TCONS_00003921 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003921
Unique Name	TCONS_00003921
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1695

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000038:775210..781048+
coding sequence from alignment at sc0000038:775210..781048+

transcript sequence

>TCONS_00003921 ID=TCONS_00003921|Name=TCONS_00003921|organism=Clytia hemisphaerica|type=transcript|length=1695bp
ctagTCTATTTTTGGGATGGCTGCTAATAACAGTTTACATTTTGGCCTTA
TTGTTCTTATATCATAAAACATCAAAGGCTTTCTTTCAAAAGGTTGAATC
TGAAGAAAGCAAACCTGATTCATCGGAGCTTTTAGAAAgCTTATTGCAAC
AAATCAATTTACAGAAGACATATATTGACCAAGTCACAGAAAGCATGGCA
AACCTCCATCAGAATAACAATAATATCACTAAAGTGGAAAACTGTACTTG
TCAAAAACCAAATTTAGAAGAGTATGCTGAAAAAAGTACTATGGAAAATT
TGCAGAAACAGATTCTCAGTACAATTGATGTTGTAAAGAAAATGAACGAG
AGAGTTAATAAAGTTCAAGTTGACGTAGAATTTCAACAAGAAGCCTACAA
AGAGCTTGAAAGTAAAGAAAATGGAAGCAAAGATCTTTGTAACGGCGGGG
ACTGTCTATCTTCATCGCCAAACCTGTTTGAAACAATCCACTCAGCTCTC
GATCACTTCCATGCTGATGTACTGGCCTTACCAGACTTTGCTATGGAGTC
TGCAGGTGGCTCCATCAATATTCCACATCACTCAGAGACTTGTGAAGTTG
GTGCACCAATCATCAAAGTATTTGGCTTACCTCTTTGGCAAGATCCGAGA
TCACCAAGGAATGTTATTCAGCCTGATACAACTCCAGGAAATTGTTGGCC
GATGCAGGGAACAAATGGATACATTGTTATCAAGcttGCAGTCTCAACTC
AAATCACAATGGTTACATTAGAACATTTAGATAGGAAACTTGATCGTTAT
TCCACAAGTCAATATCAATTAGCTCCTAGAGAGTTTGATGTTTATGCTTG
GCTGGACAAGGAGGGCAAAGAGAAATTTCATCTTGGATCCTATGTATACT
TAAGAGAGAAAAGTGCTATTCAAACATTCAATGTTCAGaATTACTATTCC
AAAGCAATCAGTTATGTGGAGCTGAGGGTAAAAAGCAATTATGGAAATCC
TGATTGTACTTGTTTGTATCGATTCCGTGTCCATGGCCTTTCTACAGAAT
GGGATAATTTGGACCAGGAAACGTGAGGATCGTATAATTTCATTGGCATG
ATAATAGTAGAGGTATCTTAGAAACGAGATATTCTTTGGCAGTAATGGAA
TTGTCTCTTGATCAAAGACAAGagtgtttttatcttaaaaactTCTTGAA
TCAAATAAGGGTTCAGCATTTTTAGATATTGACCGGATTTAAGATAgcta
taaaatgaaaacaattgaCCATTCTTTTCAGAGgttatttcttatatttc
ttaCTCTTAGAATAAGAAACTATCGCTAGATTTTCCTTTAGTAGAGGAGA
TTCAGGGGGGAAACTTTTCCCTTGAGATTTTTAAAACACCTGAATAAAAT
GACGTGTAATTTGTTTTTTACTAAAGTTTGTAAAGTTAagagaaaacaga
aaaatattttatagaaattttgtcattatttttttatttcatcttaATTA
CTAGttgtgtatatatttttaaaaactatttATTGTGTGACCCaaaaaag
aattatattttaaatcttgcgtgtaaaaatttgttaaaaaatatttatta
taatgttgaagttgaatttttttattgtattttagtTAGAAATGTATTGA
AGAATGAAAGATATGTTTTTGTTTGGTCTGTCTTTTTCCAGTCGG

Run BLAST on NCBI

protein sequence of TCONS_00003921-protein

>TCONS_00003921-protein ID=TCONS_00003921-protein|Name=TCONS_00003921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
SLFLGWLLITVYILALLFLYHKTSKAFFQKVESEESKPDSSELLESLLQQ
INLQKTYIDQVTESMANLHQNNNNITKVENCTCQKPNLEEYAEKSTMENL
QKQILSTIDVVKKMNERVNKVQVDVEFQQEAYKELESKENGSKDLCNGGD
CLSSSPNLFETIHSALDHFHADVLALPDFAMESAGGSINIPHHSETCEVG
APIIKVFGLPLWQDPRSPRNVIQPDTTPGNCWPMQGTNGYIVIKLAVSTQ
ITMVTLEHLDRKLDRYSTSQYQLAPREFDVYAWLDKEGKEKFHLGSYVYL
REKSAIQTFNVQNYYSKAISYVELRVKSNYGNPDCTCLYRFRVHGLSTEW
DNLDQET

Run BLAST on NCBI

transcript from alignment at sc0000038:775210..781048+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003921 ID=TCONS_00003921|Name=TCONS_00003921|organism=Clytia hemisphaerica|type=transcript|length=5839bp|location=Sequence derived from alignment at sc0000038:775210..781048+ (Clytia hemisphaerica)
ctagTCTATTTTTGGGATGGCTGCTAATAACAGTTTACATTTTGGCCTTA
TTGTTCTTATATCATAGTAAGTTCACTgctattttgtattttgatttcaa
aatcaaCATTTCTTTTAGAAAACTTTAGATATCTTCTCAATTCCCAATCC
TAGATAACATTAAGAGAAAATATCTAACGCAGACCTCTGAATTGCTtcat
aaattgaaattttcatttttcttaactCTCTACAAATCGAACTCTAATCA
AATCAACTACTTTTCCTTCAAACCGTTTTTGTATAAGCAATATAATATCT
TTTGACTTTGTTTCTTTCCTAGAAACATCAAAGGCTTTCTTTCAAAAGGT
ATAAATCATAGCCTgtcttttttattcattagaTCTTTTTCATAAAGCCT
TTCATTTGGAGCTTGTCGTATATTGGGCCCCCAGTGGTTTGCCCGTAGGG
GCTTTTTTGATTGTGTGAATGCctggaaattgaaaaacaatgtgtgaatg
tgtgaattgaaaaaacttgcgtgaaagTGAATATCCACTTTTCAATTGTG
TGAATGCTTGAATTAGCACAATTTTTTGcttgaatacgtgaattttcagt
ttttctgccgattatgtctattatttcaagGGTTTGCAAGAATgcgtgaa
ttttgaaaaaaattgggttattgcgtgaaTCCAGGGTCTGCTGGGGACCT
CATATatcaaattttagtcccatttcttgaaaaaatgtcGATGTTCATGT
AAATAGACCCTTCAATATAAACAATTTACACataaaaaattttatcaatc
atGTCTGTAGGTTGAATCTGAAGAAAGCAAACCTGATTCATCGGAGCTTT
TAGAAAggtaaaatacaatttttcaatCTCAGCAGTTCTAATTTGATTTT
GCCGATGTataccgtaaatcctcgaataagcgcccgcttgaataagcgcc
ccccttagagcctgaaaattaaataagcgcccaggcgcttattcgaggat
ttacggtaaGTGTACTATAGAACCCAGAATTTTTTGCCCGTGCACATAAA
TCTAAAGTAAAGAGGATGAGTCTGCTTTCGGCCATTGATGTAGTAGAATG
AATAGTTAGGGTTGAGTAAATTCTCCTTATCTTTTGTTTCTTCTAGCTTA
TTGCAACAAATCAATTTACAGAAGACATATATTGACCAAGTCACAGAAAG
CATGGCAAACCTCCATCAGAATAACAATAATATCACTAAAGTGGAAAACT
GTACTTGTCAAAAACCAAATTTAGAAGAGTATGCTGAAAAAAGTACTATG
GAAAATTTGCAGAAACAGGTAAGGAAAAGTTTTTCCATGAATATTAGAAT
AGAATATATCAAAATTAAAGCTAAAGTTTGAGCCTTTCTTCCTTCTGATG
GTAAAAAGTTCAGATATTATAaatgtttttagttttctcacaatcttaat
tcaaacttgtacactttttttgaaacacATAGTACTTGAAAGGGTCCAAA
AATCTCAAAGGAAAGTGAGTTAAAAATTTAGTGAAAGATtagcactgcaa
cgacttcttatAAAAGTGCTAATTTTACGAAGAATGGGAGGAATTACTGC
CAAAAGTGGAGCGAACTGAGAAAACAAaattgggattttttttggccATA
TGGGGACCAACTTAGTTGATCGCGTGCACTTTCATCCCTGGTAATCCCAA
CACTTCCTTTCTATCTGCTTTAATTTTAAGCTGCGGATCCGATACTTGGA
AAATAAGTCTTGATTAAAGTGAAAGTCTCCTTGACTAGATTACTTTTCTT
GTGATTATTATCTCTTCTTTCATCTTATAGATTCTCAGTACAATTGATGT
TGTAAAGAAAATGAACGAGAGAGTTAATAAAGTTCAAGTTGACGTAGAAT
TTCAACAAGAAGGTATATTGATTTACAACTACCAGAGTCGCCCATTAAtt
agaaaattaaatgaaaataactgTAAAATAAGATccactttatttttatt
tacaaatcaAAGTTCCACAGAATCTGAGCCCTCTAAATACTCCTTATACC
TACTCCCTTTTGTGAAATCCCAAACTGCACATCATATATAAGATctacgg
atcctgcactaatgtacttcccagttttctcaaaggtaacgaatcgagtg
ggaattgaacccacgacctctcgcttgccgggcgattgctctcccaactg
TACTATCGGTTCGTTGCTATTACACTAGTTCGTAGTAGACGAGGGGAGCG
ACATGCTCATATTCACCATCCGGTACCTGAATCATACGAATCAATGGAAT
TGCTACGACTGAGAAACAGTCAGTGTCCAATCTACAACCAACCCGCTAAC
TAGCAATGGCCAGGCAAGCGAGAGTTCATGGGTTCAATTCCCACttgatt
cgttacctttgagaaaactgggaagtacattagtgcaggatccgtagATT
CATTTATtataagtaatacgcacttgatttcacatATATAAGATCAATTC
ACTTGagtaatcaaaataaaattgattaatttatcAATTGATTATTTTAT
CACTGGGTTGATTTTTTAGCCTACAAAGAGCTTGAAAGTAAAGAAAATGG
AAGCAAAGATCTTTGTAACGGCGGGGTATGATCAAGTTACCTTTATACAA
CCTTACTTTTCtattctatttggttgagtcgcaGGAGACTTTTAaggccc
attttcgcaactatagacccTTTCAATTAGCGCCCCGttagcaccttgaa
ctgactaccccattcccctcacatggcatgggttgacccaggcGAAGGTT
CTTTctcttgccaagtgaaccgttgtgagtgggaatcgaacctcagtcgc
cggtgtagcaaccaaggtcaatgatcactataccacagcgcccttttttt
attagaaattgtTCAGCATTGTATTAAATAGAGATTCATTTCTCCCATTA
TGTACGCTTATACagatttcaccattttttatactttattaGTGTTTCCA
ATCATTcaagatatttttctttctttgtataCTTCAAGGACTGTCTATCT
TCATCGCCAAACCTGTTTGAAACAATCCACTCAGCTCTCGATCACTTCCA
TGCTGATGTACTGGCCTTACCAGACTTTGCTATGGAGTCTGCAGGTAACA
GACTTTCTTTTTAATGGTATGATAATAACAACACCCATTTTTCAACTGTC
AGTTTATCACGTCTAAAAGTTTTACGTCAAACCCACTCAGTTCTCCCTCA
actgggcttttccagaaaagatttgaataattATGGGGAAAGGtaacttt
ttttaagaaatttccccccccccccgacagggcaaattttgtagattttt
cactacccccggacactatatcctccaccttCATGTAAGTACATTTTCTG
GAAGACCCCATTGCTCCATTTTTAAGAATAGGGAAGTTTATCAGTTACAA
CTGATATCAAAATGACTTGATCTAGTTGATTATAGTATTTCTACTCTATA
GAGTTAGCAATAGCCTCaagtcaaaaattaaaaatcataaTCTAATGTTT
CCATGGCAGTCAATAATATCCTCTGGGCCTCGTCagtattttattcaaat
tttaagccTGTAATAAAAGTAACCCACAATTGAATGATGACTCTATGAAT
CTTCAGGTGGCTCCATCAATATTCCACATCACTCAGAGACTTGTGAAGTT
GGTGCACCAATCATCAAAGTATTTGGCTTACCTCTTTGGCAAGATCCGAG
ATCACCAAGGAATGTTATTCAGCCTGATACAACTCCAGGAAATTGTTGGC
CGATGCAGGGAACAAATGGATACATTGTTATCAAGGTTTCTTTTATTTAT
AATGCTTTTTACATTAATAAGTTTGAAAAGGGACAGTGAACTCTAGACTT
GATTGAATTTCCCCTTTTAGCCCTTGTGCTGCCAAAGGCTAGAAAATAGT
GAACAAGTGTAACGAAGAGAGgcaaacaaaaataaatcaatttaattCAC
TAATGAATGTTGAATCAGAATTTCTAGCTGTGTAGTTAAAtgttttgaat
aaattaacATAACTAACCTCTGAAAGAATAAAATCCAAttgaaaatgtat
tttctttctgCAATAGTTAACTtcttattgttattattaatatatttttc
agcttGCAGTCTCAACTCAAATCACAATGGTTACATTAGAACATTTAGAT
AGGAAACTTGATCGTTATTCCACAAGTCAATATCAATTAGCTCCTAGAGA
GTTTGATGTTTATGTAAGAAACTGATCACTTTTgacttttgacaattttt
tttcagggcttcttttatgttttatctAATATGACAATAAAATGTCGCCT
TATCATTGAAGAATAATGGACGActtttcaaaatctcaaaattttcgaga
aaaaaaaaagcaatAGAAGGGTTTCTGTTGACATCGTTTGATTTGGGGGT
TTTACTCAGTTTTGCCTCACTTACATCAAGCTTGGTTGGGAAAAGTGTTT
AAATCTGACACTGGAATATCATATCAAGTACAAAGTGAGATCATTGCACT
GCAGTAGAGCCCCAAAGTGttacaaaaattacaaagaagGAAACCCCAGA
AATCCCAATCAAGAACAATTATATTATTTTGGTATCCCAAAGTTATTCTA
TCTTCACCTTTTTCTAGGCTTGGCTGGACAAGGAGGGCAAAGAGAAATTT
CATCTTGGATCCTATGTATACTTAAGAGAGAAAAGTGCTATTCAAACATT
CAATGTTCAGGTATATAGCATGTAGAGATAATGAGTAATAAGATAATGAG
ATAGTAAGTAGCTCAAAGCATATTTACACCCATTCAATGAAGCATTATCA
ACAAAGTTCCTTAGGACCTAGTACCGAAAGACCTTTGATTTAGGCCTTTA
AAATTCTAAAAGTAAGCAGGTTAAGCGTATCAGTGTGTCAACTTATCATA
CCATAAAAAGGTTTGTAATTCAATATTCGCCTGCAAGTTTGGGATGAGAT
ATCAAATTACAGTTGTGTGTGCTCTTCTTGTTATTTATTCTAAGATTGTG
TCAATAAtctaagttgttttttttatatatagaATTACTATTCCAAAGCA
ATCAGTTATGTGGAGCTGAGGGTAAAAAGCAATTATGGAAATCCTGATTG
TACTTGTTTGTATCGATTCCGTGTCCATGGCCTTTCTACAGAATGGGATA
ATTTGGACCAGGAAACGTGAGGATCGTATAATTTCATTGGCATGATAATA
GTAGAGGTATCTTAGAAACGAGATATTCTTTGGCAGTAATGGAATTGTCT
CTTGATCAAAGACAAGagtgtttttatcttaaaaactTCTTGAATCAAAT
AAGGGTTCAGCATTTTTAGATATTGACCGGATTTAAGATAgctataaaat
gaaaacaattgaCCATTCTTTTCAGAGgttatttcttatatttcttaCTC
TTAGAATAAGAAACTATCGCTAGATTTTCCTTTAGTAGAGGAGATTCAGG
GGGGAAACTTTTCCCTTGAGATTTTTAAAACACCTGAATAAAATGACGTG
TAATTTGTTTTTTACTAAAGTTTGTAAAGTTAagagaaaacagaaaaata
ttttatagaaattttgtcattatttttttatttcatcttaATTACTAGtt
gtgtatatatttttaaaaactatttATTGTGTGACCCaaaaaagaattat
attttaaatcttgcgtgtaaaaatttgttaaaaaatatttattataatgt
tgaagttgaatttttttattgtattttagtTAGAAATGTATTGAAGAATG
AAAGATATGTTTTTGTTTGGTCTGTCTTTTTCCAGTCGG

Coding sequence (CDS) from alignment at sc0000038:775210..781048+

>TCONS_00003921 ID=TCONS_00003921|Name=TCONS_00003921|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000038:775210..781048+ (Clytia hemisphaerica)
agTCTATTTTTGGGATGGCTGCTAATAACAGTTTACATTTTGGCCTTATT
GTTCTTATATCATAAAACATCAAAGGCTTTCTTTCAAAAGGTTGAATCTG
AAGAAAGCAAACCTGATTCATCGGAGCTTTTAGAAAgCTTATTGCAACAA
ATCAATTTACAGAAGACATATATTGACCAAGTCACAGAAAGCATGGCAAA
CCTCCATCAGAATAACAATAATATCACTAAAGTGGAAAACTGTACTTGTC
AAAAACCAAATTTAGAAGAGTATGCTGAAAAAAGTACTATGGAAAATTTG
CAGAAACAGATTCTCAGTACAATTGATGTTGTAAAGAAAATGAACGAGAG
AGTTAATAAAGTTCAAGTTGACGTAGAATTTCAACAAGAAGCCTACAAAG
AGCTTGAAAGTAAAGAAAATGGAAGCAAAGATCTTTGTAACGGCGGGGAC
TGTCTATCTTCATCGCCAAACCTGTTTGAAACAATCCACTCAGCTCTCGA
TCACTTCCATGCTGATGTACTGGCCTTACCAGACTTTGCTATGGAGTCTG
CAGGTGGCTCCATCAATATTCCACATCACTCAGAGACTTGTGAAGTTGGT
GCACCAATCATCAAAGTATTTGGCTTACCTCTTTGGCAAGATCCGAGATC
ACCAAGGAATGTTATTCAGCCTGATACAACTCCAGGAAATTGTTGGCCGA
TGCAGGGAACAAATGGATACATTGTTATCAAGcttGCAGTCTCAACTCAA
ATCACAATGGTTACATTAGAACATTTAGATAGGAAACTTGATCGTTATTC
CACAAGTCAATATCAATTAGCTCCTAGAGAGTTTGATGTTTATGCTTGGC
TGGACAAGGAGGGCAAAGAGAAATTTCATCTTGGATCCTATGTATACTTA
AGAGAGAAAAGTGCTATTCAAACATTCAATGTTCAGaATTACTATTCCAA
AGCAATCAGTTATGTGGAGCTGAGGGTAAAAAGCAATTATGGAAATCCTG
ATTGTACTTGTTTGTATCGATTCCGTGTCCATGGCCTTTCTACAGAATGG
GATAATTTGGACCAGGAAACGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002196	XLOC_002196	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003921-protein	TCONS_00003921-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000038	supercontig	sc0000038:775210..781048 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
48.4656	44.9567	200.551	210.701	7.98469	6.28416	5.03392	5.20121	4.76814	6.77832	5.3456	4.40441	3.7314	3.24848	3.33498	3.88446	8.19064	8.98298	3.04551	2.52297	5.28609	5.10045	11.3055	9.95485	16.1233	16.9747	4.81232	3.7034	5.03481	3.80676

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR012919	SUN_dom
IPR008979	Galactose-bd-like

Blast

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BLAST of TCONS_00003921 vs. Swiss-Prot (Human)
Match: SUN2 (SUN domain-containing protein 2 OS=Homo sapiens GN=SUN2 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 3.301e-39
Identity = 72/184 (39.13%), Postives = 109/184 (59.24%), Query Frame = 3

Query:  486 IHSALDHFHADVLALPDFAMESAGGSINIPHHSETCEVGAPIIKVFGLPLWQDPRSPRNVIQPDTTPGNCWPMQGTNGYIVIKLAVSTQITMVTLEHLDRKLDRYSTSQYQLAPREFDVYAWLDKEGKEKFHLGSYVYLREKSAIQTFNVQNYYSKAISYVELRVKSNYGNPDCTCLYRFRVHG 1037
            +  AL  +  D + L D+A+ES G S+     SET E    ++ +FG+PLW   +SPR ++QPD  PGNCW  QG  G+ V++L+   + T VTLEH+ + L   ST     AP++F ++ + +   +E   LG + Y ++   IQTF+ Q         VELR+ +N+G+P+ TC+YRFRVHG
Sbjct:  532 VKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNST--ISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGHPEYTCIYRFRVHG 713

The following BLAST results are available for this feature:

BLAST of TCONS_00003921 vs. Swiss-Prot (Human)

BLAST of TCONS_00003921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SUN2	3.301e-39	39.13	SUN domain-containing protein 2 OS=Homo sapiens GN...	[more]

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TCONS_00003921 (transcript) - C. hemisphaerica