TCONS_00004098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004098
Unique NameTCONS_00004098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004098 ID=TCONS_00004098|Name=TCONS_00004098|organism=Clytia hemisphaerica|type=transcript|length=1749bp
CCTCTTTTAAACCTCTTTTATTTTGGAAGGTTTTTATTGTAAAGTTCAAA
ACCTTTTAATTCACTGaaaatttatagaaaatatGTGAAGAAAAGTCAAA
GTTGTTTAAAGCTTTAGATGTTTTAAAATATGAAGGTAAAGTTGgtaaaa
aaatggataaaacTACAATAGAGCTTGACACTTCTAAGGTGCAGGAAAAT
CCGAATGCCATTGGAATGGGGGAAATGACCACACCAAAACTGCAAGATGA
AAATCAAACTCCCTCATTGGTTGACagggaaaaaaagaagatttcaaGGG
GGAAAGAAAAAATGGggtcaaaacaaagaaaaagcatTAAGCTGAAGGAG
AATGTTGATGAAGTTGTTGCACCATCGCCaaagaagaaaattgataaTGT
CGCTGATGAAAATGATcgaataaagaagaaaatactTGAATTGACGTTTA
GTCGTGACACAGGAGAGTTAGTCTCAAAAATGGATCAAGAATACGTGGAA
GAATTGAAAGCAGCTTTCGAACACGCTGACATCAATGATAGTGGTAATAT
CCAAACAAGTGAACTGGTTATTCTTCTGAAGAATCTGGGCGTGAACGTCG
CTGATACTGAAATGCAGGACATTGTCAACGAGTTTGATTTCAATGGAACT
GGTGCTATTGATTTCAATGAGTTTCTTCAATTCATGGCGAGAAGAGATGA
ATGGAGATGTGAAGAAGATATCAAAATTGCATTTAGTGTTTTTGACCCTG
ACAACGAAGGTTTCATTGACGTTCAAGAACTTCGTGAAATCATGCAGCGA
GATGAAGAGAATTTGACTGAAAAAGAGATCAAAGAGATTTTATCAGTGGT
CGACCAAGATGGAAATGGAAGAGTGGAATATAGTGAGTTTGTACAATTGA
TGTTGAACGACCATGACGAGGGAGGCTAGAAAAACACGATGTTCAATTTG
TATTCCATTAATGAGAGAGGTCAGGTGAACCCAATGGAAAAAAGTACCCG
ATGAAAAAACACCTCAAGTATGCTTCCTAAATGTAGTCGAACGCTTGTAA
CTGTGCAAATCAATGGAAAGTCAATTTACTAGATTGGTAAGACTCGTTGA
ACTGCAGGACAGACGGATACAAAGCATGGTTTGGAGGATGTCTACTACCG
CAATACATATTTTGGAGTTGGAACATATTTACATCCTCGCTTACCTCAAC
GTTTTTTGCATTGGGATTATCACCATGGAAATGAAATCAtaacaaacatg
aaaaaatactttcaaaactttcacGCATCAATATTTAGTAAAACCAAGGA
AATTTGATAAATCCGATGACAATATCATACGATTGAAGCTCTCTCATTCG
ATCTTCTACTATTCGATTGATaggctccattattcgatgatattgaaatt
caacgtcaaaaagaaacactcataaacgacgctctgcCATTcaataagct
cccttattcgatgaaaatcgaataagagagcgtcaacttaCGAAGATTCT
TTGATAAAACTCAACGAAAAAAATCTGTTGAGTCAACTTCCGTGCTACTa
actatttttctaaaaatattttctaacggCCACATGGTTATTATTTTTCA
CCAACGCGCGTGCGAATTGGGATGATGAAGAAGTCGAGAAACATCCACCT
ACGGCTGCTCTTAACCGCAAATTTATTAATTGCGACCGTTAGAAAGTTTG
TGAAATATTGCACAACTCAATGTTGGCTTTATTACAAAGATTGGCTTCG
Run BLAST on NCBI

protein sequence of TCONS_00004098-protein

>TCONS_00004098-protein ID=TCONS_00004098-protein|Name=TCONS_00004098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MDKTTIELDTSKVQENPNAIGMGEMTTPKLQDENQTPSLVDREKKKISRG
KEKMGSKQRKSIKLKENVDEVVAPSPKKKIDNVADENDRIKKKILELTFS
RDTGELVSKMDQEYVEELKAAFEHADINDSGNIQTSELVILLKNLGVNVA
DTEMQDIVNEFDFNGTGAIDFNEFLQFMARRDEWRCEEDIKIAFSVFDPD
NEGFIDVQELREIMQRDEENLTEKEIKEILSVVDQDGNGRVEYSEFVQLM
LNDHDEGG
Run BLAST on NCBI

transcript from alignment at sc0000039:107405..110744-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004098 ID=TCONS_00004098|Name=TCONS_00004098|organism=Clytia hemisphaerica|type=transcript|length=3340bp|location=Sequence derived from alignment at sc0000039:107405..110744- (Clytia hemisphaerica)
CCTCTTTTAAACCTCTTTTATTTTGGAAGGTTTTTATTGTAAAGTTCAAA
ACCTTTTAATTCACTGAAAATTTATAGAAAATATGTGAAGAAAAGTCAAA
GTTGTTTAAAGCTTTAGATGTTTTAAAATATGAAGGTAAAGTTGGTAAAA
AAATGGATAAAACTACAATAGAGCTTGACACTTCTAAGGTGCAGGAAAAT
CCGAATGCCATTGGAATGGGGGAAATGACCACACCAAAACTGCAAGATGA
AAATCAAACTCCCTCATTGGTTGACAGGGAAAAAAAGAAGATTTCAAGGG
GGAAAGAAAAAATGGGGTCAAAACAAAGAAAAAGCATTAAGCTGAAGGAG
AATGTTGATGAAGTTGTTGCACCATCGCCAAAGAAGAAAATTGATAATGT
CGCTGATGAAAATGATCGAATAAAGAAGAAAATACTTGAATTGACGTTTA
GTCGTGACACAGGAGAGGTTGGGAGTCTGGGTCTGTTTGACCCTTTTGTT
TAATCCATTTAATTGGGATTTTTTGATGTATAGTGAACAACTTTCTGCCC
ACTAATGACCATTGATTTAAAGTTTCGATGGCGAAATTGACTCCCTTTAC
CAGACCTCCAACAGTGATTTAATTCCATTGAACGTATTTATCAAAAGGAG
ACAAACATCTCTGAACACAGCAAAAGAACGTGACCTCATAAACCATTTTT
AAGGGGTTTGATCCATCCTTCTTCATCAAAATTTCATCAAGCTATATTAT
ATAAAATCACTGGCGTCAATAAAAAATAAATTTCGAAAAAACATCTAAAG
AACTTTTCGAGGGCGTGTAGCATCATCAAAAACTTTATTTACCCTTCTTC
ATTTTTCGTCAGGGTTCTTTTTTTGAAATATGTTGACAGATAACTGGTAG
TAAAATAAACATGGTAACCGTTTAAGACTTTACACCAGGTTGAGTGCTAG
ATATTTTGGTTAAATAGAGTCGACATGTTATGTGAATATTATTACAAGTC
TTTAGATTGTTTTTACCAGGGTCCTTTGAGCTGAATCGAGCATTAGAATG
GGCGAGAATTCGAACCTGAAATCCCTGGTTTGTGGCCACTAAGTTATCGT
TCCTTTTAATTACTGATAACATAACAAATTGTCCACGAACATTTCCAAAG
AGTTTATTTCTTCGATGACAACTCTTCCAAAGTGTTTCATGCAGTTTCAA
ACTCACAATTTGACTCAGCAATACCCGAAAGCTACTGATGTTGATTTTCT
TTCTCTCTTGTTTTCTTTCAGTTAGTCTCAAAAATGGATCAAGAATACGT
GGAAGAATTGAAAGCAGCTTTCGAACACGCTGACATCAATGATAGTGGTA
ATATCCAAACAAGTGAACTGGTTATTCTTCTGAAGAATCTGGGCGTGAAC
GTCGCTGATACTGAAATGCAGGACATTGTCAACGAGTTTGATTTCAATGG
AACTGGTGCTATTGATTTCAATGAGTTTCTTCAATTCATGGCGAGAAGAG
ATGAATGGAGATGTGAAGAAGATATCAAAATTGTAAGAATTCTCCCGCCT
TTAAGGCTTAATTACTGTTGTGCTTTCAACAGCAATTCTACGATGAGGAG
TTTATTTTTAGAGGAGTAGATGTCTGCTTATTCTTTTTAAGTCATGAATT
TCTTTCTCATGTTATAAAAAGGGTTCCTTTCAAGGCAGCCCTTAGCTCAA
CCTTAATAACCTCAACCTGCCATCAGATCAAACAACAATATCAGGAAAAT
TAGAAAAATTTCCATCGTGAATTATTGAAAGATCTTAGCTTTTCACCACG
TTAATTCGCTCAAAGAACCCACGATGAAATTTTCTAATTTTCCAATAAAC
TTTCTTTTTTCAAATAACTAGTAATAAGAGTCACAGTAAGCTTGAAATCT
CGTGGACAAATTCTATTTCAACGTTGGTTTCCATAACAAACGGACTCAAC
AAAATAATATCATTTCATTATAGGCATTTAGTGTTTTTGACCCTGACAAC
GAAGGTTTCATTGACGTTCAAGAACTTCGTGAAATCATGCAGCGAGATGA
AGAGAATTTGACTGAAAAAGAGATCAAAGAGATTTTATCAGTGGTCGACC
AAGATGGAAATGGAAGAGTGGAATATAGTGGTAAGTCTTTCTTCATAATG
TTGGAAGTCTTATCTTCAGTACCTTCAAGACCTATGTTCTATCAAACTGT
TGAGTTGTGTTAATGGGAAAGCCTGTAGTGTAGCCTATGTAGACTCAGTT
ACCTTTAGGTATCAACCTGAAGGGAGGGGTGGGCATGGCATTATTATAGT
AGTGGTATGTCCATGGTATGTCGTAATATTGGTTTAATACAAATCCTGCA
CCCCGGTCTCATTAAACAACGGGGTCTCTAATAAAGGGGGTTGAAACACT
CCATTAAATTGACTAAATTGAGATAGTAGCTCGATAATGAATTAATCCAA
AAACCATTTCTTTTATTCATTGGTAGAGTTTGTACAATTGATGTTGAACG
ACCATGACGAGGGAGGCTAGAAAAACACGATGTTCAATTTGTATTCCATT
AATGAGAGAGGTCAGGTGAACCCAATGGAAAAAAGTACCCGATGAAAAAA
CACCTCAAGTATGCTTCCTAAATGTAGTCGAACGCTTGTAACTGTGCAAA
TCAATGGAAAGTCAATTTACTAGATTGGTAAGACTCGTTGAACTGCAGGA
CAGACGGATACAAAGCATGGTTTGGAGGATGTCTACTACCGCAATACATA
TTTTGGAGTTGGAACATATTTACATCCTCGCTTACCTCAACGTTTTTTGC
ATTGGGATTATCACCATGGAAATGAAATCATAACAAACATGAAAAAATAC
TTTCAAAACTTTCACGCATCAATATTTAGTAAAACCAAGGAAATTTGATA
AATCCGATGACAATATCATACGATTGAAGCTCTCTCATTCGATCTTCTAC
TATTCGATTGATAGGCTCCATTATTCGATGATATTGAAATTCAACGTCAA
AAAGAAACACTCATAAACGACGCTCTGCCATTCAATAAGCTCCCTTATTC
GATGAAAATCGAATAAGAGAGCGTCAACTTACGAAGATTCTTTGATAAAA
CTCAACGAAAAAAATCTGTTGAGTCAACTTCCGTGCTACTAACTATTTTT
CTAAAAATATTTTCTAACGGCCACATGGTTATTATTTTTCACCAACGCGC
GTGCGAATTGGGATGATGAAGAAGTCGAGAAACATCCACCTACGGCTGCT
CTTAACCGCAAATTTATTAATTGCGACCGTTAGAAAGTTTGTGAAATATT
GCACAACTCAATGTTGGCTTTATTACAAAGATTGGCTTCG

Coding sequence (CDS) from alignment at sc0000039:107405..110744-

>TCONS_00004098 ID=TCONS_00004098|Name=TCONS_00004098|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at sc0000039:107405..110744- (Clytia hemisphaerica)
ATGGATAAAACTACAATAGAGCTTGACACTTCTAAGGTGCAGGAAAATCC
GAATGCCATTGGAATGGGGGAAATGACCACACCAAAACTGCAAGATGAAA
ATCAAACTCCCTCATTGGTTGACAGGGAAAAAAAGAAGATTTCAAGGGGG
AAAGAAAAAATGGGGTCAAAACAAAGAAAAAGCATTAAGCTGAAGGAGAA
TGTTGATGAAGTTGTTGCACCATCGCCAAAGAAGAAAATTGATAATGTCG
CTGATGAAAATGATCGAATAAAGAAGAAAATACTTGAATTGACGTTTAGT
CGTGACACAGGAGAGTTAGTCTCAAAAATGGATCAAGAATACGTGGAAGA
ATTGAAAGCAGCTTTCGAACACGCTGACATCAATGATAGTGGTAATATCC
AAACAAGTGAACTGGTTATTCTTCTGAAGAATCTGGGCGTGAACGTCGCT
GATACTGAAATGCAGGACATTGTCAACGAGTTTGATTTCAATGGAACTGG
TGCTATTGATTTCAATGAGTTTCTTCAATTCATGGCGAGAAGAGATGAAT
GGAGATGTGAAGAAGATATCAAAATTGCATTTAGTGTTTTTGACCCTGAC
AACGAAGGTTTCATTGACGTTCAAGAACTTCGTGAAATCATGCAGCGAGA
TGAAGAGAATTTGACTGAAAAAGAGATCAAAGAGATTTTATCAGTGGTCG
ACCAAGATGGAAATGGAAGAGTGGAATATAGTGAGTTTGTACAATTGATG
TTGAACGACCATGACGAGGGAGGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002284XLOC_002284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004098-exon-sc0000039-1575043694:110278..110744TCONS_00004098-exon-sc0000039-1575043694:110278..110744Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1575043694:109213..109473TCONS_00004098-exon-sc0000039-1575043694:109213..109473Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1575043694:108615..108771TCONS_00004098-exon-sc0000039-1575043694:108615..108771Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1575043694:107405..108268TCONS_00004098-exon-sc0000039-1575043694:107405..108268Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1510915933:110278..110744TCONS_00004098-exon-sc0000039-1510915933:110278..110744Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1510915933:109213..109473TCONS_00004098-exon-sc0000039-1510915933:109213..109473Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1510915933:108615..108771TCONS_00004098-exon-sc0000039-1510915933:108615..108771Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1510915933:107405..108268TCONS_00004098-exon-sc0000039-1510915933:107405..108268Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1491911889:110278..110744TCONS_00004098-exon-sc0000039-1491911889:110278..110744Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1491911889:109213..109473TCONS_00004098-exon-sc0000039-1491911889:109213..109473Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1491911889:108615..108771TCONS_00004098-exon-sc0000039-1491911889:108615..108771Clytia hemisphaericaexon
TCONS_00004098-exon-sc0000039-1491911889:107405..108268TCONS_00004098-exon-sc0000039-1491911889:107405..108268Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004098-proteinTCONS_00004098-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:107405..110744 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0230375	0	0.0521685	0.076558	0	0	0.0592367	0.0277283	0	0.0240464	0.0233401	0.0767142	2.03776	2.32309	0.62791	0.772112	1.15871	1.73714	2.71832	2.94703	2.09375	2.05338	0.686773	1.60897	2.22609	3.73064	0.063178	0	0	0.0260516
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00004098 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.098e-30
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 3 
Query:  468 LVSKMDQEYVEELKAAFEHADINDSGNIQTSELVILLKNLGVNVADTEMQDIVNEFDFNGTGAIDFNEFLQFMARR-DEWRCEEDIKIAFSVFDPDNEGFIDVQELREIMQRDEENLTEKEIKEILSVVDQDGNGRVEYSEFVQLM 902
            +  ++ +E + E K AF   D +  G I T EL  ++++LG N  + E+QD++NE D +G G IDF EFL  MAR+  +   EE+I+ AF VFD D  G+I   ELR +M    E LT++E+ E++   D DG+G+V Y EFVQ+M
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00004098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM32.098e-3042.47Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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