TCONS_00003814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003814
Unique NameTCONS_00003814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003814 ID=TCONS_00003814|Name=TCONS_00003814|organism=Clytia hemisphaerica|type=transcript|length=2850bp
TTTAGATAAAGTAAAACATTTATTGAATGTATCTCCAAACTACACAAAga
aataacattgaaaaatgttaagaattccAAATGAGGAGAAAGCCCCAAAT
ATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACCACAAACCAACGA
GGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTGAAAAAGAGATTG
CTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAAGAAGcaCTAATT
GGTTATAAACAACTTGTTCAACATGAAAAACAAGCTGAGGAGGAGAAACA
CGATCAAACCAAACTCTCCACATATGATTTTGATAAACGGAAAGTCAGCC
GTGGTTTTTCTCTTTCCAACTTCAAAATCATTCAAGATGAAAGAGAAAAG
CAAAAAACTCTGGTTTGTCAAGAAAGTACAACCCAAGATTCTTTCAAAGT
TCTTGGCCCTTCATCAAGAGAATCGTTTGTTTTGCCAGACATATCAATGC
TGGACAAGGATGTGGCTTATATCATCAAAACAGAACTCATTAGTAAAAGT
GCTCTCCATAAGCTTACCAATGTGGgaCGTTTAAATTGGTGGACTGAAAT
GGGTACATGTCGCAAATTATTTCCACTCTTGACAGTAGGAGATGGGAATT
GTTTATTGCATGCAGCTTCACTTGGAATGTGGGGCTTCCACGACCGGATG
TTGATCCTGCGTAAAGCACTTTATCAAATGTTTCTAAATCCAATTGCAAT
TAAAGCATTGAAAAGACGTTGGAAGTATAACATGTGGGTTGATAATATGA
AGTGCGGTGGTTTGACTTTTACTCGCCAAGAATGGGACACAGAGTGGAAC
ACAGTTGTCGGGCTAACCAGCAATGTCTCACACAAGCTAGAATCAGACTC
TTCACAGAACTGCAAAAGAATAACCCGACAAATTTCATTATCAAGCTCTA
ATTCCGAACTAGAAGAAGGAGAGAGCTTAGATAGTCTTGAACCAATTCAT
GTGTACGCACTTTCAAATTTATTGTGTCGACCCATTATTGTTCTGTCAGA
AGATATGTTAAAGGATGCAGAGGGTCGTCCTATCGCCCCAATCCCTTTTG
GTGGGATATATTTACCGTTAGAGCAAGATGTCAGTAAATGTTATAAATAT
CCTCTCATTTTGGCTTTCGAGTCATCACATTTTTCAGCTTTGGTACCTGC
TGATGGTGACAATTTACATAATGGCGAGAAGTTGTCATCAAGTGTGCCAT
TACAAAACAAAGATCTTGCATTTTTGGATCTCAAATTTGCAATGGATCCT
GGATCAACTTGGGATATGGTTCAGGATGATAGTGTAAAGGAGGAACGTAT
GGAATTAACATTACaagagaaaattattttattgcGGAAATATATGGATG
TTGTTAAAGTCCCATCCAAAAAGGCAAAGCCAGCACCTCCACCAGTTAAT
GATTTAAGGGTTGGTTCTGTTATTGATCATGTACATAATGTCTTAGTTGG
GCGACCAGAAAATTTACAACCACCAGCCCCTGAACCAGATATAATGCTTG
TTTGCGCTAAAATTAGCATGAAGAATCGTCCAAAACATTACAAGGAAATG
ATTCAAAACTTTATTGACACCAAAATGGTTGAAGCTAAAGAATTACGAGA
TTTACAAAATCGATGTCCAAATTGTGGTGCTGAAGGTTTCCCACATTTGA
AAGGTTATTGTGAGTGGTGTTTTGAGCGCGCCAAGATGGTTGGAGGGAAA
tcaccaagtccaaaacagaAATCGCCCATCAGTACGCTTGTGAGGAGAAC
AAACAAATTGCTGATAGGGGAACCTGACAATaacaaaaatcagaaacaaa
ATTTATTGTGTTCTCCACCCTCACCAAGAACTTCCTCTAAGACGTTACCA
ATGCCtgctaaaaagaaagaaaacaacaGCATACCATCAACACAAAATGT
GACCCAAGATGAACCTTTGCCCATGAAATCACGATCAGCTGATAATATTC
ACTATCCGCCATCAATGCGAGGTCAGCAAACAAGAGAACAGATTATTAGC
CAAGAAGAAGCTGGTTTTTATCGCAGTCAATCACTTTCAAACAGGCCTGA
AGTTGCCCCTTTGAACCCTTCACTATCTCGACCACAAACTTCAGAGCCCT
CATCTCGACCCCAAATATCAAGGCCGTTATCTGATCCGCAAAATACCAAT
GAATCACAACCATCAAGACCTCAGACGTCACCAAATACTTCATCATCAAC
TTCACCAGGAGAATTTGTTCCTGGTAAACCATGCAAAGTGTCTGGCTGTA
ATTTTTATGGCAGTAATCAAACTTTAGGGTTTTGTTCTGGCTGTTACAGA
CAATATAatcattgaaattgaaatattaaTGGCTTGTGTACATTTAGTAA
GGTAGAATTTAtttgtagttttttttttaccatagaaagtatttttagtA
AAGTGTCTAGTAGAAAATGTAtttaaagattcttttttttcGTATAAATT
TGTTATtagaaattaatattttttatttggtggtagtataaaaatgattt
ttaagattttgacacAGATAATTATCTACTAAGTATCTTCAAAAgtaaaa
caagttttttttttgtcaaataagtgtataaaatttctatttaatgattt
ttttttaactcaagttttttggttgtttttgttattgttgtatTTGTAAT
TATTTCTTATTGATATTCTTGTAGTAAAAACTTATTTAAATAcaatcaat
ttctgaaaaaatctaatGACAAAGTTGCTCCTCGACTcttgtcaaaatta
tttttcattttttattgtatCCAGGATGGATGGTCTAGCTAAAAAGTGAA
Run BLAST on NCBI

protein sequence of TCONS_00003814-protein

>TCONS_00003814-protein ID=TCONS_00003814-protein|Name=TCONS_00003814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp
MLRIPNEEKAPNIQITPSESIPISPQTNEEKVVYLVRQTGIEKEIAREFL
ESNGWNLQEALIGYKQLVQHEKQAEEEKHDQTKLSTYDFDKRKVSRGFSL
SNFKIIQDEREKQKTLVCQESTTQDSFKVLGPSSRESFVLPDISMLDKDV
AYIIKTELISKSALHKLTNVGRLNWWTEMGTCRKLFPLLTVGDGNCLLHA
ASLGMWGFHDRMLILRKALYQMFLNPIAIKALKRRWKYNMWVDNMKCGGL
TFTRQEWDTEWNTVVGLTSNVSHKLESDSSQNCKRITRQISLSSSNSELE
EGESLDSLEPIHVYALSNLLCRPIIVLSEDMLKDAEGRPIAPIPFGGIYL
PLEQDVSKCYKYPLILAFESSHFSALVPADGDNLHNGEKLSSSVPLQNKD
LAFLDLKFAMDPGSTWDMVQDDSVKEERMELTLQEKIILLRKYMDVVKVP
SKKAKPAPPPVNDLRVGSVIDHVHNVLVGRPENLQPPAPEPDIMLVCAKI
SMKNRPKHYKEMIQNFIDTKMVEAKELRDLQNRCPNCGAEGFPHLKGYCE
WCFERAKMVGGKSPSPKQKSPISTLVRRTNKLLIGEPDNNKNQKQNLLCS
PPSPRTSSKTLPMPAKKKENNSIPSTQNVTQDEPLPMKSRSADNIHYPPS
MRGQQTREQIISQEEAGFYRSQSLSNRPEVAPLNPSLSRPQTSEPSSRPQ
ISRPLSDPQNTNESQPSRPQTSPNTSSSTSPGEFVPGKPCKVSGCNFYGS
NQTLGFCSGCYRQYNH
Run BLAST on NCBI

transcript from alignment at sc0000031:654256..659117-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003814 ID=TCONS_00003814|Name=TCONS_00003814|organism=Clytia hemisphaerica|type=transcript|length=4862bp|location=Sequence derived from alignment at sc0000031:654256..659117- (Clytia hemisphaerica)
TTTAGATAAAGTAAAACATTTATTGAATGTATCTCCAAACTACACAAAGA
AATAACATTGAAAAATGTTAAGAATTCCAAATGAGGAGAAAGCCCCAAAT
ATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACCACAAACCAACGA
GGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTGAAAAAGAGATTG
CTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAAGAAGGTTTGTTA
TATAGGTTTTTTAACTTTTTTTGTACATAATCTTTAAAAGTAAAAGTAGT
AACCTGTTATAATTGTTCTAGTAATTCTAATAATTCCGTACAACCAGGTC
AGGGAGCAGAAGCAGGGAGACTTCAGCCTCCCCACTTTTGAGAAAATGAG
ATTTTTTTCTCAAATTCCCAGCAAATTTATCTCATTTTGAGCCTTCAGCC
TCCCCACTTTTATGGTTGTTCTGCCAGGGCTGCAACTTGGTGAAGTTCAT
GTTATATCATTATCATGTTTGGGTTTTGGAAAGTTTGTACTTTGTATAGA
ATACATCTTCATCTTCACTCAACAAGAGTTGAAATAATTATGTCATTTTT
TTCCAGCACTAATTGGTTATAAACAATAATTATGTCATTTTTTTCCAGCA
CTAATTGGTTATAAACAATAATTATGTCATTTTTTTCCAGCACTAATTGG
TTATATAAACAATAATTGTGTCATTTTTTTCCAGCACTAATTGGTTATAA
ACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAAACAATA
ATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAAACAATAATTATG
TCATTTTTTTCCAGCACTAATTGGTTATATAAACAATAATTATGTCATTT
TTTTCCAGCACTAATTGGTTATAAACAATAATTATGTCATTTTTTTCCAG
CACTAATTGGTTATATAAACAATAATTATGTCATTTTTTTCCAGCACTAA
TTGGTTATATAAACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTT
ATATAAACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAA
ACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAAACAATA
ATTATGTCATTTTTTTCCAGCACTAATTGGTTATAAACAATAATTATGTC
ATTTTTTTCCAGCACTAATTGGTTATAAACAACTTGTTCAACATGAAAAA
CAAGCTGAGGAGGAGAAACACGATCAAACCAAACTCTCCACATATGATTT
TGATAAACGGAAAGTCAGCCGTGGTTTTTCTCTTTCCAACTTCAAAATCA
TTCAAGATGAAAGAGAAAAGCAAAAAACTCTGGTTTGTCAAGAAAGTACA
ACCCAAGATTCTTTCAAAGTTCTTGGCCCTTCATCAAGAGAATCGTTTGT
TTTGCCAGACATATCAATGCTGGACAAGGATGTGGCTTATATCATCAAAA
CAGAACTCATTAGTAAAAGTGCTCTCCATAAGCTTACCAATGTGGGTAAG
TAAGAAATTTGAGTTTTTTTTACCATGTCTAGAGATTTTTTAAATTACAT
AGGCATATCTCAGAAATTCCCTGATTTTCTTGCCCAAAGATACATAAATA
GCATTTTAACCCTCATAACATCGTTGTCAAAGCAGAAGGACCAATCTCAA
GATGAGTCTCTTGGCATATTGAGAATCTTTCTATAAGATAAACCTTTGAT
AATGAAATTGGCCCTCTAATCTTACCAAGGAGAGATTCATCCAAAGGTTT
ATTCTCACCTTCCTAAGATACTAATTTTGAGGTTTGCCCTTTTGCCTTTT
GCCATACGACGATATGCAGAATAATGATGTTGTTAGGGTTTATAGAGCCA
GAGATTTAATATTCTAGTCAAAATGCCTTTTTCAAATTTTAGGACGTTTA
AATTGGTGGACTGAAATGGGTACATGTCGCAAATTATTTCCACTCTTGAC
AGTAGGAGATGGGAATTGTTTATTGCATGCAGCTTCACTTGGAATGTGGG
GCTTCCACGACCGGATGTTGATCCTGCGTAAAGCACTTTATCAAATGTTT
CTAAATCCAATTGCAATTAAAGCATTGAAAAGACGTTGGAAGTATAACAT
GTGGGTTGATAATATGAAGTGCGGTAGGTGAAGGGGGTATTCAAAATATG
TCTACTCAATCAAATAGCTTCCTACTCTTTTCCACACTTCTACATTGCTT
TTAGACAATAGAATACAACATAATAAAAAGCTTTATTCCCTCCAATTGTG
CAAATATTATTCAATCTATTTGAAGCCTCTGAATCACAGCTGTCCAATCT
TGCAGATCACCAAAATTCGAGAGGTATTAGATTAGTAAACCCACTATTAC
AGACTGCTACAGATTCCCAATAAAACATATAATAAAACTTGAGTGAACCT
GCATATTAATTCCGAGGTCCTTCAAACCATAGAAATAATTTGCGCTTTTT
AAACTGATCCCTACACCATCTTGAATCATGTCATAATACATATATTTTGA
AACAGTGTAGTGTCATTATTAGATCAACTGACAAAATATTCATGATATGC
ACCTCAATGCAAATGAATTCAAAATATCATGTAGCTATTCTGTTTTCTTG
CACCTAATATATCACTTGCAACCAATCAGAATCATCTGTCTTTAAAAAGT
GACACAGTTTCAGAAGCCAGGGGTGCATGTCCTGAATGTGGGCTTAAATA
TACAAGAGTCATATAAAATTGTACTAATGTGTTATTTTTCAATACTTTTT
CTTTTGTTTAACCAACAGGTGGTTTGACTTTTACTCGCCAAGAATGGGAC
ACAGAGTGGAACACAGTTGTCGGGCTAACCAGCAATGTCTCACACAAGCT
AGAATCAGACTCTTCACAGAACTGCAAAAGAATAACCCGACAAATTTCAT
TATCAAGCTCTAATTCCGAACTAGAAGAAGGAGAGAGCTTAGATAGTCTT
GAACCAATTCATGTGTACGCACTTTCAAATTTATTGTGTCGACCCATTAT
TGTTCTGTCAGAAGATATGTTAAAGGATGCAGAGGGTCGTCCTATCGCCC
CAATCCCTTTTGGTGGGATATATTTACCGTTAGAGCAAGATGTCAGTAAA
TGTTATAAATATCCTCTCATTTTGGCTTTCGAGTCATCACATTTTTCAGC
TTTGGTACCTGCTGATGGTGACAATTTACATAATGGCGAGAAGTTGTCAT
CAAGTGTGCCATTACAAAACAAAGATCTTGCATTTTTGGATCTCAAATTT
GCAATGGATCCTGGATCAACTTGGGATATGGTTCAGGATGATAGTGTAAA
GGAGGAACGTATGGAATTAACATTACAAGAGAAAATTATTTTATTGCGGA
AATATATGGATGTTGTTAAAGTCCCATCCAAAAAGGCAAAGCCAGCACCT
CCACCAGTTAATGATTTAAGGGTTGGTTCTGTTATTGATCATGTACATAA
TGTCTTAGTTGGGCGACCAGAAAATTTACAACCACCAGCCCCTGAACCAG
ATATAATGCTTGTTTGCGCTAAAATTAGCATGAAGAATCGTCCAAAACAT
TACAAGGAAATGATTCAAAACTTTATTGACACCAAAATGGTTGAAGCTAA
AGAATTACGAGATTTACAAAATCGATGTCCAAATTGTGGTGCTGAAGGTT
TCCCACATTTGAAAGGTTATTGTGAGTGGTGTTTTGAGCGCGCCAAGATG
GTTGGAGGGAAATCACCAAGTCCAAAACAGAAATCGCCCATCAGTACGCT
TGTGAGGAGAACAAACAAATTGCTGATAGGGGAACCTGACAATAACAAAA
ATCAGAAACAAAATTTATTGTGTTCTCCACCCTCACCAAGAACTTCCTCT
AAGACGTTACCAATGCCTGCTAAAAAGAAAGAAAACAACAGCATACCATC
AACACAAAATGTGACCCAAGATGAACCTTTGCCCATGAAATCACGATCAG
CTGATAATATTCACTATCCGCCATCAATGCGAGGTCAGCAAACAAGAGAA
CAGATTATTAGCCAAGAAGAAGCTGGTTTTTATCGCAGTCAATCACTTTC
AAACAGGCCTGAAGTTGCCCCTTTGAACCCTTCACTATCTCGACCACAAA
CTTCAGAGCCCTCATCTCGACCCCAAATATCAAGGCCGTTATCTGATCCG
CAAAATACCAATGAATCACAACCATCAAGACCTCAGACGTCACCAAATAC
TTCATCATCAACTTCACCAGGAGAATTTGTTCCTGGTAAACCATGCAAAG
TGTCTGGCTGTAATTTTTATGGCAGTAATCAAACTTTAGGGTTTTGTTCT
GGCTGTTACAGACAATATAATCATTGAAATTGAAATATTAATGGCTTGTG
TACATTTAGTAAGGTAGAATTTATTTGTAGTTTTTTTTTTACCATAGAAA
GTATTTTTAGTAAAGTGTCTAGTAGAAAATGTATTTAAAGATTCTTTTTT
TTCGTATAAATTTGTTATTAGAAATTAATATTTTTTATTTGGTGGTAGTA
TAAAAATGATTTTTAAGATTTTGACACAGATAATTATCTACTAAGTATCT
TCAAAAGTAAAACAAGTTTTTTTTTTGTCAAATAAGTGTATAAAATTTCT
ATTTAATGATTTTTTTTTAACTCAAGTTTTTTGGTTGTTTTTGTTATTGT
TGTATTTGTAATTATTTCTTATTGATATTCTTGTAGTAAAAACTTATTTA
AATACAATCAATTTCTGAAAAAATCTAATGACAAAGTTGCTCCTCGACTC
TTGTCAAAATTATTTTTCATTTTTTATTGTATCCAGGATGGATGGTCTAG
CTAAAAAGTGAA

Coding sequence (CDS) from alignment at sc0000031:654256..659117-

>TCONS_00003814 ID=TCONS_00003814|Name=TCONS_00003814|organism=Clytia hemisphaerica|type=CDS|length=2301bp|location=Sequence derived from alignment at sc0000031:654256..659117- (Clytia hemisphaerica)
ATGTTAAGAATTCCAAATGAGGAGAAAGCCCCAAATATTCAAATCACCCC
AAGTGAAAGCATTCCAATTTCACCACAAACCAACGAGGAGAAGGTTGTTT
ATTTAGTACGACAGACAGGAATTGAAAAAGAGATTGCTCGTGAATTCCTT
GAATCTAATGGATGGAATCTACAAGAAGCACTAATTGGTTATAAACAACT
TGTTCAACATGAAAAACAAGCTGAGGAGGAGAAACACGATCAAACCAAAC
TCTCCACATATGATTTTGATAAACGGAAAGTCAGCCGTGGTTTTTCTCTT
TCCAACTTCAAAATCATTCAAGATGAAAGAGAAAAGCAAAAAACTCTGGT
TTGTCAAGAAAGTACAACCCAAGATTCTTTCAAAGTTCTTGGCCCTTCAT
CAAGAGAATCGTTTGTTTTGCCAGACATATCAATGCTGGACAAGGATGTG
GCTTATATCATCAAAACAGAACTCATTAGTAAAAGTGCTCTCCATAAGCT
TACCAATGTGGGACGTTTAAATTGGTGGACTGAAATGGGTACATGTCGCA
AATTATTTCCACTCTTGACAGTAGGAGATGGGAATTGTTTATTGCATGCA
GCTTCACTTGGAATGTGGGGCTTCCACGACCGGATGTTGATCCTGCGTAA
AGCACTTTATCAAATGTTTCTAAATCCAATTGCAATTAAAGCATTGAAAA
GACGTTGGAAGTATAACATGTGGGTTGATAATATGAAGTGCGGTGGTTTG
ACTTTTACTCGCCAAGAATGGGACACAGAGTGGAACACAGTTGTCGGGCT
AACCAGCAATGTCTCACACAAGCTAGAATCAGACTCTTCACAGAACTGCA
AAAGAATAACCCGACAAATTTCATTATCAAGCTCTAATTCCGAACTAGAA
GAAGGAGAGAGCTTAGATAGTCTTGAACCAATTCATGTGTACGCACTTTC
AAATTTATTGTGTCGACCCATTATTGTTCTGTCAGAAGATATGTTAAAGG
ATGCAGAGGGTCGTCCTATCGCCCCAATCCCTTTTGGTGGGATATATTTA
CCGTTAGAGCAAGATGTCAGTAAATGTTATAAATATCCTCTCATTTTGGC
TTTCGAGTCATCACATTTTTCAGCTTTGGTACCTGCTGATGGTGACAATT
TACATAATGGCGAGAAGTTGTCATCAAGTGTGCCATTACAAAACAAAGAT
CTTGCATTTTTGGATCTCAAATTTGCAATGGATCCTGGATCAACTTGGGA
TATGGTTCAGGATGATAGTGTAAAGGAGGAACGTATGGAATTAACATTAC
AAGAGAAAATTATTTTATTGCGGAAATATATGGATGTTGTTAAAGTCCCA
TCCAAAAAGGCAAAGCCAGCACCTCCACCAGTTAATGATTTAAGGGTTGG
TTCTGTTATTGATCATGTACATAATGTCTTAGTTGGGCGACCAGAAAATT
TACAACCACCAGCCCCTGAACCAGATATAATGCTTGTTTGCGCTAAAATT
AGCATGAAGAATCGTCCAAAACATTACAAGGAAATGATTCAAAACTTTAT
TGACACCAAAATGGTTGAAGCTAAAGAATTACGAGATTTACAAAATCGAT
GTCCAAATTGTGGTGCTGAAGGTTTCCCACATTTGAAAGGTTATTGTGAG
TGGTGTTTTGAGCGCGCCAAGATGGTTGGAGGGAAATCACCAAGTCCAAA
ACAGAAATCGCCCATCAGTACGCTTGTGAGGAGAACAAACAAATTGCTGA
TAGGGGAACCTGACAATAACAAAAATCAGAAACAAAATTTATTGTGTTCT
CCACCCTCACCAAGAACTTCCTCTAAGACGTTACCAATGCCTGCTAAAAA
GAAAGAAAACAACAGCATACCATCAACACAAAATGTGACCCAAGATGAAC
CTTTGCCCATGAAATCACGATCAGCTGATAATATTCACTATCCGCCATCA
ATGCGAGGTCAGCAAACAAGAGAACAGATTATTAGCCAAGAAGAAGCTGG
TTTTTATCGCAGTCAATCACTTTCAAACAGGCCTGAAGTTGCCCCTTTGA
ACCCTTCACTATCTCGACCACAAACTTCAGAGCCCTCATCTCGACCCCAA
ATATCAAGGCCGTTATCTGATCCGCAAAATACCAATGAATCACAACCATC
AAGACCTCAGACGTCACCAAATACTTCATCATCAACTTCACCAGGAGAAT
TTGTTCCTGGTAAACCATGCAAAGTGTCTGGCTGTAATTTTTATGGCAGT
AATCAAACTTTAGGGTTTTGTTCTGGCTGTTACAGACAATATAATCATTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002126XLOC_002126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003814-exon-sc0000031-1575043694:658876..659117TCONS_00003814-exon-sc0000031-1575043694:658876..659117Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1575043694:657573..657905TCONS_00003814-exon-sc0000031-1575043694:657573..657905Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1575043694:656945..657175TCONS_00003814-exon-sc0000031-1575043694:656945..657175Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1575043694:654256..656299TCONS_00003814-exon-sc0000031-1575043694:654256..656299Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1510915933:658876..659117TCONS_00003814-exon-sc0000031-1510915933:658876..659117Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1510915933:657573..657905TCONS_00003814-exon-sc0000031-1510915933:657573..657905Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1510915933:656945..657175TCONS_00003814-exon-sc0000031-1510915933:656945..657175Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1510915933:654256..656299TCONS_00003814-exon-sc0000031-1510915933:654256..656299Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1491911889:658876..659117TCONS_00003814-exon-sc0000031-1491911889:658876..659117Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1491911889:657573..657905TCONS_00003814-exon-sc0000031-1491911889:657573..657905Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1491911889:656945..657175TCONS_00003814-exon-sc0000031-1491911889:656945..657175Clytia hemisphaericaexon
TCONS_00003814-exon-sc0000031-1491911889:654256..656299TCONS_00003814-exon-sc0000031-1491911889:654256..656299Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003814-proteinTCONS_00003814-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:654256..659117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.1383	20.0295	5.88629	3.60112	33.5142	24.9802	21.8994	22.523	11.9088	17.2889	13.6099	7.40779	10.2832	9.12049	8.78741	9.94595	15.2477	12.6929	7.31139	11.3866	10.4166	10.016	20.2389	19.1703	13.9758	17.0813	14.2939	11.3821	15.1188	14.8568
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002653Znf_A20
IPR003323OTU_dom
IPR009060UBA-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00003814 vs. Swiss-Prot (Human)
Match: OTU7B (OTU domain-containing protein 7B OS=Homo sapiens GN=OTUD7B PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 6.116e-72
Identity = 159/438 (36.30%), Postives = 234/438 (53.42%), Query Frame = 2 
Query:  167 LVRQTGIEKEIAREFLESNGWNLQEALIGYKQLVQ-HEKQ---AEEEKHDQTKLSTYDFDKR--------------------KVSRGFSLSNFKIIQDEREKQKTLVCQESTTQDSFKVLGPSSRESFVLPDISMLDKDVAYIIKTELISKSALHKLTNVGRLNWWTEMG-TCRKLFPLLTVGDGNCLLHAASLGMWGFHDRMLILRKALYQMFLNPIAIKALKRRWKYNMWVDNMKCGGLTFTRQEWDTEWNTVVGLTSNVSHKLESDSSQNCKRITRQIXXXXXXXXXXXXXXXXXXXPIHVYALSNLLCRPIIVLSEDMLKDAEGRPIAPIPFGGIYLPLEQDVSKCYKYPLILAFESSHFSALVPADGDNLHNGEKLSSSVPLQNKDLAFLDLKFAMDPGSTWDMVQDDS--VKEERMELTLQEKIILLRKYMD 1399
             VR TG E  +AR+ LE   W++  AL  ++QL Q H      +  E    ++     F  R                    ++SRG S ++  I+   R    +      + +   ++  P    +F LPD+++ ++D    I+ +LI +S L  L   GRLNWW  +  T ++L PL T GDGNCLLHAASLGMWGFHDR L+LRKALY +    +  +ALKRRW++     N K  GL +T  EW  EWN ++ L S+        +  NC  +           E  E    +SLE  HV+ L+++L RPI+V+++ ML+D+ G   APIPFGGIYLPLE   S+C++ PL+LA++ +HFSALV  +        K  + +PL + +   L L FA+DPG  W+  +DDS  V+   + L+L+ K+ LL  YM+
Sbjct:   12 FVRSTGAEPGLARDLLEGKNWDVNAALSDFEQLRQVHAGNLPPSFSEGSGGSRTPEKGFSDREPTRPPRPILQRQDDIVQEKRLSRGISHASSSIVSLARSHVSSNGGGGGSNEHPLEM--PIC--AFQLPDLTVYNEDFRSFIERDLIEQSMLVALEQAGRLNWWVSVDPTSQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKALYALMEKGVEKEALKRRWRWQQTQQN-KESGLVYTEDEWQKEWNELIKLASSEPRMHLGTNGANCGGV-----------ESSEEPVYESLEEFHVFVLAHVLRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPASQCHRSPLVLAYDQAHFSALVSME---QKENTKEQAVIPLTDSEYKLLPLHFAVDPGKGWEWGKDDSDNVRLASVILSLEVKLHLLHSYMN 430
The following BLAST results are available for this feature:
BLAST of TCONS_00003814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU7B6.116e-7236.30OTU domain-containing protein 7B OS=Homo sapiens G... [more]
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