGTAAATTATG
GTGTAAAGAAAAGCTTTCAGCATTTTAAGTTTATCTAACAAAATCAGAAA
CCATGGATCAATCGCAGGCGTCGAAAAGTGAAAAATCATTTGCCTCAATT
TGCCTATAAAAATACAAAATGTGTCCCAGAAAAAACGGACTAGACAATTT
TTTGCATAAAGTAAAATCCTCAAAAAATGATTGAAATAAGATTTAAAATT
CTCTGTTCAAGTTCAATCAAAAGATATCCTCAAGATGATTAAATAGGTTT
TTGAGATATTAAGTATACAAGTCGTAAAATTTCGCGGAGGATTTTATTTT
CGATTAAAATTTGTCCGCTTTTTTCGGACACTCTGTAGATTTATGTTTCA
ATTTTTCAGTTTTAAAATCAGAATTCAACTTAACCCAGTTCCTTTTCTCT
TCTTTTTTCAGCCTATTTTGAATTCCATGCATAAATATCAACCTCGTTTC
CATATCGCGAAAGTTGCAGACTTCTATAAAATGAACATGTCCAATCTGAA
GACCTTTGTTTTCCGAGAAACCGAATTTTTGGCTGTCACAGCCTACCAGA
ACGAAAAGGTTTGAATAGATTCTCTGTTATTTTACTTGTACCGTCGAGTA
TGTATTATATACACTTCTTTTTCTTATAAGAACAATGAGCCTCTAAATCG
CCAAAAAATAGAAATTTAAACAATTTAGAGATCAAAGTAGTAAAGATTTG
GTATAAAGCCTAAAATATCTCAATCACACCCTATAACTAAGAACAGGATA
AGAACAATTTAAGGCTCAAAGTGCCAAATATGAGAACAACCGAGCCTCAT
CAAAAATCTACCAGTTCTAATAAAAAAAGTGTTTATCAAACTGTGAATCA
AACTGTGTTATCAAACAGTTTATTCTTTTTTTATAAGAACCAGTAAATTT
TTGTTTCTATCATGTTCGCTTATTTCTAGGCGAAACACCTTGTCTGATCC
TTTTGTATAAAATTTAGCTAGAATTGTTCTTATTTTTTGGTACATTTTGC
CCTCATCATCCTGATAAGAATATTATTGTAAAAATAAATATTTTAAATCT
TACGGGTTATAAAGAGTAAAAGAGCCTACACGTTCTTTTTATAAGAACAT
CCAAAATTTTTGAAGCCTTCGGATGTTCTTAACATTTTGAGTTTTAAGCC
TAAAAATGTTCTTAACATATTCTTATTTATACTATTTTGTGAGTATTTTT
AACCATTTTTTTAAGAAATCGGGTGTTTTTAGTTGTTGATCTTAATATTT
TGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTAAAAGAACGTG
TACTCAAAATAGATTAAAAAATGAGGTTTTCCCTTGCCAAAGTAAAAGAG
CCTTTAATTCTTTCAAAACAATATGAAGAAACTGTACGTAAGAACATTTT
TGATAACACTTCCCTTCAGGTGACAAAACTGAAGATCAAATACAATCCAT
TCGCCAAAGGTTTCCGTGAGGATGGAGCTGCTGGTAAACGTATTTCAAGG
TATCTATCTAACTTTGTTTTGAAGTTTTTAGTTTTACATAAGTGTTCCTG
TTGCATATCAGATACATGTTTTATATCATTGCGGTGTCTCCTATTGTTAT
ATTGTGTTCGATTTTGTGCTGAATAAACCAATATTGCTCCACAATGTGAG
AAAGATTGAAGTTTAAATTGATGACTAAGCAAATGATATCAACTTTGATC
AGTATACATATATTTTAAATCACTTTTCTTCAGAATCGAGAATAACGAGA
GTGATGGTGAAGAAGAAAAATCAACTTCGCATCAAAACAAGAAAACCAAA
TTCTCACCAACACCCAATGAACTAAAAGGAAAACACAAATTAGACGGTAT
GTATGCCTAATATTTTCATTTAGAGGATTACCACATGAAAAGTCCCTGAA
AATTGTTGAAATTTGTAAAGCAAAAATAACAACGTTGGTTATTCATAATA
TTCATTACTTTCATTACTTATTATTCGACGGAAAGGCCCACATCATGAAA
TTGAAAGTGGGGGGGGGGGCAATGAATATAAAGTCTATTGAGGTGCAACC
AAGAATTTTCAGATTGCAAAAAATTAGCTTATTTTACCATATTTTATCTC
TATAGAATCACCAGAATCTGGAATTTCCAGTTTAAATTCAACTCCAAGCA
AGATGCGTTTCAAAGACACAATTTCACCTCCAACACATATATCGTCTTAC
GAAAGTCACATCAAATCACGACGTTTCCTTTCCCCGACAGCCATGTTTAC
TTCATCACGTGATCAATTCTTCTCATCACGTGATTTTTCACCACGTGATG
AGTTCCGATATCATTATAACCCGGCCGCATCGCCTTCCCCATCCCCGAGT
TTCGAAAATTATCTCCCACAAAACACTTCAGCGAATTCAGTATTACCAAT
GGTCCTACCCGGATCTATTTATTCGTCCGGAAATCCTCAAAATACAGTGA
ATACACCCGGTACTGAATATAATAACGGGGCGAGTTTCCACGATCACGTA
GGAGCAGGAAAATCGCTTAAAAAACAATTACAACTCAATACGGAACTTTT
ATCGAGTACTTCTTCTCAATGGCAGAATTTTGGCAGTTATACCACACCAA
CTACCAATGTCGGATCACCTTATACACAAAACAATTATTTTTCATCGACC
CCCAATTACGGACGGTATGGAAGCACCCCTCTTTGTAGACACGGGCTGGC
GCATTGTGCAGTTTGCTCATATAGTAGCTCTATTTTAAATTCAGCTAATT
TATAATGATTATTTTTGTTTCATTTCGATTTTCGTCTTTTTTGTTGTTGT
GAATATTTTTCATTTTTGAATTTTTTGTAAAAAGAAACTTTTAAAAAGAG
AGGCCAGAAATAGGACAAACACGTTTTTTTATAAGAACATCCAAAATCTT
TGAAGCCTTGGGATGTTCTTAACTTTTTGAGATTCAAGCCTAAAAATGTT
AATTAACATATTCTTATTTTCGCCATTTTTTGAGTGTTTTTGTCTATTTC
CCTAAGAAATTCAGTATTTTAGAGTCCGCAAAGCCCTAAAATGTTCTTAA
CTTGTTCTTAACATTTTGGTCATCGAAATCTTAAGTTTTTATATAGTTTG
TTCTTATAAAAAACCGTGTAGTAGTAATTTGCAACTTGGCGACGCTAGTC
TTAAGTTATGTTTCAAAGACTTTAACTTGTAAGCTTTTTCAATACTGTGA
AAAAGTCCTGTAAAAGTCGATGCCTCTTGTTGTTAGAATTTGCTGATGAA
CTTTGCAAAGAATATTTGCTAATAGCAAAGTTAAGTGTAAATAGGGAGTT
AATGTATCAGAGGATTTCGAGGGCAACGATAAAGTGAAGTCGATGCAAAA
CAAAGTCGATAGTTGATGTACGGCTCTATATCGCCGTTGCTCACCTAAAC
AGATGACGGTATTTTGGGTTTTTTACCTTCGTGAGGACGGCGATTTTGGT
GACATGTCAACTTTGCTTTATATCGTCTCCTTCGATTTACATAACTTTGC
TAATAGATAAATCACGAACGAGGACGGACGAATTTCCACTAGCCTTTATT
CACAGTAAGGAACTTTTTCTACAGGCTAAGTACAAAGCAAGATAGACTTA
CCTCGCGTAGTATATCCGCTTTGTAATTTTTCTATCGATACTTTAACATC
GCCAATCTAATGTTTTTAAAGGAGAGCGAATACAAGTGAGATAAATTCTG
TTATGAAATATGTACCAAAACCATGATAAATAAAGTCTTAACGAAATAAG
CTTGCGTCAATTTTTTTTGTTGCGTTCTCATTGTATGACTTCATTTTTAA
TGTTATTTTTAATTGAACTTTAATTTACTTTAAATCTTTTGTTCATAATT
TATTTCAAAATATACGATAATTTTATTTTTTATTTATCCATTTTGTGACC
TTTTGGGCACCTTTTTTTATTAAATACAATTTTAAAATTTACATATCACT
ACAAATTGAGCTGTATATTATATCTTTAAAATTTTCAATAAAATCGTTTT
TCTGAAATATTTCAATTAAATTGTAC

Coding sequence (CDS) from alignment at sc0000030:264251..274476-

>TCONS_00003610 ID=TCONS_00003610|Name=TCONS_00003610|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at sc0000030:264251..274476- (Clytia hemisphaerica)
GTGGATTCTTGGCTCCGGTGGATTGAGGGGTTTTGTGTGAAAATCAGAGG
TGTCAAAATGGAGCCCAACTATGGTGAGAATTTTGAACAACAACAAAATA
AATTTGAAGAAAAGAAAATCGGACCTACTACAGAACTACAAGATGATCCT
TCCAAGGAGGAATACTACATCCCACCACCACCACCACCACCACCATCAAC
GACCCCTACTACAGGCCAGTACCAACTGAATGTGATACAGTCATCAGTAG
GCCTCCCACAGCCCGTTCCACCCACGCAACAGACCCATCCTGAATGCTCG
CCTCCACCTCAAAATCTATGGAACCAACCGTCAAACAACTCCATCCCAAA
CTATTCTTATTATCCACCTACCGCACCATCTTTTTACTCGGCACCTGGCA
CTGGACCTGCGACTCAAGACCTACCACCGCCACCGCAGTTCAATAACCAA
TCATCAGAATATAACATGTATTATCCAGCTTTGTCGCCATCAACTGGACC
TTCAACTTTCGGCCCCGGCGGTGCAATGCCACCAGCACAATATTTAGATT
ACGGTAAACACTGCAATGTTGACGATGATGATGAGAATCGACCTGTGGTG
ACGTTGGAGAATAAATCTTTATGGCAAGAATTTCATGAAGTTGGTACAGA
AATGATCATCACTAAAACTGGAAGGAGGATGTTTCCGCCCATAAAATTCC
GTATATCAAACCTGGAACCTAAAACAAAATATATCCTCATCATGGACATC
ATTCCTGCTGATGATTGTCGTTATAAATTCAGCAGGGGAGCGTGGTTAAT
TGCCGGAAAAGCCGACCCACCGATGCCTAAACGGATGTTTATTCATCCGG
ACGGACCGAACACCGGGAATCAGTGGATGTCGAAAAGTATTTCATTCAAT
AAAATGAAAGTCACCAATTGTGTTCAAGGAAAGAATGGATATCCTATTTT
GAATTCCATGCATAAATATCAACCTCGTTTCCATATCGCGAAAGTTGCAG
ACTTCTATAAAATGAACATGTCCAATCTGAAGACCTTTGTTTTCCGAGAA
ACCGAATTTTTGGCTGTCACAGCCTACCAGAACGAAAAGGTGACAAAACT
GAAGATCAAATACAATCCATTCGCCAAAGGTTTCCGTGAGGATGGAGCTG
CTGGTAAACGTATTTCAAGAATCGAGAATAACGAGAGTGATGGTGAAGAA
GAAAAATCAACTTCGCATCAAAACAAGAAAACCAAATTCTCACCAACACC
CAATGAACTAAAAGGAAAACACAAATTAGACGAATCACCAGAATCTGGAA
TTTCCAGTTTAAATTCAACTCCAAGCAAGATGCGTTTCAAAGACACAATT
TCACCTCCAACACATATATCGTCTTACGAAAGTCACATCAAATCACGACG
TTTCCTTTCCCCGACAGCCATGTTTACTTCATCACGTGATCAATTCTTCT
CATCACGTGATTTTTCACCACGTGATGAGTTCCGATATCATTATAACCCG
GCCGCATCGCCTTCCCCATCCCCGAGTTTCGAAAATTATCTCCCACAAAA
CACTTCAGCGAATTCAGTATTACCAATGGTCCTACCCGGATCTATTTATT
CGTCCGGAAATCCTCAAAATACAGTGAATACACCCGGTACTGAATATAAT
AACGGGGCGAGTTTCCACGATCACGTAGGAGCAGGAAAATCGCTTAAAAA
ACAATTACAACTCAATACGGAACTTTTATCGAGTACTTCTTCTCAATGGC
AGAATTTTGGCAGTTATACCACACCAACTACCAATGTCGGATCACCTTAT
ACACAAAACAATTATTTTTCATCGACCCCCAATTACGGACGGTATGGAAG
CACCCCTCTTTGTAGACACGGGCTGGCGCATTGTGCAGTTTGCTCATATA
GTAGCTCTATTTTAAATTCAGCTAATTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002012XLOC_002012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003610-exon-sc0000030-1575043694:274448..274476TCONS_00003610-exon-sc0000030-1575043694:274448..274476Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:271519..271969TCONS_00003610-exon-sc0000030-1575043694:271519..271969Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:271029..271109TCONS_00003610-exon-sc0000030-1575043694:271029..271109Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:270829..270943TCONS_00003610-exon-sc0000030-1575043694:270829..270943Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:268881..269148TCONS_00003610-exon-sc0000030-1575043694:268881..269148Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:267719..267865TCONS_00003610-exon-sc0000030-1575043694:267719..267865Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:266778..266857TCONS_00003610-exon-sc0000030-1575043694:266778..266857Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:266431..266543TCONS_00003610-exon-sc0000030-1575043694:266431..266543Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1575043694:264251..266171TCONS_00003610-exon-sc0000030-1575043694:264251..266171Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:274448..274476TCONS_00003610-exon-sc0000030-1510915933:274448..274476Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:271519..271969TCONS_00003610-exon-sc0000030-1510915933:271519..271969Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:271029..271109TCONS_00003610-exon-sc0000030-1510915933:271029..271109Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:270829..270943TCONS_00003610-exon-sc0000030-1510915933:270829..270943Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:268881..269148TCONS_00003610-exon-sc0000030-1510915933:268881..269148Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:267719..267865TCONS_00003610-exon-sc0000030-1510915933:267719..267865Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:266778..266857TCONS_00003610-exon-sc0000030-1510915933:266778..266857Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:266431..266543TCONS_00003610-exon-sc0000030-1510915933:266431..266543Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1510915933:264251..266171TCONS_00003610-exon-sc0000030-1510915933:264251..266171Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:274448..274476TCONS_00003610-exon-sc0000030-1491911889:274448..274476Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:271519..271969TCONS_00003610-exon-sc0000030-1491911889:271519..271969Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:271029..271109TCONS_00003610-exon-sc0000030-1491911889:271029..271109Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:270829..270943TCONS_00003610-exon-sc0000030-1491911889:270829..270943Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:268881..269148TCONS_00003610-exon-sc0000030-1491911889:268881..269148Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:267719..267865TCONS_00003610-exon-sc0000030-1491911889:267719..267865Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:266778..266857TCONS_00003610-exon-sc0000030-1491911889:266778..266857Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:266431..266543TCONS_00003610-exon-sc0000030-1491911889:266431..266543Clytia hemisphaericaexon
TCONS_00003610-exon-sc0000030-1491911889:264251..266171TCONS_00003610-exon-sc0000030-1491911889:264251..266171Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
T-box transcription factor 2-3TCONS_00003610-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:264251..274476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.24744	2.632	5.23992	6.77219	31.2823	4.86418	18.3602	28.3814	5.63751	11.8239	10.2497	7.73713	0.43837	0.657729	0.297929	0	0.077038	0.241908	0.334935	0.350837	0	0	1.26386	1.42232	0	0	0.309789	0.347406	0.180007	1.40978
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00003610 vs. Swiss-Prot (Human)
Match: TBX2 (T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 4.645e-83
Identity = 128/214 (59.81%), Postives = 164/214 (76.64%), Query Frame = 3 
Query:  531 PPAQYLDYGKHCNVDDDDENRPVVTLENKSLWQEFHEVGTEMIITKTGRRMFPPIKFRISNLEPKTKYILIMDIIPADDCRYKFSRGAWLIAGKADPPMPKRMFIHPDGPNTGNQWMSKSISFNKMKVTNCVQGKNGYPILNSMHKYQPRFHIAKVADFYKMNMSNLKTFVFRETEFLAVTAYQNEKVTKLKIKYNPFAKGFREDGAAGKRISR 1172
            PPA +L   K    +D+ E+ P VTLE K LW +FH++GTEM+ITK+GRRMFPP K R+S L+ K KYIL+MDI+ ADDCRYKF    W++AGKADP MPKRM+IHPD P TG QWM+K ++F+K+K+TN +  K+G+ ILNSMHKYQPRFHI +  D  K+  S  +T+VF ET+F+AVTAYQN+K+T+LKI  NPFAKGFR+ G  G+R  R
Sbjct:   84 PPAAHLRSLKSLEPEDEVEDDPKVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTG-NGRREKR 296
The following BLAST results are available for this feature:
BLAST of TCONS_00003610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBX24.645e-8359.81T-box transcription factor TBX2 OS=Homo sapiens GN... [more]
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