TCONS_00003780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003780
Unique NameTCONS_00003780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003780 ID=TCONS_00003780|Name=TCONS_00003780|organism=Clytia hemisphaerica|type=transcript|length=3316bp
TACAGTGTGTTTCACCTTGAGAGAAAATGCATCTAAAATTTCAGGATTCA
GTGTATGAACGGTTCAACATATCAATGTTCGAGTATGAGAATTAACATGT
AATTGGCTGACCTTGGGTTTACAGCGATCTATTTACTTTGCAGATAACCA
GACTTTGTTgcaaaaaataatcaatttttcgTAAATTCAAGCTTGCTTAC
TTTCGTTTAGTTTCTAAAAAGGTAGAATAAAAACAATTCTTTAATGAAAG
AAAAGCCAAATACTTTTAAtaattgaaagccaaaaaggttaacattgaaa
aataaagaacgaCTGCAAAACGGTAACCATGACGATTATCCAGCCTCGTC
TTGAAACGTACATTTGTACAATGGAATTCGATCCTGCTGAGCCGAATCCA
CAATTACACATTTCAAATATCGAACCAGTTCACCAACAGAGATCAACCAA
TCAACAAAGATTTCAGTTTCCGCCCTCAACATCAAATCAGGGGCGGTCAC
CCACACCACCAAGAGGCTCACCTCCAACACCTAGAGATAACTCAGGGCGA
CCCATAACACCTCCAAGAAATTCTGGACAATCATCACCAAACAATCTGTA
TTCTCCAACTAGAAGAGGCTCTAACGGACTATCATATTCCCAGGGAGAGC
AATATTTTCATGGATCACAAACTCTGTCCCAGCTCCCAACTTCTGGAAGA
CGCCAATCGCCGCCCTATTGTCCAGCACCACGAATACCATCATCACCAGT
TACACCACAAAGATCTCAAGCATCTTTACAGACACCACAAATAGGGTTAT
CGTCGTCTCAACCGAATCTGAGAGGACACCTGCCATCGCCTACCCATAGA
AGACAACAAGCGACTCCATTGGCAGGAGTTCCTTCTAGATCAACTGCTTC
TCTACCAAGCCATAACACTAATAGACAACGTCCAAGACCACTACGACATA
TCGGTAACGAGGACATTACCAATAGATCAGCTTCAAATTCTTCACCTTAC
CACACATTTTTTCAAGGAGCTCCAGCAACTCCAGCAATACCTCTATCCCC
AACAACACCAATGTCTCCATCGGGCCCATGGAATCAGGCTTGGGGTGCCT
CCAACACTCACCCATCAACTGAATATGTCAGATACATTGATGGCAAACta
gaagtaaaagaaaaaaaagcctTATTGGATCGATACAACGAATATTGGTA
TGTTGTCAAAGGGAAAGTCGTCAACAATGTATTAAGCTCTgtgaaacttt
tcaaattcaaagacAGTAATACACATTTAGAAGAACATTTTATAGAGTCT
TGCGACCTGAGTCTGGACCGACAACTATCTGTGACAAACATATTCCAAGA
tccgaaaaaaggaaaatattcatTCGACTTgttcaacaacaaaacaaaaa
tgtcatttcgAACTTACGACAAAATGATCATGTACCGTTGGATCTACGTT
TTCCATGATTTAATCGCTCAAGGAAAAAGTGCAGATGAATTGCCCAATTT
GGTGAACAATAAAATTCCAAGCTGTATATTTTATATAGTCGGTGATGATG
GTGAACTTGTACCAAGATATCAAAACCTTCCAACAAGACAACCCTCACAA
ATCTTAGCTGACGCTCCTCTTCCACCAAGACCACCACGACGGCCCTCTGA
CCCAAATATAACGAATTTCTATACACCTCACCATCAAACTATTGCTAAAA
GGAACAGTGTGCCGCCAAGAGGACCACCCTCTAGACAAGGAAGCTTTGAT
AAAAACAGCCCTGTTTCCCCAAGAGGTCCACCTTCAAGACAACCAAGTTT
TGAGATCAACAACAACAGAGGAATGCCATCTAGACAAAAAAGCTTTGAAC
GATGTAAAAATCCTGAGGCTGAACTGTTTAAAGTCGGTTTACAGAATCGT
GTCAAATATTACCATCGTGGTATGAAAAGACAAGAAGCTGAACAGTTACT
TGAAACAAGACCCATTGGAACTTATTTAATTCGAGATTGTAGCAGAGatg
aaaaattctttgttttgaGTTATAGAGATTATATTGTAGTCAAGCACCTT
GAAATTACGTATAAGGGGACTGGTAATTACagctttgatgaaaaaaatga
gTACGTGACAGCCGAGTTTGTTTCACCAGAAGTTGGAGTAGAGCTCTTTA
TTGAACAAAAACACCGAGCTAATCGTCAAGAGTTTCATCCCCATTCATTG
ACAGACATCTTCAGAAGACCACCATCTCCGGAAAATTCTTTACCACCTTT
TACCCAAAAGAAACTGATACCAACATCTCCTGGTCACGAGTATGAAGAAG
TTAAAGATACCGTCATCAGTTCTGGGagaagaaattcaacaaaaagtgAT
ATATCGGCGATCTATTTCCACATCGACAGAGCCACCACCAAAGATCCAAA
GGATCCTAAGTATGTGAACTATCCACGCAGAGGCTCAGCACCAGATCCCA
CCCCTTCAACAAATAACCAAAGATATGTGAATTATCCTCCACCATATAAT
TCAGTGTTACAAGATTATGAAAGTGTGACAAGTCTAAATGGCGGCAAGGA
AAGACGGCGTTCAAACTCCGACGAGGAACATCATTACGTCAATGGTAACC
AAGGTAACGAAGAGCCTCATTATGAGAATGGGACTAAGTACGAGGATGGG
AATGGTTACACGCGGATGGAAAACCCCTACATACGAATGGGGCGTAATGG
AGCAACCACACCCAATGGGCGTGAAATACATGGAGACACAGGTGCCGTAG
AGCATGAAGAGAATGTCAAACACGAACCTTGAAGTAAACACAATTTCATG
TAATAATTGTTGTGTCAACGGTGGTCCTAAATAGACACAAAGTGCGACTT
TCAAAACGGTAGAATCAATAGAAAGAAGCAATGTTTTGGTTACAACACGT
CATCTTCCTTCGCTTCGAGCGTaactcttcgggatatgcgcCCTGCTCTG
ATTTTGAATATTGATTTGAATAAGAAGTAAAAGCCTGGAGCTCTATTTTT
GGATGGTATTGGATAAAACTTTTGAGTTATATTGCATTGTTGGGTTGACA
CCTTTTTAATTTTCGTTTGATAAACTATATCATCATACAAGCCTATAATC
ACAGGCAAGAACCTTGCAAACTTCCCAATATCTTAAGGTCAATTGTGGAC
AGAATGTGACCCTCTAATAGTTACTAAAACCGTAGTTTAGCAAGCTAGat
gactaattcagacatagtagaaataaagctaaAAGTAATGGAGGAAACAA
TTTTagttatacaaactaaatccatCGATGCTAAATCCCATatcaataat
cgtattatcatataac
Run BLAST on NCBI

protein sequence of TCONS_00003780-protein

>TCONS_00003780-protein ID=TCONS_00003780-protein|Name=TCONS_00003780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=817bp
MTIIQPRLETYICTMEFDPAEPNPQLHISNIEPVHQQRSTNQQRFQFPPS
TSNQGRSPTPPRGSPPTPRDNSGRPITPPRNSGQSSPNNLYSPTRRGSNG
LSYSQGEQYFHGSQTLSQLPTSGRRQSPPYCPAPRIPSSPVTPQRSQASL
QTPQIGLSSSQPNLRGHLPSPTHRRQQATPLAGVPSRSTASLPSHNTNRQ
RPRPLRHIGNEDITNRSASNSSPYHTFFQGAPATPAIPLSPTTPMSPSGP
WNQAWGASNTHPSTEYVRYIDGKLEVKEKKALLDRYNEYWYVVKGKVVNN
VLSSVKLFKFKDSNTHLEEHFIESCDLSLDRQLSVTNIFQDPKKGKYSFD
LFNNKTKMSFRTYDKMIMYRWIYVFHDLIAQGKSADELPNLVNNKIPSCI
FYIVGDDGELVPRYQNLPTRQPSQILADAPLPPRPPRRPSDPNITNFYTP
HHQTIAKRNSVPPRGPPSRQGSFDKNSPVSPRGPPSRQPSFEINNNRGMP
SRQKSFERCKNPEAELFKVGLQNRVKYYHRGMKRQEAEQLLETRPIGTYL
IRDCSRDEKFFVLSYRDYIVVKHLEITYKGTGNYSFDEKNEYVTAEFVSP
EVGVELFIEQKHRANRQEFHPHSLTDIFRRPPSPENSLPPFTQKKLIPTS
PGHEYEEVKDTVISSGRRNSTKSDISAIYFHIDRATTKDPKDPKYVNYPR
RGSAPDPTPSTNNQRYVNYPPPYNSVLQDYESVTSLNGGKERRRSNSDEE
HHYVNGNQGNEEPHYENGTKYEDGNGYTRMENPYIRMGRNGATTPNGREI
HGDTGAVEHEENVKHEP
Run BLAST on NCBI

transcript from alignment at sc0000031:94570..102701-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003780 ID=TCONS_00003780|Name=TCONS_00003780|organism=Clytia hemisphaerica|type=transcript|length=8132bp|location=Sequence derived from alignment at sc0000031:94570..102701- (Clytia hemisphaerica)
TACAGTGTGTTTCACCTTGAGAGAAAATGCATCTAAAATTTCAGGATTCA
GTGTATGAACGGTTCAACATATCAATGTTCGAGTATGAGAATTAACATGT
AATTGGCTGACCTTGGGTTTACAGCGATCTATTTACTTTGCAGATAACCA
GACTTTGTTGCAAAAAATAATCAATTTTTCGTAAATTCAAGCTTGCTTAC
TTTCGTTTAGTTTCTAAAAAGGTAGAATAAAAACAATTCTTTAATGAAAG
AAAAGCCAAATACTTTTAATAATTGAAAGCCAAAAAGGTTAACATTGAAA
AATAAAGAACGACTGCAAAACGGTAACCATGACGATTATCCAGCCTCGTC
TTGAAACGTACATTTGTACAATGGAATTCGATCCTGCTGAGCCGAATCCA
CAATTACACATTTCAAATATCGAACCAGTTCACCAACAGAGATCAACCAA
TCAACAAAGATTTCAGTTTCCGCCCTCAACATCAAATCAGGGGCGGTCAC
CCACACCACCAAGAGGCTCACCTCCAACACCTAGAGATAACTCAGGGCGA
CCCATAACACCTCCAAGAAATTCTGGACAATCATCACCAAACAATCTGTA
TTCTCCAACTAGAAGAGGCTCTAACGGACTATCATATTCCCAGGGAGAGC
AATATTTTCATGGATCACAAACTCTGTCCCAGCTCCCAACTTCTGGAAGA
CGCCAATCGCCGCCCTATTGTCCAGCACCACGAATACCATCATCACCAGT
TACACCACAAAGATCTCAAGCATCTTTACAGACACCACAAATAGGGTTAT
CGTCGTCTCAACCGAATCTGAGAGGACACCTGCCATCGCCTACCCATAGA
AGACAACAAGCGACTCCATTGGCAGGAGTTCCTTCTAGATCAACTGCTTC
TCTACCAAGCCATAACACTAATAGACAACGTCCAAGACCACTACGACATA
TCGGTAACGAGGACATTACCAATAGATCAGCTTCAAATTCTTCACCTTAC
CACACATTTTTTCAAGGAGCTCCAGCAACTCCAGCAATACCTCTATCCCC
AACAACACCAATGTCTCCATCGGGCCCATGGAATCAGGCTTGGGGTGCCT
CCAACACTCACCCATCAACTGAATATGTCAGATACATTGATGGCAAACTA
GAAGTAAAAGAAAAAAAAGCCTTATTGGTACGTAGATTATTCGTCCTCAA
TATATACCCCCGAGGAAGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGGAGGGGGGGGGGGTAATTAGGCAAGTGAAGGTACGGGT
ATGCACTGCCCTTAAGGGTAACTTTTTGGAGCCTCGAAGTCCCTGGAAGG
ATTGAAAGAATCAGTCGGGGTCCGATAAATAGGAAAATTTCAATCTTTTA
CCCCCAACGTCGAAATTTTGTCAAAGTAGTCCCAATGTAAGGGTCATAAA
ATTCGCGAGATTCTTCAATTTTCTACTCTTTTACGTCTTGACCTTTTTTT
AAAAACTTTTTAATGTATTAGTGATTGATTCAAAAACAGTGTTAGAATTT
TGAGGATTATTTTCACTTTCAAATTTTGTTTCACTATTTTCATAATCACC
TAAAAAGTTACAATTAATGCCATTATTGTCAAAGGCCTATCATAAATACC
ATAGGATTGAAATAATTTTCAACTGATGATCGTCTCCACTGCGTGAAACT
ATTAGTATTGAAATAAAACACATCAACTTCATTCGACAATAATATATATG
CTTCCGATTCCGATTGGTCAAGCACTCTTCTGACGAATGAGAGTTCAATT
CAACAAGAAGTTAGGATTGAAATAAAAATTTATTTTATAAAAACGTATAA
TTAATCCACCAAGTTTGGCAATCAGTTTTCAGTATCGCAGAGCTATCTAT
CTATCCTTCTAGGATCGATACAACGAATATTGGTATGTTGTCAAAGGGAA
AGTCGTCAACAATGTATTAAGCTCTGTGAAACTTTTCAAATTCAAAGACA
GTAATACACATTTAGAAGAACATGTACGTATATTTTTTTGATTCTTTCAG
CTCTCCTTACTCCCTGATTATAAGCTTATCATCAATCTCATATGAATATG
TCGACTACCTTATCGGTCCTTTTAACACCGGCCCTTAATGGCGTTATTTT
TGGGCTCGTGGCGTAATAAGGGCCAGCGTAAAAGGGGCCGGCGTTAAATT
AGGGTCGGCGTAAAAAGGGCTGATAAGGTATATCAAGAAAATATAAAGAT
TACGCCAGCATGAAACCCCGTGTAGCAGTTGTAAATTAGTTCCTTATTTC
TCGATATTTCGCTCGATTTCTTCCGAATTTTCTTGAGCACTTTGTGATTC
TATTTATTTCACTGTATGTCGATCATATCAACTTTGGAAAAAAATTATTC
AATTATTTCGAGATTTTTCTCAGAACAATAGAAGGAATAGAAGAAATGAA
AGTGCCAAATATCCGAAATGGAAAACTGTTCTGTTGAAAATTATAGTTCT
CAGGTATGCTGCGCTGGTAATCACTCTACTTCTGCTCTTCAGTTTATAGA
GTCTTGCGACCTGAGTCTGGACCGACAACTATCTGTGACAAACATATTCC
AAGATCCGAAAAAAGGAAAATATTCATTCGACTTGTTCAACAACAAAACA
AAAATGTCATTTCGAACTTACGACAAAATGATCATGTACCGTTGGATCTA
CGTTTTCCATGATTTAATCGCTCAAGGAAAAAGTGCAGATGAATTGCCCA
ATTTGGTGAACAATAAAATTCCAAGCTGTATATTTTATATAGGTAGGGAT
AATTTGAAAAATTGAAGAAAGTGATTAATCATTAAGAATGTAATGTGTGC
GTAATGACCCAAAGTTCTAATTGTAAAGGTTTTCTGAAAAATAGATCTTA
ATGCAGACAAAGGCAAAGCTAGAGTCAAGCATAAATTAACAACAAACTCT
TTGTTCATCGAGGCATAGCGGCGTATCTTAAAATTTCTTCTATTTATATA
TAGTCGGTGATGATGGTGAACTTGTACCAAGATATCAAAACCTTCCAACA
AGACAACCCTCACAAATCTTAGCTGACGGTGAGACTTGTAAATATCCTTA
GCTCTGACACAACATTATTGTAGACGCTGCTTATGGTTTTTATAACGTTG
TATCTCCTCATGGGTATGCCATAGGTAATTTATAGCGAATTCAGATTATT
AATCATATCATACTTGAGTGATACTTTTTACCCCAGGGAAGGAAAGCTGA
AATAAAGCCAAATTTGAAACCAGAACATTTGGAGTGGGAGGGCAAAACAT
TTAGAAAAGATTGCCGCTCGCTACGTTTAAGTGATGAAGAAAACTGTATC
TTCTAAACATCATAAAAAACCTTTGATTAGATAAAAACACACTAATGACA
TATCATCAAGTGTATATCTAATCAAAATTAACATTTTATCCACAGCTCCT
CTTCCACCAAGACCACCACGACGGCCCTCTGACCCAAATATAACGAATTT
CTATACACCTCACCATCAAACTATTGCTAAAAGGAACAGTGTGCCGCCAA
GAGGACCACCCTCTAGACAAGGAAGCTTTGATAAAAACAGCCCTGTTTCC
CCAAGAGGTCCACCTTCAAGACAACCAAGTTTTGAGATCAACAACAACAG
AGGAATGCCATCTAGACAAAAAAGCTTTGAACGATGTAAAAATCCTGAGG
CTGAACTGTTTAAAGTCGGTTTACAGAATCGTGTCAAATATTACCATCGT
GGTATGAAAAGACAAGAAGCTGAACAGTTACTTGAAACAAGACCCATTGG
AACTTATTTAATTCGAGATTGTAGCAGAGATGAAAAATTCTTTGTTTTGA
GTTATAGAGATTATATTGTAGTCAAGCACCTTGAAATTACGTATAAGGGG
ACTGGTAATTACAGCTTTGATGAAAAAAATGAGGTATTATTTCCAATTCT
TTTGTGCTTTTGGAGAATGTGGTCTTTTTGAAACTTGGATACACAGATAT
AAAACTTTTGATACTACATATATCTCTCCTGTGCAATGATCTCTCTTATA
GTCTAGGGCTTATTATAAGTATGTCTTGTCTTGTTTTAATTTAGTCTTTT
GTTCAAATTTTGTTCAAATTTTGATCTCCTACTGTAAACGCATTACAATA
AAGCCTCATAATCTTTCTTGTTGGTACTTCACCATGGCAACCATACATTT
GAAATGAGGCTAAATAACATTACAGTAGTAGAAAGCAAACGATTATTGTA
CAATTTCTTTCTGCTGTTTTTTTCTCTCAGTACGTGACAGCCGAGTTTGT
TTCACCAGAAGTTGGAGTAGAGCTCTTTATTGAACAAAAACACCGAGCTA
ATCGTCAAGAGTTTCATCCCCATTCATTGACAGGTAAATATCCTATTAAA
GAGACGGCTCAAATCAACTGGAATAAGAACTTGTAATTTCTTTTCCGAGA
TCAAGCTGTTCTTTCTTTTCGTGATTTCAGGCTCGAATTCGTTCACGTTT
TTAACCCACTTACTTAATTCACTTTTTGGCTTGAAGAGGTCTAAAATACA
GTATTTTCTTGGCAATTTTCGATTCCTGAGGCTGATATTATTCTTAAATT
ATTTTCAGGTTTTGGGCAAATTTACCTCTTTCCAGAATAATCGGAGAAAT
GTCAAGCAGGAAATGATTATGCAATACTTTCCTTGACTTTTCTTTCCTAT
AGGTGCCTCTTGAGTTATTTCAATAATTGTCTAAGTATACCAGGTAGGGA
CCTCGACAAAAACTATATCTGTGTGGCAAAAGCTCAATTTTCGTTTTGCT
TCTTTTTCATAGACATCTTCAGAAGACCACCATCTCCGGAAAATTCTTTA
CCACCTTTTACCCAAAAGAAACTGATACCAACATCTCCTGGTCACGAGTA
TGAAGAAGTTAAAGATACCGTCATCAGTTCTGGGAGAAGAAATTCAACAA
AAAGTGGTAAGAGTACAGAATATAGCTTTTAGCATATTCATTCATTTTAG
CATATTCTTAGGCTAACACGCCAGCCAAAGTTCGAAATTATGTCAGACAA
ACTTTTAGCATGTTTCTAGAGTAGGGCGTTAATCGAAATTCGAAATGATG
TCAAATAAAAGTGATCGTATGAACTATGAGTTAGGTAATCGTTGAAGCTA
AATTTGTAAGGTTGCAAATTGTTTTAAAAATGTCTGAAACAATCTTCATA
AAATTTCTTGTAATTGGTGAGCAGCAGTAAACTTGGAGGATGGAACCAAA
AAGAATTATCACTTAAGTGTATTTTTGTGTAAGAACGACAGGTCATTGTT
GTTATTCGTGTTAATTAATTACTCCTTTCTCATTTAGATATATCGGCGAT
CTATTTCCACATCGACAGAGCCACCACCAAAGATCCAAAGGATCCTAAGT
ATGTGAACTATCCACGCAGAGGCTCAGGTATGTTTTATTTGCAGTAGTTT
AATCCGGGAGTTTAATGTTTCAACTTATAAAATGGAGTCTGGTAATGTCC
AAGAAATTGTACCTTTTTGAAAGATCGAAGATTTATGTAAGGCTTACAAA
TATCAAGTCACCTTCTAAAGGCTCACAACAATCACAAAAAACGTTAATTT
TCCCTCTAAAAGGTCACCAAACAAACTTTCGGGATATTCTAAAGCTTTTC
CAAAAATGTTTCTCACAACACTTTCAACAATTTCAAACCCGAATTCATTT
TTCCAGCACCAGATCCCACCCCTTCAACAAATAACCAAAGATATGTGAAT
TATCCTCCACCATATAATTCAGTGTTACAAGATTATGAAAGTGTGACAAG
TCTAAATGGCGGTAAGTGAGATTAAATTGATAAAAATCATTGTGTGTCTA
GCTCATTGATCTATATTTATACTAGAAATACGAATAAATATAGTGAATAT
GAAATAAGCTAAACCAAACCTCCAAGATTGAACACCCACAGCTCCAAGAA
TAGAAATTATACCATGATTCTACCATGAGTTATTTGAGTTTATGATAATA
TTCCACTCATCATTATCTTTTTAAACAGAGACGAAAATTTTCAATTCAAA
TTTAATGAGAGGTTATGTTTGCATTTCTTAGTACTGGAATATTATTTGAA
AATACTTCTTAATTTTCTTATTATTGACATTTCAGGCAAGGAAAGACGGC
GTTCAAACTCCGACGAGGAACATCATTACGTCAATGGTAACCAAGGTAAC
GAAGAGCCTCATTATGAGAATGGGACTAAGTACGAGGATGGGAATGGTTA
CACGCGGATGGAAAACCCCTACATACGAATGGGGCGTAATGGAGCAACCA
CACCCAATGGGCGTGAAAGTAAGTAATTTTCTCCCCGCTACTTTTTTTTT
GGAACACTTAATGCAATTCTTTTCCATTGAATCTTAAATGGTAAAAAATA
AAGTCAATTTCCCAGTTGGGCTTTAATTGTACAATTGTAGGCTATTTCCC
CCTCCGGTGAGTGTGCTCTCTAGTGCACACTCAAAGTGAGCATGGTACTC
TCGGGTGAAACAAGGCATGTCCCAAATATATTTTGCGTGACGCGCACCGC
TTCCAATTATTCCTTAACGTTCATATATAGCTCAAAAGAATCATATCAAC
GATTGGATTTCAAAAAGTGCTGGGTCAAAAATTTGCATTAAGCCAATCTC
AAGATATCGGTCAAAAATTGATTTTGACGTTATAAAATACATCGAAAAAA
CACGTCATAAGTAAGATTCAAATGACCTCATTATTGAAAAACAGCGATAA
CTTCAATTTTATTAATGCAATCAACACCAAGTTTTGACAGGAGTTGTAAA
TTAATGATTCTAAAATATTTGTTCAAAAATTTTCAGAAAATTTGAATGAC
GTCATTTGTTGTCGGGAAAAATTAAAATATGTCAAAAAATGCTGACGTCA
TCATGAATTTTAAAATTTTTTTCATGAAATATTTTAGAATCGTTAATTTA
CATCTTCAGTCAAAATTTTACTTGATTGTAGTAAGTTAATCGAAATTATC
GCCTTTTTTCAATAATAACGTCATTTAAATTGTCTTTTTGACGTGTTTTT
TCGATGTATTTTATAACGTCAAAATCAGTTTTTGGCCGATATCTTGAGAT
TGGCTTGATGTAAATTTTTAACCCAGCACTTTTCGAAATTCCCGTGTTGA
TACGATTCTTTTGAGCTATATATGAAAGTTAATGAATAATGAGAAGCGGT
GTGCGTCACGCAAAATATATTTGGGACATGCCTTGTTTCACCCAAGCTAC
TCGATTAGCTCAATTATTTGATAATTTGAAAGTCACGGTCAACAAGAAAC
ACTTATAAACGACGCCCTACCATTCGATACGCTTTTTTACGATGAAAATC
TGATCCCCTTTGACTATCGAATTGGAGAGCGTCAGCTGAGAAAAAGGCAA
AGTCAGTGGTTGCAATTTGCTTGGCTAAGCCAAGATATACGGACATGAAT
ATTTTGACACGCTTTGATAATTATATTTCATTTTCTTTCTAGTACATGGA
GACACAGGTGCCGTAGAGCATGAAGAGAATGTCAAACACGAACCTTGAAG
TAAACACAATTTCATGTAATAATTGTTGTGTCAACGGTGGTCCTAAATAG
ACACAAAGTGCGACTTTCAAAACGGTAGAATCAATAGAAAGAAGCAATGT
TTTGGTTACAACACGTCATCTTCCTTCGCTTCGAGCGTAACTCTTCGGGA
TATGCGCCCTGCTCTGATTTTGAATATTGATTTGAATAAGAAGTAAAAGC
CTGGAGCTCTATTTTTGGATGGTATTGGATAAAACTTTTGAGTTATATTG
CATTGTTGGGTTGACACCTTTTTAATTTTCGTTTGATAAACTATATCATC
ATACAAGCCTATAATCACAGGCAAGAACCTTGCAAACTTCCCAATATCTT
AAGGTCAATTGTGGACAGAATGTGACCCTCTAATAGTTACTAAAACCGTA
GTTTAGCAAGCTAGATGACTAATTCAGACATAGTAGAAATAAAGCTAAAA
GTAATGGAGGAAACAATTTTAGTTATACAAACTAAATCCATCGATGCTAA
ATCCCATATCAATAATCGTATTATCATATAAC

Coding sequence (CDS) from alignment at sc0000031:94570..102701-

>TCONS_00003780 ID=TCONS_00003780|Name=TCONS_00003780|organism=Clytia hemisphaerica|type=CDS|length=2454bp|location=Sequence derived from alignment at sc0000031:94570..102701- (Clytia hemisphaerica)
ATGACGATTATCCAGCCTCGTCTTGAAACGTACATTTGTACAATGGAATT
CGATCCTGCTGAGCCGAATCCACAATTACACATTTCAAATATCGAACCAG
TTCACCAACAGAGATCAACCAATCAACAAAGATTTCAGTTTCCGCCCTCA
ACATCAAATCAGGGGCGGTCACCCACACCACCAAGAGGCTCACCTCCAAC
ACCTAGAGATAACTCAGGGCGACCCATAACACCTCCAAGAAATTCTGGAC
AATCATCACCAAACAATCTGTATTCTCCAACTAGAAGAGGCTCTAACGGA
CTATCATATTCCCAGGGAGAGCAATATTTTCATGGATCACAAACTCTGTC
CCAGCTCCCAACTTCTGGAAGACGCCAATCGCCGCCCTATTGTCCAGCAC
CACGAATACCATCATCACCAGTTACACCACAAAGATCTCAAGCATCTTTA
CAGACACCACAAATAGGGTTATCGTCGTCTCAACCGAATCTGAGAGGACA
CCTGCCATCGCCTACCCATAGAAGACAACAAGCGACTCCATTGGCAGGAG
TTCCTTCTAGATCAACTGCTTCTCTACCAAGCCATAACACTAATAGACAA
CGTCCAAGACCACTACGACATATCGGTAACGAGGACATTACCAATAGATC
AGCTTCAAATTCTTCACCTTACCACACATTTTTTCAAGGAGCTCCAGCAA
CTCCAGCAATACCTCTATCCCCAACAACACCAATGTCTCCATCGGGCCCA
TGGAATCAGGCTTGGGGTGCCTCCAACACTCACCCATCAACTGAATATGT
CAGATACATTGATGGCAAACTAGAAGTAAAAGAAAAAAAAGCCTTATTGG
ATCGATACAACGAATATTGGTATGTTGTCAAAGGGAAAGTCGTCAACAAT
GTATTAAGCTCTGTGAAACTTTTCAAATTCAAAGACAGTAATACACATTT
AGAAGAACATTTTATAGAGTCTTGCGACCTGAGTCTGGACCGACAACTAT
CTGTGACAAACATATTCCAAGATCCGAAAAAAGGAAAATATTCATTCGAC
TTGTTCAACAACAAAACAAAAATGTCATTTCGAACTTACGACAAAATGAT
CATGTACCGTTGGATCTACGTTTTCCATGATTTAATCGCTCAAGGAAAAA
GTGCAGATGAATTGCCCAATTTGGTGAACAATAAAATTCCAAGCTGTATA
TTTTATATAGTCGGTGATGATGGTGAACTTGTACCAAGATATCAAAACCT
TCCAACAAGACAACCCTCACAAATCTTAGCTGACGCTCCTCTTCCACCAA
GACCACCACGACGGCCCTCTGACCCAAATATAACGAATTTCTATACACCT
CACCATCAAACTATTGCTAAAAGGAACAGTGTGCCGCCAAGAGGACCACC
CTCTAGACAAGGAAGCTTTGATAAAAACAGCCCTGTTTCCCCAAGAGGTC
CACCTTCAAGACAACCAAGTTTTGAGATCAACAACAACAGAGGAATGCCA
TCTAGACAAAAAAGCTTTGAACGATGTAAAAATCCTGAGGCTGAACTGTT
TAAAGTCGGTTTACAGAATCGTGTCAAATATTACCATCGTGGTATGAAAA
GACAAGAAGCTGAACAGTTACTTGAAACAAGACCCATTGGAACTTATTTA
ATTCGAGATTGTAGCAGAGATGAAAAATTCTTTGTTTTGAGTTATAGAGA
TTATATTGTAGTCAAGCACCTTGAAATTACGTATAAGGGGACTGGTAATT
ACAGCTTTGATGAAAAAAATGAGTACGTGACAGCCGAGTTTGTTTCACCA
GAAGTTGGAGTAGAGCTCTTTATTGAACAAAAACACCGAGCTAATCGTCA
AGAGTTTCATCCCCATTCATTGACAGACATCTTCAGAAGACCACCATCTC
CGGAAAATTCTTTACCACCTTTTACCCAAAAGAAACTGATACCAACATCT
CCTGGTCACGAGTATGAAGAAGTTAAAGATACCGTCATCAGTTCTGGGAG
AAGAAATTCAACAAAAAGTGATATATCGGCGATCTATTTCCACATCGACA
GAGCCACCACCAAAGATCCAAAGGATCCTAAGTATGTGAACTATCCACGC
AGAGGCTCAGCACCAGATCCCACCCCTTCAACAAATAACCAAAGATATGT
GAATTATCCTCCACCATATAATTCAGTGTTACAAGATTATGAAAGTGTGA
CAAGTCTAAATGGCGGCAAGGAAAGACGGCGTTCAAACTCCGACGAGGAA
CATCATTACGTCAATGGTAACCAAGGTAACGAAGAGCCTCATTATGAGAA
TGGGACTAAGTACGAGGATGGGAATGGTTACACGCGGATGGAAAACCCCT
ACATACGAATGGGGCGTAATGGAGCAACCACACCCAATGGGCGTGAAATA
CATGGAGACACAGGTGCCGTAGAGCATGAAGAGAATGTCAAACACGAACC
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002106XLOC_002106Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003780-proteinTCONS_00003780-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003780-exon-sc0000031-1575043694:101525..102701TCONS_00003780-exon-sc0000031-1575043694:101525..102701Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:100629..100739TCONS_00003780-exon-sc0000031-1575043694:100629..100739Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:99860..100109TCONS_00003780-exon-sc0000031-1575043694:99860..100109Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:99574..99648TCONS_00003780-exon-sc0000031-1575043694:99574..99648Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:98719..99206TCONS_00003780-exon-sc0000031-1575043694:98719..99206Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:98269..98371TCONS_00003780-exon-sc0000031-1575043694:98269..98371Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:97696..97839TCONS_00003780-exon-sc0000031-1575043694:97696..97839Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:97225..97314TCONS_00003780-exon-sc0000031-1575043694:97225..97314Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:96841..96945TCONS_00003780-exon-sc0000031-1575043694:96841..96945Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:96334..96516TCONS_00003780-exon-sc0000031-1575043694:96334..96516Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1575043694:94570..95159TCONS_00003780-exon-sc0000031-1575043694:94570..95159Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:101525..102701TCONS_00003780-exon-sc0000031-1510915933:101525..102701Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:100629..100739TCONS_00003780-exon-sc0000031-1510915933:100629..100739Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:99860..100109TCONS_00003780-exon-sc0000031-1510915933:99860..100109Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:99574..99648TCONS_00003780-exon-sc0000031-1510915933:99574..99648Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:98719..99206TCONS_00003780-exon-sc0000031-1510915933:98719..99206Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:98269..98371TCONS_00003780-exon-sc0000031-1510915933:98269..98371Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:97696..97839TCONS_00003780-exon-sc0000031-1510915933:97696..97839Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:97225..97314TCONS_00003780-exon-sc0000031-1510915933:97225..97314Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:96841..96945TCONS_00003780-exon-sc0000031-1510915933:96841..96945Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:96334..96516TCONS_00003780-exon-sc0000031-1510915933:96334..96516Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1510915933:94570..95159TCONS_00003780-exon-sc0000031-1510915933:94570..95159Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:101525..102701TCONS_00003780-exon-sc0000031-1491911889:101525..102701Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:100629..100739TCONS_00003780-exon-sc0000031-1491911889:100629..100739Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:99860..100109TCONS_00003780-exon-sc0000031-1491911889:99860..100109Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:99574..99648TCONS_00003780-exon-sc0000031-1491911889:99574..99648Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:98719..99206TCONS_00003780-exon-sc0000031-1491911889:98719..99206Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:98269..98371TCONS_00003780-exon-sc0000031-1491911889:98269..98371Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:97696..97839TCONS_00003780-exon-sc0000031-1491911889:97696..97839Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:97225..97314TCONS_00003780-exon-sc0000031-1491911889:97225..97314Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:96841..96945TCONS_00003780-exon-sc0000031-1491911889:96841..96945Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:96334..96516TCONS_00003780-exon-sc0000031-1491911889:96334..96516Clytia hemisphaericaexon
TCONS_00003780-exon-sc0000031-1491911889:94570..95159TCONS_00003780-exon-sc0000031-1491911889:94570..95159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:94570..102701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0467427	0.11135	0.0775727	0.0758928	0	0	0	0	0	0	0	0	19.3377	16.9484	13.3906	23.3805	3.98267	3.82651	10.3352	19.5763	0	0	0.0803915	0	0.200742	0.38071	0.0469717	0	0.0253476	0.0129126
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
IPR011993PH_dom-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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