TCONS_00004054 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004054
Unique Name	TCONS_00004054
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2074

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000039:590343..596556+
coding sequence from alignment at sc0000039:590343..596556+

transcript sequence

>TCONS_00004054 ID=TCONS_00004054|Name=TCONS_00004054|organism=Clytia hemisphaerica|type=transcript|length=2074bp
CACATTGCCTAGATTCTTTTGGGATAAAGTTGTTTTCAAAGGGTTTTTGG
AATCAATTATCAGAAGAAAATTGCATAACTTTAGCCCCGGCCATCTAAAA
GCGTCAGCGATTGTGTTGCGATGTTGTATCGTAGTTTTGTGGAttggttt
ttcaatttttgaagatGAATACCTCTACTGAACATGAAGAACTAAAGACT
GGGAGCGAGTCTGCTTTAGACCAACAACAACATGTTTCACCGGAAAACAC
CCCAATTGAAAAAGAGATATTACAACATGAACAAGACAATAcgcatgaaa
atgaaaaagacgaACACGGCAcaaatttgtccgaaaatcagaTAGCGTCC
GATAGTAAAGAGATAGAAATAATTGATATAGATGAATTTTTAATACGAAC
TAAAGAATGTGGTCTTTCACAATTCGCAATAGTGTTGGGAATGATGTTAG
TGACGTTCACGTTAGCATATACACCCTTCATCTTCTATTTCATTGGTTTT
GACCCACATTGGATCGACACGGAGAATGGAACAGCTCATTATAGGGAAGA
TAATTCCAGATGTTTTCTTAATGAGTCTCAATGGCGGTACGATCATGAGA
AAACCACAGTTGTCACAGAGtatgGTTTGATTTGCGATAAATCCTGGATG
TTATCAATGTTGGGATCCATTGTGTTTGTTGGATGGGCTTTGGGAAGCTT
CGTCTTTGGATTTTTTTCGGATAAATATGGTAGAAAATTAGTCATGATAC
CCTGTTTATTTTTTGATCTCTTCTGTTTATTTCTTCACGGATTCATTTCT
TCAATATGGGTTCTAATGGCTGTTCGGTTCATTATGGGATTCTTTCACGC
TGCTCCTGCCATCAATTCTTATATATTGATCGTGGAACTCATTGGTCCAA
ATTATCGAGTGCTTGCAGCGAACGTAGCTGGCGTTGTATGGGGTATCGCC
ACAGCTGTATTAGCACTGAAAGCATTTCTTATAGATGATTGGCGTAACCT
ATGTATTGCAGCTTCTGCTCCTTACTTTGTCTTGGTGGTATTGGGAATGT
TTCTCCCTGAATCAGTACGCTGGTTGAATGCCAACGGAAGATCAGAGGAC
GCAGAAAAGATTTTACACAAAGTGGCAAAATATAACAAACGAACAATTGA
GAATGTTTGTTTGAAACAAGAAGTTGAAGATCAAAGTGGATATTCATATC
TTGATCTTTTCAATACAAGAAAAGTTCTGAAAATCACATTATCACAGGCC
TACATTTGGGGGTGTCTTGGAATGGTATATTATACATTGTCATGGGCGTT
TGCAGATCTGGGAGGTGACATGTATCTGAATTTCATTTTGGCATCGATTG
TGGAATTACCGATGCACGCTGCTTGCGTTATTTGTCTACAAAGtttcGGA
CGCAAACGTACAGTTGTGGTATCGCTCTTCCTCACTGTAGTATTCACGTT
GGTTATCATGATTCTCATTTACTTGCAAACAAAACATGAAGaaatcaaat
TGGTGTTTGGTTTGTTGAGTAAATCATGCATTTCGTTAGCTTTCATGTCT
TCGTACATGTGGTCCGCTGAAATCTTCCCAACCGTCGTTAGGACGCAAGG
GTTAAGCTTCAACATCGTGACGAGTCGACTTGGAGCTGCTGTGTCACCTT
TTACAAACAACCTGGACTTGATCCATCCTATTTTACCATTCTTCGTAATC
TGTGTATCAACAATAGTTGCGCTTTTCATGTGTCTCTTCCTTCCCGAAAC
GCTGGGAAAACCAACGAGGGAGAAATTCGAGGATATCTATGACGATTGAG
AAACTTGATATCtgcgaaaaaaaagaagaatggaAAATTTATTTCGTTTG
ATATTTCTCTGCATTGTCGATCTTGTAATAGGTTTCAGGGTTGAAAAAGT
TCAAGAGCTGTAAAAAACTgaagatcttatttttttggcattaACCCCTT
ATATTCGAAGAGGTTGGCCAAATAATTAATTGGAAAGAGTGTTATAAAGA
TTGGTATTTTAAGtactaaaatcaaaatatttttctagaaattaTTTAGT
GTGAGGACGCTCACTAGGTAGGCT

Run BLAST on NCBI

protein sequence of TCONS_00004054-protein

>TCONS_00004054-protein ID=TCONS_00004054-protein|Name=TCONS_00004054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=544bp
MNTSTEHEELKTGSESALDQQQHVSPENTPIEKEILQHEQDNTHENEKDE
HGTNLSENQIASDSKEIEIIDIDEFLIRTKECGLSQFAIVLGMMLVTFTL
AYTPFIFYFIGFDPHWIDTENGTAHYREDNSRCFLNESQWRYDHEKTTVV
TEYGLICDKSWMLSMLGSIVFVGWALGSFVFGFFSDKYGRKLVMIPCLFF
DLFCLFLHGFISSIWVLMAVRFIMGFFHAAPAINSYILIVELIGPNYRVL
AANVAGVVWGIATAVLALKAFLIDDWRNLCIAASAPYFVLVVLGMFLPES
VRWLNANGRSEDAEKILHKVAKYNKRTIENVCLKQEVEDQSGYSYLDLFN
TRKVLKITLSQAYIWGCLGMVYYTLSWAFADLGGDMYLNFILASIVELPM
HAACVICLQSFGRKRTVVVSLFLTVVFTLVIMILIYLQTKHEEIKLVFGL
LSKSCISLAFMSSYMWSAEIFPTVVRTQGLSFNIVTSRLGAAVSPFTNNL
DLIHPILPFFVICVSTIVALFMCLFLPETLGKPTREKFEDIYDD

Run BLAST on NCBI

transcript from alignment at sc0000039:590343..596556+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004054 ID=TCONS_00004054|Name=TCONS_00004054|organism=Clytia hemisphaerica|type=transcript|length=6214bp|location=Sequence derived from alignment at sc0000039:590343..596556+ (Clytia hemisphaerica)
CACATTGCCTAGATTCTTTTGGGATAAAGTTGTTTTCAAAGGGTTTTTGG
AATCAATTATCAGAAGAAAATTGCATAACTTTAGCCCCGGCCATCTAAAA
GCGTCAGCGATTGTGTTGCGATGTTGTATCGTAGTTTTGTGGAttggttt
ttcaatttttgaagatGAATACCTCTACTGAACATGAAGAACTAAAGACT
GGGAGCGAGTCTGCTTTAGACCAACAACAACATGTTTCACCGGAAAACAC
CCCAATTGAAAAAGAGATATTACAACATGAACAAGACAATAcgcatgaaa
atgaaaaagacgaACACGGCAcaaatttgtccgaaaatcagaTAGCGTCC
GATAGTAAAGAGATAGAAATAATTGATATAGATGAATTTTTAATACGAAC
TAAAGAATGTGGTCTTTCACAATTCGCAATAGTGTTGGGAATGATGTTAG
TGACGTTCACGTTAGCATATACACCCTTCATCTTCTATTTCATTGGTTTT
GACCCACATTGGATCGACACGGAGAATGGAACAGCTCATTATAGGGAAGA
TAATTCCAGATGTTTTCTTAATGAGTCTCAATGGCGGTACGATCATGAGA
AAACCACAGTTGTCACAGAGGTAAACAAATTGTTTAGTTTCATTTGATTG
CCTTTACAATATCCATACATCATGATTAACTAAAATAGGGAGGACAAAAG
ACAGATCAGACAGAatctcatttttttgaaaaaagtagccacgagaagtt
ttttcgcgttggtgcaatgcaacatgctctatcccaccaacacaagaaaa
aaagtgcgtgtctcatggtttcttttttgtttcatgggacaaaaagtgag
ggaaatacccaaaagacacgctgattttgtcccttggacaaaagtgagag
aagcaTTTAtgttatcaaaagaaaaatggggttgagacacgagaaagcgt
ttcaggttggtgggatggagcatgttgcattgcaccaacgcgaaaaaaaa
ttctggTATCCCATAGCCTTTACTGTCAAGAATTATTGTGAAAAAATCCC
TTGGTAGAAAATTAAAATCCTCCCTGGTGATACGTTTACTTTATCTAAGA
ACTCAAACAATAACACCTACCacttttcttattcttttatagtatgGTTT
GATTTGCGATAAATCCTGGATGTTATCAATGTTGGGATCCATTGTGTTTG
TTGGATGGGCTTTGGGAAGCTTCGTCTTTGGATTTTTTTCGGATAAATAT
GGTAGAAAATTAGTCATGATACCCTGTTTATTTTTTGATCTCTTCTGTTT
ATTTCTTCACGGATTCATTTCTTCAATATGGGTTCTAATGGCTGTTCGGT
TCATTATGGGATTCTTTCACGCTGCTCCTGCCATCAATTCTTATATATTG
ATCGTGGAACTCATTGGTCCAAATTATCGAGTGCTTGCAGCGAACGTAGC
TGGCGTTGTATGGGGTATCGCCACAGCTGTATTAGCACTGAAAGCATTTC
TTATAGATGATTGGCGTAACCTATGTATTGCAGCTTCTGCTCCTTACTTT
GTCTTGGTGGTATTGGGAATGTAAGTTAATCTTATCTAACTCTATGAATT
acttttttagctatttttttttctttaaagatacCATAACGAGAAAATAA
CGAGTCTTATGGGAGTAGTTTTGATTGAAGGGGAgctttgacaaaatatc
aattttgtcTCCAAATAGCAGATGCTATTTGACAATAACTCATAATATCT
GTCGAGCTCATTCTTAGGATTCGGATGATTTCCACCTTGACATTCAAGTC
TCATACTATAGAGATTCTTGGTTGGACATCTTCCTCTAAAGACGTTTCTA
GAAACTTCCTTATTCAAAATAATGCAATGTTTTCCAGGTTTCTCCCTGAA
TCAGTACGCTGGTTGAATGCCAACGGAAGATCAGAGGACGCAGAAAAGAT
TTTACACAAAGTGGCAAAATATAACAAACGAACAATTGAGAATGTTTGTT
TGAAACAAGAAGTTGAAGATCAAAGTGGATATTCATATCTTGATCTTTTC
AATACAAGAAAAGTTCTGAAAATCACATTATCACAGGCCTACATTTGGTA
CGTGTTTTGTCTTTTTACAATATCTTTTCGCCATACATGTTTTATATAAG
CAAGtaatatcaggctcgcattattcTTAAAATTCTATTGAGAGCCATTA
TTTTGGTAGCAAAAACTGAGCacgcatatgcttataaacgtttcATTCTT
TAGGACTCGGGACACTTGGGCAATTTCAGggggaatttttttcattctaa
agaagaattttttcaaaaactgttttGAGAGTGGGTAATCAAATAATGTC
CAAAAAATTTGTTATGGGCTAAAACAGACGTCACAAGCGAAAATCCTTGG
GACCCGAAATTTGACGAAAATTCAAAAGTCGCTAAATTCTAAAACCACTT
ATACCATTAGGATATTCTCGAAAAAACAATACCATAGAGGAATTTTAGGC
GGATATGGTCGAATTTTCAACGTAACTCGAGAGAAACGGCGTCAAAGTGA
CGTTTTCTAAATGTTTGGCGTTAACCTTATACTACCAAGTTATACTTCTT
GAAATTACCCCTTCATTCGAATTGATTTGTGCATGTCCAAATTATATACT
TATACCAttggaaagctctcgaaaaacgaTATGGAGGACTTTTAAAGCGA
ATATATGGTCGATATCTCAACGTAACTCGAGAAAATGAACGCCAACATTT
AGAAAACGTAACTTTGACGCCGCTTCTCTCGAGTTACTCCGGAAATTGTC
GTCCCGGGTCCTAAAGAATTATATTTGTGAAATGTTtcaatttgtactag
taatcgtatggtttggagtgcaattaacgattaatcacgagtaacaaagg
agaaaatagtaatttgcacgagtccgaaggacgaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagt
gattaatcgttaattgcacgacaaaccatacgattccgaggtaatcgtca
gtaaataatcattagtaaatcatagtttctttagaaaaagggaaaatttt
tgacattcgaaTTGCAATGCAACTTATGTACACAAAGcgaatttctttgt
tcttttttatattggagaaaaaaaatgtctttgttttttattatatagta
aaaaaaagtctctgacacaggacttgggacaaaaaagaataaggggacaa
aagtgtccccccgccgaagagtgcaaaaagtggtaatagtgcaattaacg
attaattgcactcctctaaaccaatcagattcgagtaattttgcacggct
gacgattactaTAATAACTTCTACATTTGTTTCAGGGGGTGTCTTGGAAT
GGTATATTATACATTGTCATGGGCGTTTGCAGATCTGGGAGGTGACATGT
ATCTGAATTTCATTTTGGCATCGATTGTGGAATTACCGATGCACGCTGCT
TGCGTTATTTGTCTACAAAGGTATACTTCAATTTGCATTTTTGATGATTT
GGCTCTAGATTAGATACTTATTTCTCGACCGTTTGGCTAGGGCTAGTCCT
TCTTAAGCTTCGAAGATAACGTTAAAAAAGGGTCACCCTTTAAAAGGTGA
TAAGCCTATTCCTAACagaatctttcttttttgtttttagtttcGGACGC
AAACGTACAGTTGTGGTATCGCTCTTCCTCACTGTAGTATTCACGTTGGT
TATCATGATTCTCATTTACTTGCAAACAAAACATGAAGGTAGGACCTATA
TACAACCGTATATTTTGTGCCAAATCCTATACACCTATACCCTTAGCGGC
GCGGTCGGCTTTTTCTAGGGACTTGTTATGAAGTTACAAGGACGATTTGT
TCTCGACACACGGTATTTCGCTGAGGGTAGATAGGTGTATACaaacttta
ttcaaattttaaaaacgtttttttatttcaactatCGAAAACAATAAACC
AAAATATGCGGAATttgtaattaaaattttaacgtGGATTTTAAAAAGAT
CTTACTCATAGATGGTAGCGGGCCGGTTATATAATAATTTTAACTTCTAC
TACAGTGCTCAAATATTTTTCTACCTAAGATAGGGATTAACTGGGGCAGG
AAAATTTAGTATATATTTGTTAACTTTTCCCCcttttttcagaaatcaaa
tTGGTGTTTGGTTTGTTGAGTAAATCATGCATTTCGTTAGCTTTCATGTC
TTCGTACATGTGGTCCGCTGAAATCTTCCCAACCGTCGTTAGGTAAAAGT
CCTTCTTTCAAATGCacgttattttataagaacataaacttttgaagcct
cgcgatgttcttaactttttcagttttaagcctaataatgttcttaacat
gttcttatattCCTAAGTTTTTTagtaaattttccctttttcgtAAGAAA
TCGCGGGTATTCgggagtccgcaaagccttgaattgtaattaacttttta
ctaatattttggcaattgaagccttatgttcttatataatttatttgtaa
aaaaacgtgtaggaatATTTGTTTGACTGCAGTTAGCCCCTGGTTCTCCC
ATTTTCACGCCTTCTTCGATTTTTACGGAAAACACCTCGCAGCAAACTTT
TTTTAGTAATTGTAAAGTTTGAGGGTGCAAGAATTTTAAAGAGGAGTCCA
GTTAtctttttaaaactgttttcatTGTTATTGTTACGGGTTATGGCTAT
ACCTTCATAACATAAATGAATTAGTTATATAATCGACCAAAGTCTCGTGA
AAATGACAACAGTTAACATGATTTAAGTATTGTTATTAAATTTTCTGTTC
TAACAGCTTATGTAGATCATTTTGACACTAAGCCATCTCCTTTCAGATTT
GATTTATTCCAGACAACTCCCGTGTTTTTTCCACTGTTTTTCTAATTATG
CCCGGCTCTATGAGACGATCTATTTCTTAGTATATAAGTGAGTCtgtgac
cgcagtcggaggcgacgcaaaggctcctctttcgatagctattacccgaa
ggtagggaagGGGGCCACTCTCtctctccctggatttctccacttaccct
cgatcccaacctcgttccctgcgcattatcagctttttgatgattACTGA
TAgcgcgtcaatcagtaacgtaaataaagcctgggatacacgggacGAGG
TTGCCTCGATCCTTCTcctaattgctgagcatcaagcagagaggcatcat
gTTCCATTTTGAGGATCTTTGGCATGACCCGACTGGGGTTTGATCCCACA
ActttgcgaaccgtagccggatgctctaccaccgCACCACGGTTCGCTTT
TCGCATATTTCTTAGTAAACGTCTGAGTTGGAAATAATTTTATTATGAAC
TGTTGACACCCCTTCGTCCATTAAATTTCCTGGTCctctaattttaaaat
ttcttagtCTGTCGGGaactttttgcttctttttttgtCATTCCCCTTGG
GTTAGAATCTGACAGTTTATGTGTGTCTCTCTTTGGGCTGCCTGGAAACT
TGAAAAATGGTACACTTTGTTTCCTTGGTGGTTTAGTTTTCTCGTAATCT
AGAATTCTAATTTTCTTCTAATCTCTTATAGGACGCAAGGGTTAAGCTTC
AACATCGTGACGAGTCGACTTGGAGCTGCTGTGTCACCTTTTACAAACAA
CCTGGACTTGATCCATCCTATTTTACCATTCTTCGTAATCTGTGTATCAA
CAATAGTTGCGCTTTTCATGTGTCTCTTCCTTCCCGAAACGCTGGGAAAA
CCAACGAGGGAGAAATTCGAGGATATCTATGACGATTGAGAAACTTGATA
TCtgcgaaaaaaaagaagaatggaAAATTTATTTCGTTTGATATTTCTCT
GCATTGTCGATCTTGTAATAGGTTTCAGGGTTGAAAAAGTTCAAGAGCTG
TAAAAAACTgaagatcttatttttttggcattaACCCCTTATATTCGAAG
AGGTTGGCCAAATAATTAATTGGAAAGAGTGTTATAAAGATTGGTATTTT
AAGtactaaaatcaaaatatttttctagaaattaTTTAGTGTGAGGACGC
TCACTAGGTAGGCT

Coding sequence (CDS) from alignment at sc0000039:590343..596556+

>TCONS_00004054 ID=TCONS_00004054|Name=TCONS_00004054|organism=Clytia hemisphaerica|type=CDS|length=1635bp|location=Sequence derived from alignment at sc0000039:590343..596556+ (Clytia hemisphaerica)
atGAATACCTCTACTGAACATGAAGAACTAAAGACTGGGAGCGAGTCTGC
TTTAGACCAACAACAACATGTTTCACCGGAAAACACCCCAATTGAAAAAG
AGATATTACAACATGAACAAGACAATAcgcatgaaaatgaaaaagacgaA
CACGGCAcaaatttgtccgaaaatcagaTAGCGTCCGATAGTAAAGAGAT
AGAAATAATTGATATAGATGAATTTTTAATACGAACTAAAGAATGTGGTC
TTTCACAATTCGCAATAGTGTTGGGAATGATGTTAGTGACGTTCACGTTA
GCATATACACCCTTCATCTTCTATTTCATTGGTTTTGACCCACATTGGAT
CGACACGGAGAATGGAACAGCTCATTATAGGGAAGATAATTCCAGATGTT
TTCTTAATGAGTCTCAATGGCGGTACGATCATGAGAAAACCACAGTTGTC
ACAGAGtatgGTTTGATTTGCGATAAATCCTGGATGTTATCAATGTTGGG
ATCCATTGTGTTTGTTGGATGGGCTTTGGGAAGCTTCGTCTTTGGATTTT
TTTCGGATAAATATGGTAGAAAATTAGTCATGATACCCTGTTTATTTTTT
GATCTCTTCTGTTTATTTCTTCACGGATTCATTTCTTCAATATGGGTTCT
AATGGCTGTTCGGTTCATTATGGGATTCTTTCACGCTGCTCCTGCCATCA
ATTCTTATATATTGATCGTGGAACTCATTGGTCCAAATTATCGAGTGCTT
GCAGCGAACGTAGCTGGCGTTGTATGGGGTATCGCCACAGCTGTATTAGC
ACTGAAAGCATTTCTTATAGATGATTGGCGTAACCTATGTATTGCAGCTT
CTGCTCCTTACTTTGTCTTGGTGGTATTGGGAATGTTTCTCCCTGAATCA
GTACGCTGGTTGAATGCCAACGGAAGATCAGAGGACGCAGAAAAGATTTT
ACACAAAGTGGCAAAATATAACAAACGAACAATTGAGAATGTTTGTTTGA
AACAAGAAGTTGAAGATCAAAGTGGATATTCATATCTTGATCTTTTCAAT
ACAAGAAAAGTTCTGAAAATCACATTATCACAGGCCTACATTTGGGGGTG
TCTTGGAATGGTATATTATACATTGTCATGGGCGTTTGCAGATCTGGGAG
GTGACATGTATCTGAATTTCATTTTGGCATCGATTGTGGAATTACCGATG
CACGCTGCTTGCGTTATTTGTCTACAAAGtttcGGACGCAAACGTACAGT
TGTGGTATCGCTCTTCCTCACTGTAGTATTCACGTTGGTTATCATGATTC
TCATTTACTTGCAAACAAAACATGAAGaaatcaaatTGGTGTTTGGTTTG
TTGAGTAAATCATGCATTTCGTTAGCTTTCATGTCTTCGTACATGTGGTC
CGCTGAAATCTTCCCAACCGTCGTTAGGACGCAAGGGTTAAGCTTCAACA
TCGTGACGAGTCGACTTGGAGCTGCTGTGTCACCTTTTACAAACAACCTG
GACTTGATCCATCCTATTTTACCATTCTTCGTAATCTGTGTATCAACAAT
AGTTGCGCTTTTCATGTGTCTCTTCCTTCCCGAAACGCTGGGAAAACCAA
CGAGGGAGAAATTCGAGGATATCTATGACGATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002271	XLOC_002271	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004054-protein	TCONS_00004054-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:590343..596556 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189568	0.222337	0.226033	0.323002	0	0	1.3483	2.01488	0.876565	1.07371	0.818049	0.639525	1.27643	1.34847	1.09099	2.8376	1.90006	1.69695	0	0	1.30952	1.31944	0.534857	1.24395	0.831964	1.35229	0.576814	0.595578	0	0.11037

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005828	MFS_sugar_transport-like
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity

Blast

[Close]

BLAST of TCONS_00004054 vs. Swiss-Prot (Human)
Match: S22AF (Solute carrier family 22 member 15 OS=Homo sapiens GN=SLC22A15 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 4.364e-55
Identity = 136/436 (31.19%), Postives = 224/436 (51.38%), Query Frame = 3

Query:  510 WIDTENGTAHYREDNSRCFLNESQWRYDHEKTTVVTEYGLICDKSWMLSMLGSIVFVGWALGSFVFGFFSDKYGRKLVMIPXXXXXXXXXXXHGFISSIWVLMAVRFIMGFFHAAPAINSYILIVELIGPNYRVLAANVAGVVWGIATAVLALKAFLIDDWRNLCIAASAPYFVLVVLGMFLPESVRWLNANGRSEDAEKILHKVAKYNKRTIENVCLKQEVE---DQSGYSYLDLFNTRKVLKITLSQAYIWGCLGMVYYTLSWAFADLGGDMYLNFILASIVELPMHAACVICLQS--FGRKRXXXXXXXXXXXXXXXIMILIYLQTKHEEIKLV-----FGLLSKSCISLAFMSSYMWSAEIFPTVVRTQGLSFNIVTSRLGAAVSPFTNNLDLIHPILPFFVICVSTIVALFMCLFLPETLGKPTREKFEDI 1787
            W+ T NG+  ++  +           +    T++ +E+ LI ++S+ +S   S  F G  +G   FG  SD++GRK V +     D+     +GF  S       RF++G  +   ++ +++L+ E +G  Y  LA ++ G+ + +  A  AL  + I  WR L I  +    V+ +L +F+PES RWL + GR  +AE+ L+ +AK N++      L         ++G S+LDLF  R +L  TL   +IW    +VYY L+ +  DLGG +Y N  L+ ++E+P +  C+  +    FGRKRT+   L L  +  L++M L   + K   +  V       LL K  IS AF   Y++++E++PTV+R  GL    + SR+G  ++PF  +L  +   LPF V   + + +  + L LPETL  P  E F D+
Sbjct:   75 WLLTANGSEIHKHVH-----------FSSSFTSIASEWFLIANRSYKVSAASSFFFSGVFVGVISFGQLSDRFGRKKVYLTGFALDILFAIANGFSPSYEFFAVTRFLVGMMNGGMSLVAFVLLNECVGTAYWALAGSIGGLFFAVGIAQYALLGYFIRSWRTLAILVNLQGTVVFLLSLFIPESPRWLYSQGRLSEAEEALYLIAKRNRKLKCTFSLTHPANRSCRETG-SFLDLFRYRVLLGHTLILMFIWFVCSLVYYGLTLSAGDLGGSIYANLALSGLIEIPSYPLCIYLINQKWFGRKRTLSAFLCLGGLACLIVMFLP--EKKDTGVFAVVNSHSLSLLGKLTISAAFNIVYIYTSELYPTVIRNVGLGTCSMFSRVGGIIAPFIPSLKYVQWSLPFIVFGATGLTSGLLSLLLPETLNSPLLETFSDL 496

The following BLAST results are available for this feature:

BLAST of TCONS_00004054 vs. Swiss-Prot (Human)

BLAST of TCONS_00004054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S22AF	4.364e-55	31.19	Solute carrier family 22 member 15 OS=Homo sapiens...	[more]

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TCONS_00004054 (transcript) - C. hemisphaerica