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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003881 ID=TCONS_00003881|Name=TCONS_00003881|organism=Clytia hemisphaerica|type=transcript|length=3194bpRun BLAST on NCBI protein sequence of TCONS_00003881-protein >TCONS_00003881-protein ID=TCONS_00003881-protein|Name=TCONS_00003881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=951bp MLRKLLEVQRQLIDKTLSTTMGKGKRFFKHKNKKKERDFNQNERIQRPSKRun BLAST on NCBI transcript from alignment at sc0000038:330596..352719+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003881 ID=TCONS_00003881|Name=TCONS_00003881|organism=Clytia hemisphaerica|type=transcript|length=22124bp|location=Sequence derived from alignment at sc0000038:330596..352719+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000038:330596..352719+ >TCONS_00003881 ID=TCONS_00003881|Name=TCONS_00003881|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at sc0000038:330596..352719+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003881 vs. Swiss-Prot (Human)
Match: RNZ2 (Zinc phosphodiesterase ELAC protein 2 OS=Homo sapiens GN=ELAC2 PE=1 SV=2) HSP 1 Score: 329.717 bits (844), Expect = 3.501e-97 Identity = 229/765 (29.93%), Postives = 377/765 (49.28%), Query Frame = 2
Query: 314 NVYFQVIWSGTDGHPPCLFLFTDSKRYIFNCTEGTQRLFTQNRVKIGKLDTFFFTRHQWSHLGGFPGFAMTLRDSTNAANLGQLLATQKPQDVKKKLTVNVY-GPDGIQNVLAAAHGFMKFDKSGMCL-ETHEYGKNKVGKIYEDIELAVQPIPIFGSAPVSASGMSFSRHRLLEPLMP------------SLTHAPPALCFGIHLKPLPGKFDPVRANELGVPSG-----PLRGQLQAGIEVTLDNGTVVKKSDVCDPDIPGTHILIVDCPSISFIDSLTTNNILQKYTVKGEQQAGLVLHLSPQTVCDNPKYVKWIKKFQLETRHTFANNIPHNIPVFRGQYSLQAMLNVVDQNIFPLIEQNVKPEIGKTDIL-----YNLTKIQLRGISSNSVECFDHSSSFKEDKIEKL--QEIAQTALDTFKNQSKETEYELKSDEGRKRQVKENGAESGVTENKKLHLDATPKAKSYPQVLFLGTGAAIPSKYRNVSATLLFLSENNGVLLDCGEDTYGQLFRHYGNKIDNVLKRIKMILISHLHADHHLGLFTLLSR----ISAVKTPDQNVVVVAPYYYRNWFMSYAETSQPL--HCQFVSCRSTLDGSWLTKEIFVKSIK---------------VDHPASAHG-FMVKDKKHSVVYSGDTKPCQRLIQEGQNCTMLIHEATLEDEMFEDALTRKHSTTSQALDVAHQMKAKNLVMTHFSQRYPRIPKLKNTPITSHCAIAFDHMELSLEDVPKFQHYIPKIVQMF 2464
VY QV+ +G+ L++F++ RY+FNC EG QRL ++++K+ +LD F TR WS++GG G +TL+++ L + + + PQ K + ++ GP + H +++ M + + + + + GK ++ + +P+ + +S S S EP +P SL A +C +HLK G F ++A E+G+P G P+ ++ G +T G + ++C P PG ++V+CP SFI + N Q+Y K + LV+H++P +V + +Y +W+++F +T+H N ++ R + +Q LN++ +IFPL+ + G T + L K QLR ++ D I +E AL Q EY + +G K YP+++FLGTG+AIP K RNVSATL+ +S + +LLDCGE T+GQL RHYG+++D VL + + +SHLHADHH GL ++L + ++++ P ++VVAP + W Y Q + H + + +G+ ++ + I V H A G +V VVYSGDT PC+ L++ G++ T+LIHEATLED + E+A+ + HSTTSQA+ V +M A+ +++ HFSQRY ++P L + + +AFDHM++ D P IP + +F
Sbjct: 57 TVYLQVVAAGSRDSGAALYVFSEFNRYLFNCGEGVQRLMQEHKLKVARLDNIFLTRMHWSNVGGLSGMILTLKET----GLPKCVLSGPPQLEKYLEAIKIFSGPLKGIELAVRPHSAPEYEDETMTVYQIPIHSEQRRGK-HQPWQSPERPL-----SRLSPERSSDSESNENEPHLPHGVSQRRGVRDSSLVVA--FIC-KLHLKR--GNFLVLKAKEMGLPVGTAAIAPIIAAVKDGKSIT-HEGREILAEELCTPPDPGAAFVVVECPDESFIQPICENATFQRYQGKADAPVALVVHMAPASVLVDSRYQQWMERFGPDTQHLVLNENCASVHNLRS-HKIQTQLNLIHPDIFPLLTSFRCKKEGPTLSVPMVQGECLLKYQLRP-----------RREWQRDAIITCNPEEFIVEALQLPNFQQSVQEYRRSAQDGPA---------------------PAEKRSQYPEIIFLGTGSAIPMKIRNVSATLVNISPDTSLLLDCGEGTFGQLCRHYGDQVDRVLGTLAAVFVSHLHADHHTGLPSILLQRERALASLGKPLHPLLVVAPNQLKAWLQQYHNQCQEVLHHISMIPAKCLQEGAEISSPAVERLISSLLRTCDLEEFQTCLVRHCKHAFGCALVHTSGWKVVYSGDTMPCEALVRMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAISVGMRMNAEFIMLNHFSQRYAKVP-LFSPNFSEKVGVAFDHMKVCFGDFPTMPKLIPPLKALF 771 The following BLAST results are available for this feature:
BLAST of TCONS_00003881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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