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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004040 ID=TCONS_00004040|Name=TCONS_00004040|organism=Clytia hemisphaerica|type=transcript|length=3824bpRun BLAST on NCBI protein sequence of TCONS_00004040-protein >TCONS_00004040-protein ID=TCONS_00004040-protein|Name=TCONS_00004040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1215bp MPDRKFTTLRKRLDQLGYRQPLVIEAVPLVEKLFSDLVHTTESFKNYKSRRun BLAST on NCBI transcript from alignment at sc0000039:473243..504051+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004040 ID=TCONS_00004040|Name=TCONS_00004040|organism=Clytia hemisphaerica|type=transcript|length=30809bp|location=Sequence derived from alignment at sc0000039:473243..504051+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:473243..504051+ >TCONS_00004040 ID=TCONS_00004040|Name=TCONS_00004040|organism=Clytia hemisphaerica|type=CDS|length=3648bp|location=Sequence derived from alignment at sc0000039:473243..504051+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004040 vs. Swiss-Prot (Human)
Match: CP135 (Centrosomal protein of 135 kDa OS=Homo sapiens GN=CEP135 PE=1 SV=2) HSP 1 Score: 527.709 bits (1358), Expect = 2.169e-165 Identity = 379/1157 (32.76%), Postives = 679/1157 (58.69%), Query Frame = 2
Query: 59 DRKFTTLRKRLDQLGYRQPLVIEAVPLVEKLFSDLVHTTESFKNYKSRPQRLDESLTDLS---EPYKNDNARLVKENNDLHKDVIKCKDEIDKLALEMKSAVNKLENENQDLKFLNTQYVYTIKNMEKEAKLKSEHILTLEERNMNAVVETPGGRRKNIPFRRQRMDLESTLPQPSFSTTFANDSKIQVEDPYVVDLLTVADNQMQNYKQEIFDLQGVNSRLDKQCKLYKKQVESREREIERLNRQLDGGRPXXXXXXXXXXXXXXXXLSHLNIQVDYLQQANQDLEKKISNFELSKKESTEKVKNLQERNDELCTELAAMDKVYQNLGKEKQKNDHEVDGQMLSLQNEVDEQKQRIVDLQSNLHNLKKERDGLIEEIEHMNIAHKDMNIDKDNLLHLYEKCEKEKKRLADKNARLTVAERELAMELERVKISKGMLPK-KSPDQLRYLIRNLEDDRDHYRKELESLQKMVHQRLFSKSNIRSESKQQEGNAIIQLLQEERDYFKKEYELVRSKGTSQPMSPPTKDRTAKMDSDEFSRVQRERDELQKMLATFEKHLAKITENVKSVTTERDNIQLLYEQAIEEVQKLRRKQSKNLSPSRKITSILEKAEKERDEALFELRKTRSEIQNMKLEIKQLQRTYDSERQQHHDQQRNTEDLLDKMDNDNNVLTNQMSSTQSVVHTLETQLSKANKTVRKHQDXXXXXXXXXXXXXXXXXQSQKTQDDVRRKYEEKMALIGQLEDQNTDFQDDVARMERKVREYEEEISRLKSVASSLDHARDVLQQEVDEKSEELVKLDDGLREQEKADNXXXXXXXXXXXXXXXXXXXXASKDREINALQKQIHTIEGELVGVSKTRETTIRENKKILDDLTLMTENNQAIHEKLRDRTSECQALKQQIEDYAMHVGRVEDMLAQXXXXXXXXXXQYKSLNTKAIELESNAQQSEDGHENAKQNLQHCQQEVVYLQEKCSVLESQIEQHINNEESYESQVNEFIKSVADLQNQLAATNTEKDTVIEDLYAVRELCVRLDQTREDLTKKLANKTNENEKLEDILSETRAESNALRNQVAHESSNIRNLENVISTTREKQILEK-TLHQKESMHLERIRTELEKCEREKTNQEREVQNLRKENVSLHEEVSSLKSHLTSEKFELERMKQEF 3514
+RK+ +RKRLDQLGYRQ L +E +PLVEKLFSDLVHTTES + K + ++ + EPYK +NARL +ENN+L+ +++K ++ D+ E+K+++ K E DLKFLN QY + +K +EKE+K K+E I L+E+N++AVV+TPGG++++I FRRQRM ++ +P PS +++ Q +DPY+ DLL VADN++Q +QE+ LQ + ++ + Y KQ+E REREIERL+ LDGGR + + E + +N K+++HLNIQVD+LQQAN+DLEK+I +K+ T +V NL +N++LC EL +D++ Q L + K++ D ++ + E+ + + DL+ + L+ E + +E E ++ D + K +L + + E+EK+RL+ K V ER+L +E+ER+++ G+ + +SP +L ++ +E++RD+Y+KELE LQ ++ +R S S +E ++I + E+ DY + E ++ RERDELQ+ML FEK++ I NVK +T ERD + +LY +A EE+ LR++ ++ +P I S++ EKE++ AL +LR+ +E + ++ +++ ++ + + + + +++++ L +++ + + +LE +L + + +++E++ ++++ EQ Q++ DD + + K + + Q ++ + + K+ +EE +K +D +D LQ+ VDEK+E++ L + L +EKA ++K+ + E E ++ +E L ++DREIN+L++Q+ EL V ++RE +EN+++ DDL M NQ I +L E + +K ++ Y V R E ++A KE E ++LL +++ L+ +A + E A Q+E + + L E +L+E+ +LE +I++HIN +YESQ++ K+++ L+ +L EK TV+ DL ++RELC++LD ++ +T++L +K E E++ L ++ES+ L+ Q+++E ++NLE++++T R+K+ T H+K++ ++ ++ +L E + T+Q RE LR + L + +LK +++E++E ER QE
Sbjct: 6 ERKYINIRKRLDQLGYRQTLTVECLPLVEKLFSDLVHTTESLRQSKLSAVKAEKESANFDFVLEPYKLENARLSRENNELYLELMKLREHSDQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNERIQQLQEKNLHAVVQTPGGKKRSIAFRRQRMQIDEPVP-PSEVSSYPVP---QPDDPYIADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSPDVLSLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLS----DELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTS-----YSAREKSSIFR-TPEKGDY-----------------------------NSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAP-HNIVSLM---EKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNRDKEFHSHLTSHEKDT-EIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEM 1114 The following BLAST results are available for this feature:
BLAST of TCONS_00004040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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