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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003637 ID=TCONS_00003637|Name=TCONS_00003637|organism=Clytia hemisphaerica|type=transcript|length=5306bpRun BLAST on NCBI protein sequence of TCONS_00003637-protein >TCONS_00003637-protein ID=TCONS_00003637-protein|Name=TCONS_00003637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1620bp MLFGNMEFKQERKSDQATLPDNTIAQKICHLLGMAVTDFTKSLLKPRVKVRun BLAST on NCBI transcript from alignment at sc0000030:440783..461130- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003637 ID=TCONS_00003637|Name=TCONS_00003637|organism=Clytia hemisphaerica|type=transcript|length=20348bp|location=Sequence derived from alignment at sc0000030:440783..461130- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:440783..461130- >TCONS_00003637 ID=TCONS_00003637|Name=TCONS_00003637|organism=Clytia hemisphaerica|type=CDS|length=4863bp|location=Sequence derived from alignment at sc0000030:440783..461130- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003637 vs. Swiss-Prot (Human)
Match: MYH10 (Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3) HSP 1 Score: 1398.26 bits (3618), Expect = 0.000e+0 Identity = 852/1595 (53.42%), Postives = 1171/1595 (73.42%), Query Frame = 2
Query: 8 VISALMLFGNMEFKQERKSDQATLPDNTIAQKICHLLGMAVTDFTKSLLKPRVKVGREYTHKAQTKAQCEFAIEAISKATYERMFKWIVSRINKSLNKGKRDGNSFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQKEGIDWKFIDFGLDLQPTIDLIEKPM---GVLSLLDEECWFPKATDKSLVEKLHKSHSKHPKYLKPDFRSNSDFCVIHXKHPKYLKPDFRSNSDFCVIHYAGRVDYSAAQWLTKNMDPLNDNVVGLMVESSEPFVSALWKDLDNVVGMGVTEGM-DSSFGGGSRTKKGMFRTVSQLYKEQLAGLMNTLNSTKPNFVRCIIPNYQKKAGKINNQLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILCPGIVPKGFMDGRKATQKMIENLDMDSNLYRVGQSKIFFRAGVLAHLEEERDIKLTEIIIQFQAYCRGNIARRNYKKKIQQLSAIRVIQRNGRAWLKIRTWDWWKLFTKVKPLLSVTRQDDEKRVKEEEYKSLVDKHDKMETQHVELTKAHEKLQDEKNSIAEQLQAEIELCQEAEEARNRLQSRKAELEDLIADFXXXXXXXXXXXXXXXXXXXXLQNSIQDXXXXXXXXXXXXXXXXXXKVQVESKLKAIEDEKAVAEDANAKLSHEKKNLEERVDEISDXXXXXXXXXXXXXXXXXXXXXFIAELEEQISKGDKSSGELQKEVRKMQQEEADLKHQLSEGSAKIADLEDDVKRREQELDVAVKKGEEETAKLVTAEKQKRELQSNLEELKEDFDNERAAKEKLDRAKRDLENDXXXXXXXXXXXXDATHVQKELQRKREEEIGELKQQVQEEAKEHEKQMASIRQKHNQVAEELNNQLDSIKKNKNSVXXXXXXXXXXXXXXXXDLSRVTSMKNDADKKVKQLDSALNEAKAIKASQEESIQ-KLESSANKLQKECDQLNTQLEEIETKQANTDRAKQAAEAALEDTQEQLSTETKAKLQLQGKLREAADEANRLSEQLXXXXXXKAAVQKQLSQVQVHLDGAKKEIEVQIAALEEAEVAKQKQKRENEELRGDLEKSQGDFQKADKARKRLQGELDDVTVQMERERQNATQMAGKQRKFDQQLAEERKNVQSMQAERDNMEKLARQNETKCLSLQNQNSELEDRLAEADRQKKSLQLELQDLVETKDDVGKSVHELEKAKRLLEQQLAEQVTQMEELEDELQATEDAKLRLEVNMQAAKAQFERDLAGKEDNVEEGRRQLIKQXXXXXXXXXXXXXXXQSAQAAKRKLEGQVSDYQNQLENANKIKEEGTKALKKYMSQLKEVQKDLDESRASRDDLANQVKENEKKLKILEAEFLQMQEDLXXXXXXXXXXXXXXXXLLEELNSNSAVKAALAEERKRWXXXXXXXXXXXXXXXXXXXXMQDKVRRANLNLEQMQTELNQERAEAQQLDNTRMQLERQNKDLHGKLADLESSLRSRNKGIVATLESKVTNLEIQLDQEAKERQQLNKVLRKSEKRVKEITITIEEERSHTENYKNQLEKMTARVKNMKRQLDDSEEEVTRLNGTKRKLQRDLDENNESLESAQREVN 4777
V+S+++ FGN+ FK+ER +DQA++P+NT+AQK+CHLLGM V +FT+++L PR+KVGR+Y KAQTK Q +FA+EA++KATYER+F+W+V RINK+L++ KR G SFIGILDIAGFEIF+LNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQ+EGI+W FIDFGLDLQP IDLIE+P GVL+LLDEECWFPKATDK+ VEKL + H K+ KP + +DFC+IHYAG+VDY A +WL KNMDPLNDNV L+ +SS+ FV+ LWKD+D +VG+ GM +++FG +TKKGMFRTV QLYKE L LM TL +T PNFVRCIIPN++K+AGK++ LVLDQLRCNGVLEGIRICRQGFPNRI+FQEFRQRYEIL P +PKGFMDG++A ++MI L++D NLYR+GQSKIFFRAGVLAHLEEERD+K+T+III FQA CRG +AR+ + KK QQLSA++V+QRN A+LK+R W WW++FTKVKPLL VTRQ++E + K+EE + +K K+E + E+ + H++L +EKN +AEQLQAE EL EAEE R RL ++K ELE+++ D E + +EEEE+ + EKKK+Q IQDLEE L+EEE RQKLQLEKV E+K+K +E+E + ED N+K EKK +E+R+ E S LA+EEEKAK LAK + KQE I++LEE++ K +K+ EL+K RK+ E DL+ Q++E A+I +L+ + ++E+EL A+ +G++ET A K RELQ+ + EL+EDF++E+A++ K ++ KRDL +LE L++ELE + D T Q+EL+ KRE+E+ ELK+ ++EE K HE Q+ +RQ+H EEL+ QL+ K+ K ++EK K LE++N EL ++ + +K +++ K K+LD+ + E A K S+ + ++ +L A+KLQ E D ++T LEE E K + + E+ L+DTQE L ET+ KL L ++R+ +E N L EQ EEEEE + ++KQ+ +Q L KK+++ + +E E AK+K ++ E L LE+ + K +K + RLQ ELDD+TV ++ +RQ A+ + KQ+KFDQ LAEE+ ERD E AR+ ETK LSL E + E +RQ K L+ +++DL+ +KDDVGK+VHELEK+KR LEQQ+ E TQ+EELEDELQATEDAKLRLEVNMQA KAQFERDL +++ EE +R LIKQ+RE+EAELE+ERK R A A+K+K+E + D + Q+E ANK ++E K L+K +Q+K+ Q++L+E+RASRD++ Q KE+EKKLK LEAE LQ+QE+LA++ERARR E ERDEL +E+ ++++ K+AL +E++R EA+IA LEE+LEEE++ EL+ D+ R+ L ++ + EL ER+ AQ+ DN R QLERQNK+L KL +LE +++S+ K ++ LE+K+ LE QL+QEAKER NK++R++EK++KEI + +E+ER H + YK Q+EK AR+K +KRQL+++EEE TR N ++RKLQR+LD+ E+ E REV+
Sbjct: 349 VVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPR--------------------QLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFRAGVLAHLEEERDLKITDIIIFFQAVCRGYLARKAFAKKQQQLSALKVLQRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELLKVKEKQTKVEGELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFIKEKKLMEDRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKEEELQGALARGDDETLHKNNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKALEEETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHA-KVSEGDRLRVELAEKASKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQKKFDQLLAEEKSISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKSLEAEILQLQEELASSERARRHAEQERDELADEITNSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNDRFRKTTLQVDTLNAELAAERSAAQKSDNARQQLERQNKELKAKLQELEGAVKSKFKATISALEAKIGQLEEQLEQEAKERAAANKLVRRTEKKLKEIFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVS 1922 The following BLAST results are available for this feature:
BLAST of TCONS_00003637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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