TCONS_00003624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003624
Unique NameTCONS_00003624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003624 ID=TCONS_00003624|Name=TCONS_00003624|organism=Clytia hemisphaerica|type=transcript|length=1557bp
TCAAGAAAAGCCTCTTCAGCCTCTGTGGCTGAGTGGAAGACTGAAAATCA
CACATGACATGAAGATGAGTAAcaacaagaagaaaaacaatGCAAGTCTT
ATGCATAAGGAGCAAGAATTCAAggATTTGAATGCAGCACTTGAAGAAAA
AACAGCTTCATTAATTAATGACGTAGAGTCTGTGTTGCGTGGacaagaat
tatttttcaatgacCTTCATTCAACAGAAAAAGATCTCAGTGATATGTCA
CTTGGAACTCAGAGCATCGATGGAACAGAAGCGAATACAACAGAAGACTC
TCTACGAAAACCGCCAGCCAAAAAGAAACTGTCTGTCAAGAAGaGACCTC
TATCTGGGCCAGTGACTGGTgcaaaaaagagagaaatgaaacaaaatggc
agACCGAAGACTTCAATCAACACTATTCATGGAAAAGAAACATCACCTTT
AAACTTGGTTTCTGATCGAGCAGCTTTCGCAGACCGCATCAATACGTTAG
AGATGGAAGCTGCAGATGACCTGTACACACCTTCCCATTTGAATGAAGGA
GTACTTCCAGAAGCTGCTAATGAGCTAAGTAGTGATGCCACAATCAGGTT
TTTGAAAGCCAAATTACGTGTCATGCAAGAAGAGCTTGAGAATGTTGCCA
ATGAATGCAGACAAAAGGCAAGCAAGGTAACTGAACTTCAAAGCGAGATG
AAAGAATCAAATATGCAACAAACAAACTTATTGAAGAAGAACGAACAACT
ACAGAAGACGATTGAGAAACAGAAGAAACTTCAAACAGACTTACAAACTA
AAAATTCAGACTTGGAATCAGATGTGACGTCTTTGAAAAAGGAGCTGGAT
GGTACCAAACGTTCAAATAAACAATCTTCCGCAAACAGAAACACACTTGA
AGTCAGGTTGAATCGTGCATTGGAAGAAGTTGAAAAGTATAAACAAGCTC
TGAAAAAATCCAAAGAGTCGACAAAGGCTGTGAACGATACTGACAGAAAA
TGTTTGGACCaattacaaaatgaaaataaacgtTTGGAGTCACAAAAGAA
CGACCTCATGATCGCAttcaaaaaacaattgaaacttATTGACATTTTGA
AACGACAAAAGatGCATATCGAAGCAGCAAAGATGTTGGAATTCACTGAA
GAAGAATTTATTCGAGCTCTCGATTGGAATAATACCACGTGATAGGACCT
TTCCCATAGAAAGATTATGTTTTATCTCTTTTTATCAATAACTTgaggtt
tttcttttatttaaccTTAAATCCTTCTAGCATCTTCTAGGGGGAAGCAT
CTTGGCGGGGGAGGGAGGCAAGATCGACAAGTGATATGACCGTGAAGGGT
TAACACTTGCAACAGTCGTGATGTAAAACTTGTCAGAAAAGGACAGGGTC
ACTGGTCACTGCATGTCTcacttcttttcttttaaaaccGATAATTCAAG
AGGAAAATTGTACATTTTGTTAATTTCTAGAGATtttatttgtgaatatt
ttttttttcaatgtgtaAAAGGATGATGTAAATTTAATGGAAACTTCTAA
ACAGGGT
Run BLAST on NCBI

protein sequence of TCONS_00003624-protein

>TCONS_00003624-protein ID=TCONS_00003624-protein|Name=TCONS_00003624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
QEKPLQPLWLSGRLKITHDMKMSNNKKKNNASLMHKEQEFKDLNAALEEK
TASLINDVESVLRGQELFFNDLHSTEKDLSDMSLGTQSIDGTEANTTEDS
LRKPPAKKKLSVKKRPLSGPVTGAKKREMKQNGRPKTSINTIHGKETSPL
NLVSDRAAFADRINTLEMEAADDLYTPSHLNEGVLPEAANELSSDATIRF
LKAKLRVMQEELENVANECRQKASKVTELQSEMKESNMQQTNLLKKNEQL
QKTIEKQKKLQTDLQTKNSDLESDVTSLKKELDGTKRSNKQSSANRNTLE
VRLNRALEEVEKYKQALKKSKESTKAVNDTDRKCLDQLQNENKRLESQKN
DLMIAFKKQLKLIDILKRQKMHIEAAKMLEFTEEEFIRALDWNNTT
Run BLAST on NCBI

transcript from alignment at sc0000030:345020..358756-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003624 ID=TCONS_00003624|Name=TCONS_00003624|organism=Clytia hemisphaerica|type=transcript|length=13737bp|location=Sequence derived from alignment at sc0000030:345020..358756- (Clytia hemisphaerica)
TCAAGAAAAGCCTCTTCAGCCTCTGTGGCTGAGTGGAAGACTGAAAATCA CACATGACATGGTATGAAATGATAGTTATAAAAAAGCTCAATACTTTAAA TGATTTTTATTATTTAATTTACTGCAAAGTTCGGACACCCACTCTTTCTT AAGGGGGATCGTTTAAGAAGGGGGGGCTTACATATATTGTAAATTATTTT CCAGCACTGTTGTGAAATTTGGTCTGCATGAAAGGAAGTTTGAGTAGTCT GAGTCCTTTTTACCATAAACAAATAGAGAAAAAAAACAAGGGGATTGATT TTTAGAAGGGGGTAGCAGCGAGAAGGGGATTATCGGACCGCACTATGCAC TATATATTTTCGAAAATTTAGCCCAAACCCTCGGGGGATAGGCATTTTTA AAGGTTGTGGGGGATGCCAAAAAGGGGGGGATCATTATTTTAACAAGGGG GAATCAGACCACTTTCCGCACTATGACTTTATTTAAGATCTAATGGCTAA TCTTTATACATTCACTCAACTTCTGGTTCCCTTGAATGGGCCTTTTTAAA AATAGAATCAAAATTTAAATTTGCATAACGTTGTCCTCAAGCTGAAGAAA ACTTTGCACTTTTCCATTTACCCTTATACATTGAGATATTCACTAAAAAA ACAATGATGAAGCCATGGATGAGAGGGCTAAAAACTTTCCCTGACTCTAC CTGCCTTTATAAATTTTTCTTGAATTCTAGAGAAAATAAATAATTCAAAA ATATTATTGATAACAACTGTTACTACTAGAAGATGAGTAACAACAAGAAG AAAAACAATGCAAGTCTTATGCATAAGGAGCAAGAATTCAAGTAAGTTAA TATCAAAATATTATTATATATAAATTGATATAAAACCACTGACCATTTTG GAATTTTTAAACTGTCCTATTATTATTTGACATCATTTCCTGATAAAATA ACACATTTATTGTAAAGAATGGATTTTTTGTGAAACTCGAGCAAAAAGAG TGGCCCTCTGCAAGGATCTCCCTGCTTATCTAAAGTACAAGCTGAGCCAG TTTGCTCCAATTTTTATCACCTTCCATCAATTTCCTTTTAAGAGTACTAA AGCCATGAAGACTCAGTTATTGTGAACTGACTTGATAGCTGAAGCTTTTT TTAATAGTACTGTACAAACTTTTAAAAATTGTTTGAGAGGGTCAATAATT TGTTTAATTTTTTTTCTAGGGATTTGAATGCAGCACTTGAAGAAAAAACA GCTTCATTAATTAATGACGTAGAGTCTGTGTTGGTAGGGTATAATGAGTC GCTTGAAAGCAAGAAAGCCTTTAGCCAATTTTTTCAATTTGTGATAAAGT CCAGAAAAAAAGCTGTACGTCACAAAATTGACTTACATCTCTTTTGATCC AAATCTTTTCCAAACAAACTACTGACAGGCTTAGCAATCCTAGACAAAAT TCAGCAAAATTCCAAAAGTATTTTGACTTTAATGGCTTTCTTTCTTCATA TTTATAATTCTATTATTTTTGAGCGAAAATTTTGCTTTGATGTAAAGTCT TTTTTCGAAAAAACTTAGGGCTTGACTTAGGGCTTTCTTGCTTTTAAAGC AAGGAAAAGTTCTTTCTATTTTTTTAAAGCTGAACCATTTCATCAGTAAT ATTTTACTGTTATTATTATAATTTGATGGCAATCTCTGGTCCTTTTTATC TATTGATTATTACTATTATGTATTACTACTGATAAATAATGTTCAAATTT ATATAACTTACCTTAAAATTCTTGTACACCATAGCATCCTCGAGGCATAT TTAACACAATTGAGGGCTCATTTCATGAAAAGGATGCTGAGATGAGAATT CTACTTATTCTGAAAGATAATCATCTCTTAATATGTGCATTTGGATTATA TAACAATGGCCTCCTTGCTCTTGGTGCTTCTTTATTTGTACAAGAAACTG GAGCAGTATTCTATGAGGCCCCCTCAGGAGACCTTCAATTCACGCAATCA TGCATTTTTTTTTCCCAAATTCACGCATTCACGCAATGTTTTTTCACAAT TCACGCATTTTTTGTTCACTCAAAGCTTTCCAATTCACGCATTCACGCAA TGTTTTTTTAATGTTCACGCATTCATGCAAGTGAAAAAGCTCATTCACTC ATTCACGCAAACCTCTGGGGGCCCCGTCTATGCAAAGATAAAAGGCTTCT GTCATTGTTTGTTGGTATAGGATTTATATTTCAAGGAATTATGAAGGATA ATGAATAATTATATTAAGTTTTTCAAATTATTTAGTTTTCTCAGTTTTAT TTATGGAGATATTTTTTTCTTCATATATCTAGCGTGGACAAGAATTATTT TTCAATGACCTTCATTCAACAGAAAAAGATCTCAGGTATAATATATCTGA TTTCAAGAATATTTTTCATGTTTTAAAAGTCATTTTATAACAATCAGTTC ATTATGTTTATTTTATCGAGATTCTTTGACATTAGAAATTTTATACTGCT TTTTCTTTCTTCTCTTTAGTGATATGTCACTTGGAACTCAGAGCATCGAT GGAACAGAAGCGAATACAACAGAAGACTCTCTACGAAAACCGCCAGCCAA AAAGAAACTGTCTGTCAAGAAGGTATGAATTAGTAGTATCTAAAAACAGG ACAAGTAAAATCTTTACAAGCTGTTATTTGATTTGGTTGTTAACCTGTAA TAAAACAATTTTATTGCTCCTCCAAAGATTTAAAGAGATCATTCAGTATC ATATAAAAACTCCAACTCATTCAACATGAGAATTATTTGATCATACTTGG GATTTTACTATTTCATAATTTTATTTGCGTAAGGGATCTGTCAGAAAAGA ATTTTCATACCCTAAAAACTTGGCCTCCCTCAACTGCTTTTTTTCACCCA AAAAAAATTACTTAAAGTATTTGCTGGTTTACTTGATATTTGCTTTTTGT GGCATTTTTATAGTCAATCGAAAAATAATTTTATAGAGACCTCTATCTGG GCCAGTGACTGGTGCAAAAAAGAGAGAAATGAAACAAAATGGCAGGTAAA ATACTTTTAAAACAGATCTTGGTCATAATCATGAATTAAGTAAAATTTGC AATAATACAATTTGCAAGACAGCAATTGAGGATCTTTCTCATCAGTTTAC TTTGCCTGGGTTTAAAGTCCTTTATTCATGATATGCACCATTGCAATGTC TTCTACGGACCCAACAGCTGATTGGTTGTAAGTGACGTATCGACTGATTT AACGTCGCTTACAATCAATCAGCTGTTGGATCCGTGATGTAATTTCAGAA GACATTACAACGGTGCATATTATGAATTAATAAAGGTGATTCATTCTCTT TTTCGTTAACATCATTGTTTTTCTTTTCCCTATTTCTGACCAATCTTGCT CCACATCCGTGTCAATTTAATATCAAAAAGCTTGTAAATTAAAATTGATG AGTAAGCTCTTTTTTAAAAACAAAACCTTTTAACATCTTCTAGACCGAAG ACTTCAATCAACACTATTCATGGAAAAGAAACATCACCTTTAAACTTGGT TTCTGATCGAGCAGCTTTCGCAGACCGCATCAATACGTTAGAGATGGAAG CTGCAGATGACCTGTACACACCTTCCCATTTGAATGAAGGAGTACTTCCA GAAGCTGCTAATGAGCTAAGTAGTGGTAAGACTGGGTCTAATAAACAAAC TTTCTTTATAGTATAAAAATAATATGAAAACTTGATAATGGGTGACATTG CTGCCAAAGGAAAACCCAAAATTGTTCTAGTTTTTTTAAGTTATTGAAAG ATATTTCCTTGGGTCAATAATTTAATGGTGAAAAGAATAACCATAGAAGC GTCATGTTTTTATTTTAAAACTGTATATTCGACTTTCACTACAAGCGGCC ATCATCAGAGTGTAACAATTCTACCAACAAAGAAAAAAAATCTAAAAAAT TGTTGGCTATTATTTTAATTTAATGTTTAATTTGGAAAAAAGGACGATTT TTAGACCATGGGCACATTTAAACTAAAAAATGTATCTTTGTGCGATTTAT TCATGTTCACATTCTCAGATTCATTTTTAATTAATTTTCAGATGCCACAA TCAGGTTTTTGAAAGCCAAATTACGTGTCATGCAAGAAGAGCTTGAGAAT GTTGCCAATGAATGCAGACAAAAGGTACAGGTGGTGAAAGTAGAATCTAT ATTTCTAAATAATTTCTATATTTCTATAGAGACCATGAAACTCTGAGTTT GAAACTTAGATATTGTGTCAACTCTTTATTATATATTTCTATATATTTAT TTGCATAAATTCATTATAATTACTTTCGCAAATATTTAACAAAAAATGCT ATGAAATATAAAAAGGTTAAGCCTATAAATATATAATACATTGTTAAAAT AAGCTGGGTAAAGGGGAAAGATACACGCTTTTTTTTTATAAGAATGGTGT TTTTTCATTTCATGATACGATAGATATTCTTAACTTTTTGGCGAAAATAT CCAAAAATATTCTTACCGTATTCTTAGGTTAAGATCGAAATTGCCAATCT ACAGGTTAAAATGCATTAAAAATGGCATTCTTAGGTTCAGTTGTTAAATT CCATGATGGTGATATTCTTACCATATTCTTAATTTTTTGGCCATTTTCAT CATGGACATTCTTTTAAAGTGTATTCTTATACAAAAAAAAGCGTGTAAGC TTAGGATCGAGGCTTAGCATACAGTATCAGAAAGTATAAATGATTCTCAT GAAAAGAAGTTTCTTATTTCTGTAAAACTACAAAATTGAATATAGACCAC ACACAAACACGCAAAAATTTGAGACCCCTGTCCCATATCTTACTACATTG CTCTTAAAATTGAATCATCTCCCATTGGTATTCAAGAAATAGTAAAGTAA CCTATAAAATTGTTTCACTGCTTTTTATGCTCTTTCTAATTATAAATTTT ATTTCCTTGAGACTTATTTCATTTATCCCTTGATTTTAAGCAGATCTTTC TCTTCTTATTAGTTAGAAGACTTCGGCTCAGTTTCTTTTGTGTTAAGGTT TTTACTTTATAAGAATTTAGCCTGAGAATCATCTTTTCTATTGCGGTTTT CAGGCAAGCAAGGTAACTGAACTTCAAAGCGAGATGAAAGAATCAAATAT GCAACAAACAAACTTATTGAAGAAGAACGAACAACTACAGGTTTCTAAGC TTGATTTTAAATACCTACCTATTTTATGCCAAATTTTTATTTAGTTTAAC TTTAGACTAGAGTCTACTTCTGACTGAAATTTGTTTTCTGATGATCTTGA TGGTGCTGAGTCCAGTGAAGTAGACTAGAGGATTTTGCCATCTTGAATTT TTTCACTTTCGTTTTCGAAAATTATATGAAAGTATCAGCGCCATCCAGTC TATCAAAAAGCTATCTGGTTAACTTCACAGGTCTACTGATATCTACAAAT TTTTAAGACACTGATATATTAAACCCTTCGTGCAACTTTGATGAAGATCT CGGCATCATTGAAGAACTTCATTATCGAGAGATAAAATCACGATGCCAAA AATAGAATCCTCACTTTTTCCAAATTTCATATTTTTTGATCAAAGTTTGT GTAGGGGCAATTAATTTTGCTATCTTGTAATTTTTCCTACCCAATAATGC CTTATTTGCCCAAATCAGGTTTCTATATCTCAGGATTGGAAAATATTTCA CCAGTGTTAGGTATTGATAATGAAAACCATGATTCAAAAAGTCAAAAAAA TTCAGCTAAATCAGACCAGCCCTTGCTAAATACAAATTTCAATCACTTTG TGATTTTAGCCGAATTCAATTTTATCTGTATATAATACACCAATGAGACA TTTGGCTAAACTGAAATTTTCAAGGTAATTTGACAATCTTAACGGTTGAT GCAGTCGAAAGTGCTTTCCCTACTAAAATATAGGAAGATACAAAAAGAGC TAGTGCACAAAAATTACAAAGAAAATTATCAAAAAGTGATGATTTTCATA AACATATATTTTCATTGAAATTAGTAGATCACCATATGTGAAAATTTTGC CTAAATTCAATCTCCTGTCTCTTTTTTTATGCACAGAAAACGATTGAGAA ACAGAAGAAACTTCAAACAGACTTACAAACTAAAAATTCAGACTTGGAAT CAGATGTCACGTCTTTGAAAAAGGTAAAAGATTGTTTTAGTATACTCGAA CCAGGCTTAAAGTTTCAGGAAATTTGAACGTTGTCTTTTGGGCTGAACAG GACAGGATGAACATTAGGGTAATGGCAGGATGTAATATCCATTTTGATGT TAAACTTGGTTAGTTAGATACTGAAAAAGGATCGAGATTTGAAGGATCGA GATTAGCNTACCAAATACCGTATGTGAAAATTTTGCCTAAATTTAATCTC CTGTCTCTTTTTTATACACAGAAGACGATTGAGAAACAGAAGAAACTTCA AACAGACTTACAAACTAAAAATTCAGACTTGGAATCAGATGTGACGTCTT TGAAAAAGGTAAAAGATGTATACTCGAACCAGGCTTAAAGTTTCAGAAAC TTTGAACGTTGTCTTTTGGGCTGAACAGGGCAGGATGAACATTAGGGTAA TGGCAGGGGTAATATCCATTTTGTTGTTAAACTTGATTAGTTTTAGATAC TGAAAAAGGATCGAGATTAGCAGGATCATCAGCTATTTTAAATTTTTTTT TTACTTTTATCAATTAACAGTCGATCGTGTCAATGAAGAATGGGCTTTTC CAGAAAAGAAATTTACCCCCACTATTGAGGATATTGATTTTTCGAAGTAT CGAACCCCCTCTATATCCTACTTTATTAATAAAGACCCCCTGGATATCCA CTCTTAAAAATATGCTCAACTCCCTGGATATCTTCTCTTATAGAGATGCT TTACCCCTGGATGTCGTATGCTTTACTTGAAAAGACACTTTACCCCCCTG GATATCCGCTCCATTGTAGATATTTAACCCCTTGGATATCCACTTTTGAA CAAAAATCGTTAACCCTCTGGATATCCGACATCCTCAAAAAGGGGGGCGG GGGGTACGGACTATTTCTGGAAAAGCCCAATCTATTAGGTTAAAGCTGTG ATAATGAGAGCTACAAATGGCATCATTAAGATCAACAAGATAAAGATAAT CAAAAAACATCGACAATATGTATACCGCTTCACTCTCTTAAGATGTGAAT CTCTTAAAGCATCTCCAGGATTTTTTAAAAACCTTTTTATTAATTTTTTC TTATTTCTATCACCATAAATATCTTGCTTTATTTGTTCAATGATTTTCTC CAGCCATTGCACAACTTTATCGTGATTTTCGTTTACGTCGCGTATTTTTT CCGCTAGAGGTCCTGTCTTTGAGCAATATCTACATGTCGTCGCTAACTGA CATAAAGTCTTTTCCCAGTCATCCATTACTAAAACAGTGAGGTCTGTTAT ATAAGCTGAAAATTCGTGCACACTTATCAAAGTCTCATCAAAATGTAAAT TAATTCTTGATAGGTTTTGAAATGGTTCACGTAACTTGTCTGCATATTTG TAGGGTATCATTTCACAATTAAAATTGACCCGAGTTTTCCAGGCTTCCAT TTCATATATGAGTCGTATTATTTCAACATAGTAGTTAGCGAGGTAATCAT TAAGAGTGCTATTATCTTTGGAATTTTCAGGTATGTTTACTAAGACTTCC TGGTCCTGATAACCAGAGTTGATTTGGATGCTCATCTTATTTCTATTTTT GATTTTATCCCATTCTCTTTTATCAACCAGCTTGTATATGTTTTGTTTTG GTACAAAGAAGTTTGGTAAAAATTCTTCAGCTATCGATTTTTCTAAATGA TTCCACACCTCATTGTAAAAACTCTGGACTTTCAATTCTTCTGAAGATAG ATTCTCTTCTTTGAATGACATTGCGACAGCCATCAATGCAGTTTTCAAGA AATAAGACGGTATTTCTTTAACAGTTTTTTCAGTTTTCAAAGAATATTTC AGATTCAAGAACGCCTTTCTTTGGTAAGGTGCCAAGTTAAGTAAGATTTC TCCTTCTACTAACGAGAAAGATATTCTCCATTCAAGTTTAGCCAGTGGAC TTCCTGGAAAACTTTTTGCAATCAAAAACAAAGGAATATTCTTGAAAACA TCGATTTTTGACTGCATTGGAAAATCTTCCATCAATTCTTTCGGCCATTC ATCTAAACGTAACCCAATCACAAAATCCTTATTCGAATATCTGATAGCAG CATGCGTTTTCGATGTCTCCTCGAAATCGTATTGGTTATTTTGGTGAGCA TCTTGGCCAGTCAAAAATAAAGGAGCTAACTTCTGCTGAACAATCTGTGG ATATAAAAACATTCCATTTTGATCTTCAATAGTGTAAAATCCAGGGTTCT TAGTCTGTTTCCAGTAAAAACATTCAAATTTTCGGCGAAAATCACGGACG ATCCCAGGGCCAATCTCGTATAGATAATCATAATCAGAGTCATCTCGGTA TAAATATTCAGCGCGACTTCCTGTTAAATATTTGGTAACAAGAGTTGGAA ATAAAAGTCTAGATGGCTCATACCCGTTTACTGTAAAGGGAACAAGTTCT TTTTCAGTCAGTTTATTCTTAATGTTATTTCTGCTTCGTAACTCTTTTTC ACTTGATCAAAATCGATTTCACTCATTTTCAGCCCTTTTCCCTCCATTTT TTCTACAAATGGTACGTACTTTCGAAAAAAAATCCGTTTCTTTTTTCTAA CAAAGTTCAACTCCTTATTTTGCTTTCCCCGATTTAATTTAATAAATATC ATTATTCATTTTAACCAACAATTAAATTTTAGTGCACATACTATATTATG AATCGGCAAAAGAAAATCCTTAAAAATTTAACCTGTCGAAGATGATATGT TATGAAATTGCCAAAATAACGTTGAAAATTTAACCTGCTGTAGATATTGA ATAATTTAACCGAATTAGTTATTAAAAACCATTCATGTTTAAGAATTATT TCCCAGAAGTAGTAATAAAGTTATGATATTGCTCATCTTGTAGATTGTTG ACTAACTAGACATTGAAATGCTTATTCGAAATTTACAATAAAGATCAAAA GATTTTTCTCACGTAACGTGTCAATGACTATTTTGTTCAAAGCAGGTTAG GATAGAACAGGCTAGTGCAAAAACAGGCTAGTGCAAAAACTGGCTAGTGC AAAAACAGGCTAGTGCAAAAACTGGCTAGTGCAAAAACTGGCTAGTGCAA AAACTGGCTAGTGCAAAAACTGGCTAGTGTAAGAGCAGGCTATGTCCAAG AAAAGGCTAGTGTGAGAGCAGGCTAATGGAAAAGCAGGCTAGTACAAAAT TTGCAAATGCTTTTAACCCTAGACTATTTTAATCTAGTTCAGAAATGTAC TAAATAAAATGATCAGTTGTCTAAGAAGAATAGCGGGTTTATGTATTTGC AAGAAATTAGAACCTTACCGTCTCCGTCGCAGAAAAACACACCTACATAA ACTAAACTCGGTATTGTCCTTTAGATAAACATTGTTCTGTCGGAACTCGG GGGGGTCATATGGTCCGACCCGCGTCATGTGCCGCCCTTAAGGGTAGGTT TATCGAGACCCTCGGAATACACTGTAAGGTAAGTGTACTTTTGATAGAGT GCACTACAAGGGTCCTCCTTTAGCTGGATTCAATGTAAGGGTGTGTTTGG GGACTACTGAATTGCAAGACTGACAATAAAAATCTGATGTATATCAAAAT GTACTCTTAGGTTCCAAAAAAACAGGGGGGGTTAGAAAATTTTCGATATT TTAATAAACGGGAGGGGGACCTAATTGCCGGAGGGGGGGCTTGCAAATTG TACTTCTGAACACCCAAGAATAAGGTAAATGTAGGCTAAAATCAGGCTAT TTAGAGCAAAATAAGGGGCCTTCTCGTTGACAGCTGAAAATATTCTTAAA AATTGATAAACCGGGGGGGGGTCCTAATAAAGTACGGGGGGCGTTTATTT GGAACCTAAGAGTATAGTATCAAAAGATATGCGATCAAACTACACTGTAA GAGTCAGAAACTTTCAAAAATGCACTTTAAGGGTATCTTTTCACTGCTCA AAGGCTGCACTATAAGGGTCCGATTTTGAAAGCCATTTTTTTGGTGGCAC ATGCCGTCGTTTAGAAATCGAATCCCCCCCCTCGGGTGTCGAAATTAAAA CGTATTTGCATTCTCTTTTTTCGTTTTTACAGGAGCTGGATGGTACCAAA CGTTCAAATAAACAATCTTCCGCAAACAGAAACACACTTGAAGTCAGGTA TGCACCTTTTTCAACTTCAGGTCACTTAATATTTCGATTTAATTTCTGAG AAAATTGCCATGACTAACCCTATTATTATACTTTTCATTTATGCAATGGG CTTTTCCAGAAAAAAAATTTTAATATGGGGGGTTGAGGTTATAACTTTTT TTAGAAATTTACCCCCGGATATTGACACCATGTACGGATATTTTCTGGAA GAGCCCATTGGGTCCAGGGCTATCATCTTCTATTATTAGATCTAAAGGCT TTTCCTTTATGAGATGGTATTAGGGCTCGAGCCTTAGCAATCTCACGTTT ATCGCTTCGTAGTACACTCTGTGCGCATTGTATGTTTGATAAAGAAATTC CCGTACATGGACTTCTGCGATGAAGTATGATCTATAAGTAACAACGCTTC TCTTATCGCCTCCCCTCTCTCACCAACACTCCATAGCAGCGGTCGGTTTG AAAAATCTCAAATGAGAAAAGGCAATGATAACGACCTAATATGGCAATGA ATTTTGAAATTAGCCGTAGATACTGGGCCTGTGCACAGACAATCAAAGGG CGCTTTTTTTAAAATGTTTCAGGTTGAATCGTGCATTGGAAGAAGTTGAA AAGTATAAACAAGCTCTGAAAAAATCCAAAGAGTCGACAAAGGTAAAACA GAAATGAATACACGCTTTTTTATCATAGATATTCTTCAACGTTTTGGGAA AAATCTTCCTGAACTTTTCTCAAGGGTATTCTTAGGTTAGGATCCAAAAG CAGTCTAAATCTAACATGAAATACATACTTCGAGAAAATTTTTGGCATTC TTGTGAAACTTTCAGCATTGCTGGGAAATAATTGGAAATTTAATGGTAAA ATGCTTTAGATATTGATTTCTTAGGTTCAGCTGCCGAATTCCATGATGGT GGTATTTGGGCAATTTCATCATGAATATTCTTATAAAGTAAATTCTTATG AAAAGAAAGGGTGTACGAGAGTATTTTTAAAAGGTTTTTGTGACCAGGAA GCCTACAACGTCTTAGATTGACACCTGGCAGTCCCCAAACGATTTAAAGT ACCTGAAAATCGGACCGGTCTTGGTACAGTATTATGAGCGATTTAGTAGC GGTCAAGTTTTTGTTTTAGACTTCAGACCTTCTAAAAAATCTGATTTTGA ACCGTCCTGACCGCTCGTAGACCCTCGTCTTTCACATCAAATTTAGCTTA AAAATGACCACTTTTGTTTGTCGCAACACAACTGTGTATCCCCCACTAAT CAGTCGGCAAGACACCGTTGATTTGCAGTAAAGAGATCTTTGAGCCGGAG GTTTGTTAGTAACGATAACATGAAACAAATTATTAAAGGATGTCAACCGG TCGATTGATGTCAGTCTGGGACTGGACGCATCGAAACGGCTGCTGAATTA AATGCATTCGTAACAGTCATTTAGCGACCCTCTCAAAAAAAGTCCATTCT GAAGATTGTTCCGATTTTCAAGTACTTAAAATCGCTTGGGGAGTCTCGTA TAAGCGTTGGGTTTTACACGGGCAAATAAATTAATTTGAATGGACTTTTA GTCAATTTCTTGTAAAATCTTTCGATCTATTCATGATATGCACCATTGCA ATGACTTCACAAAATTGTGCAACTTTTCTGTCTTTGTTCCACCCAATACG TCACTTTTTCTATTGTTTAAGTGACATATTGGGTGGAAAATTTTGAAAAT TTTCAGAAGACTCTCCAGTGGTGCATATCATGAATAGGATGTTTTTTTTT CATATTACAGGCTGTGAACGATACTGACAGAAAATGTTTGGACCAATTAC AAAATGAAAATAAACGTTTGGAGTCACAAAAGAACGACCTCATGATCGCA TTCAAAAAACAATTGAAACTTATTGACATTTTGAAACGACAAAAGGTTTG CTACAAATTAGAAATGGTCCGAAAATCTTTTCTAATCGACCTTTTCATAA ATTACGTCGCGAACATCGCTTGCCTCGTATTCAAACAATTTCCATGGTAA TCATATCCCTTGAGATATTAAATGATTTTTTTATGAATAGAAAGTGGTTG TAATAAAATCATCTAGGAGTTAATCACCATGGTAATAATTTCAAAAGGAG GCAAGTGACGTTCGTGATGTAATTTATGAAAAGGTCTATTTAGTTACATT TCTAAATTATTTTACCATAGTACGTTTACAAATGAAAGTTGGATTTTTTT GAATTTCCTGAAACAATTGCAATAGTCGAGATATATTGATTTTGCTAAAT CATATTTACTCAAAATGCCAAAGATGCAGGGTGGATACGACGATGCCTGC AGCGACCGTAGATCAGTCGTAGAGCATCCGGCTAGGTCGTTGGTTCAACT CTCGGTCGGGTCATACGGTACTAAAGACTTCGTACTTAGAACAAAAAATG ATTATTGATGCCTCTCTGCTTGATGCTCAACAATTAAGAAAAGGATCAAG GGTAAGCGGAGCAATCCAGGGAGAACGAGTGCCCCCTACCATTTGGTAGA TAGCTATCGAAAGAGGAGCTCGTAGACTTACTTTCGTATGATAGAGAAAT AGAGGAAAATTTCTTTCTCTAGATGGATTCTTATATTGGGCTCTTCCAGA AAAATGAAATTTTCAGAAATGTTTTTTTGTATTTGGGAGTGGAGGATATA TATAACAATTTTCAATGATATTCCCCCCCCCCCGGACAAAATTACTTTTG GCCCCCGGACATTGGGTTTTACCCCCGGACAAGCATCAGTTAACCCCCGG ACAAGACAAAGTTTGATATTTTTTTGCTACCCCCCCCCCGGACAAAATTA CTTTTGGCCCCCGGACATTGGGTTTTACCCCCGGACAAGCATCAGTTAAC CCCCGGACAAGACAAAGTTTGATATTTTTTTGCTACCCCCCCCCCGGACA ATATATCCTCCACCCGGGGTGTACGGACATTTTCTTGAAGAACCCATAAT TATTGCTTGATTTTACTAAGGAATTTCTTTCTTTTTTTTAGATGCATATC GAAGCAGCAAAGATGTTGGAATTCACTGAAGAAGAATTTATTCGAGCTCT CGATTGGAATAATACCACGTGATAGGACCTTTCCCATAGAAAGATTATGT TTTATCTCTTTTTATCAATAACTTGAGGTTTTTCTTTTATTTAACCTTAA ATCCTTCTAGCATCTTCTAGGGGGAAGCATCTTGGCGGGGGAGGGAGGCA AGATCGACAAGTGATATGACCGTGAAGGGTTAACACTTGCAACAGTCGTG ATGTAAAACTTGTCAGAAAAGGACAGGGTCACTGGTCACTGCATGTCTCA CTTCTTTTCTTTTAAAACCGATAATTCAAGAGGAAAATTGTACATTTTGT TAATTTCTAGAGATTTTATTTGTGAATATTTTTTTTTTCAATGTGTAAAA GGATGATGTAAATTTAATGGAAACTTCTAAACAGGGT

Coding sequence (CDS) from alignment at sc0000030:345020..358756-

>TCONS_00003624 ID=TCONS_00003624|Name=TCONS_00003624|organism=Clytia hemisphaerica|type=CDS|length=1191bp|location=Sequence derived from alignment at sc0000030:345020..358756- (Clytia hemisphaerica)
CAAGAAAAGCCTCTTCAGCCTCTGTGGCTGAGTGGAAGACTGAAAATCAC
ACATGACATGAAGATGAGTAACAACAAGAAGAAAAACAATGCAAGTCTTA
TGCATAAGGAGCAAGAATTCAAGGATTTGAATGCAGCACTTGAAGAAAAA
ACAGCTTCATTAATTAATGACGTAGAGTCTGTGTTGCGTGGACAAGAATT
ATTTTTCAATGACCTTCATTCAACAGAAAAAGATCTCAGTGATATGTCAC
TTGGAACTCAGAGCATCGATGGAACAGAAGCGAATACAACAGAAGACTCT
CTACGAAAACCGCCAGCCAAAAAGAAACTGTCTGTCAAGAAGAGACCTCT
ATCTGGGCCAGTGACTGGTGCAAAAAAGAGAGAAATGAAACAAAATGGCA
GACCGAAGACTTCAATCAACACTATTCATGGAAAAGAAACATCACCTTTA
AACTTGGTTTCTGATCGAGCAGCTTTCGCAGACCGCATCAATACGTTAGA
GATGGAAGCTGCAGATGACCTGTACACACCTTCCCATTTGAATGAAGGAG
TACTTCCAGAAGCTGCTAATGAGCTAAGTAGTGATGCCACAATCAGGTTT
TTGAAAGCCAAATTACGTGTCATGCAAGAAGAGCTTGAGAATGTTGCCAA
TGAATGCAGACAAAAGGCAAGCAAGGTAACTGAACTTCAAAGCGAGATGA
AAGAATCAAATATGCAACAAACAAACTTATTGAAGAAGAACGAACAACTA
CAGAAGACGATTGAGAAACAGAAGAAACTTCAAACAGACTTACAAACTAA
AAATTCAGACTTGGAATCAGATGTGACGTCTTTGAAAAAGGAGCTGGATG
GTACCAAACGTTCAAATAAACAATCTTCCGCAAACAGAAACACACTTGAA
GTCAGGTTGAATCGTGCATTGGAAGAAGTTGAAAAGTATAAACAAGCTCT
GAAAAAATCCAAAGAGTCGACAAAGGCTGTGAACGATACTGACAGAAAAT
GTTTGGACCAATTACAAAATGAAAATAAACGTTTGGAGTCACAAAAGAAC
GACCTCATGATCGCATTCAAAAAACAATTGAAACTTATTGACATTTTGAA
ACGACAAAAGATGCATATCGAAGCAGCAAAGATGTTGGAATTCACTGAAG
AAGAATTTATTCGAGCTCTCGATTGGAATAATACCACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002015XLOC_002015Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003624-proteinTCONS_00003624-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003624-exon-sc0000030-1575043694:358696..358756TCONS_00003624-exon-sc0000030-1575043694:358696..358756Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:357916..357977TCONS_00003624-exon-sc0000030-1575043694:357916..357977Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:357474..357537TCONS_00003624-exon-sc0000030-1575043694:357474..357537Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:356372..356424TCONS_00003624-exon-sc0000030-1575043694:356372..356424Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:356135..356237TCONS_00003624-exon-sc0000030-1575043694:356135..356237Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:355712..355770TCONS_00003624-exon-sc0000030-1575043694:355712..355770Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:355082..355263TCONS_00003624-exon-sc0000030-1575043694:355082..355263Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:354583..354665TCONS_00003624-exon-sc0000030-1575043694:354583..354665Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:353567..353653TCONS_00003624-exon-sc0000030-1575043694:353567..353653Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:352249..352335TCONS_00003624-exon-sc0000030-1575043694:352249..352335Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:348460..348524TCONS_00003624-exon-sc0000030-1575043694:348460..348524Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:347815..347884TCONS_00003624-exon-sc0000030-1575043694:347815..347884Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:346562..346696TCONS_00003624-exon-sc0000030-1575043694:346562..346696Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1575043694:345020..345465TCONS_00003624-exon-sc0000030-1575043694:345020..345465Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:358696..358756TCONS_00003624-exon-sc0000030-1510915933:358696..358756Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:357916..357977TCONS_00003624-exon-sc0000030-1510915933:357916..357977Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:357474..357537TCONS_00003624-exon-sc0000030-1510915933:357474..357537Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:356372..356424TCONS_00003624-exon-sc0000030-1510915933:356372..356424Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:356135..356237TCONS_00003624-exon-sc0000030-1510915933:356135..356237Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:355712..355770TCONS_00003624-exon-sc0000030-1510915933:355712..355770Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:355082..355263TCONS_00003624-exon-sc0000030-1510915933:355082..355263Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:354583..354665TCONS_00003624-exon-sc0000030-1510915933:354583..354665Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:353567..353653TCONS_00003624-exon-sc0000030-1510915933:353567..353653Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:352249..352335TCONS_00003624-exon-sc0000030-1510915933:352249..352335Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:348460..348524TCONS_00003624-exon-sc0000030-1510915933:348460..348524Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:347815..347884TCONS_00003624-exon-sc0000030-1510915933:347815..347884Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:346562..346696TCONS_00003624-exon-sc0000030-1510915933:346562..346696Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1510915933:345020..345465TCONS_00003624-exon-sc0000030-1510915933:345020..345465Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:358696..358756TCONS_00003624-exon-sc0000030-1491911889:358696..358756Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:357916..357977TCONS_00003624-exon-sc0000030-1491911889:357916..357977Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:357474..357537TCONS_00003624-exon-sc0000030-1491911889:357474..357537Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:356372..356424TCONS_00003624-exon-sc0000030-1491911889:356372..356424Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:356135..356237TCONS_00003624-exon-sc0000030-1491911889:356135..356237Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:355712..355770TCONS_00003624-exon-sc0000030-1491911889:355712..355770Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:355082..355263TCONS_00003624-exon-sc0000030-1491911889:355082..355263Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:354583..354665TCONS_00003624-exon-sc0000030-1491911889:354583..354665Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:353567..353653TCONS_00003624-exon-sc0000030-1491911889:353567..353653Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:352249..352335TCONS_00003624-exon-sc0000030-1491911889:352249..352335Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:348460..348524TCONS_00003624-exon-sc0000030-1491911889:348460..348524Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:347815..347884TCONS_00003624-exon-sc0000030-1491911889:347815..347884Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:346562..346696TCONS_00003624-exon-sc0000030-1491911889:346562..346696Clytia hemisphaericaexon
TCONS_00003624-exon-sc0000030-1491911889:345020..345465TCONS_00003624-exon-sc0000030-1491911889:345020..345465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:345020..358756 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6105 12.5311 32.5374 36.502 43.7976 32.5939 27.1373 28.51 19.0038 17.7142 16.0578 15.0937 8.65727 8.99507 7.59293 8.00794 12.2521 11.0342 6.4568 7.2726 10.3737 9.68374 11.1046 12.8826 27.014 23.7311 13.2002 9.38196 6.37755 7.61769
Blast
BLAST of TCONS_00003624 vs. Swiss-Prot (Human)
Match: TEX9 (Testis-expressed protein 9 OS=Homo sapiens GN=TEX9 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.271e-52
Identity = 140/399 (35.09%), Postives = 215/399 (53.88%), Query Frame = 2
Query:   98 LMHKEQEFKDLNAALEEKTASLINDVESVLRGQELFFNDLHSTEKDLSDMSLGTQSIDGTEANTTEDSLXXXXXXXXXXXXXXXXXGPVTGAKKREMKQNGRPKTSINTIHGKETSPLNLVSDRAAFADR---------INTLEMEAADDLYTP----------------SHLNEGVLPE--------AANELSSDATIRFLKAKLRVMQEELENVANECRQKASKVTELQSEMK---ESNMQQTNLLKKNEQLQKTIEXXXXXXXXXXXXNSDLESDVTSLKKELDGTKRSNKQSSANRNTLEVRLNRALEEVEKYKQALKKSKESTKAVNDTDRKCLDQLQNENKRLESQKNDLMIAFKKQLKLIDILKRQKMHIEAAKMLEFTEEEFIRALDWNNT 1186
            L+  E+E+K LNA L+ KTA ++   + ++R ++   +   ST+          +S D  +  +    L                  P  G     +    +PKT       K   P+N V ++   A++         +   +++ ADD+  P                  L E  LPE         +N++ ++A IRFLKAKL VMQEEL+NV  EC +K  ++  L+S++K   E  M+Q   +  N Q Q  +EK K L  +   K   L+  ++S+++EL+  +R  KQ++++++  EVRLNRALEE EKYK  L K +++ K + + + K ++ L++ENK+LE QK +LMI FKKQLKLID+LKRQKMHIEAAKML FTEEEF++AL+W N+
Sbjct:   32 LLALEEEYKRLNAELQAKTADVVQQAKEIIRDRQEVRSRPVSTQ---------MKSCDDEDDYSLRGLL------------------PSEGI--VHLHSETKPKT-------KNIDPVNKVQNKLHSANKGRKTNSSVKLKYSDVQTADDVAIPEDFSDFSLAKTISKIEGQLEEEGLPEYIDDIFSGVSNDIGTEAQIRFLKAKLHVMQEELDNVVCECNKKEDEIQNLKSQVKNFEEDFMRQQRTI--NMQ-QSQVEKYKTLFEEANKKYDGLQQQLSSVERELENKRRLQKQAASSQSATEVRLNRALEEAEKYKLELSKLRQNNKDIANEEHKKIEVLKSENKKLEKQKGELMIGFKKQLKLIDVLKRQKMHIEAAKMLSFTEEEFMKALEWGNS 391          
The following BLAST results are available for this feature:
BLAST of TCONS_00003624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEX99.271e-5235.09Testis-expressed protein 9 OS=Homo sapiens GN=TEX9... [more]
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