TCONS_00004120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004120
Unique NameTCONS_00004120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004120 ID=TCONS_00004120|Name=TCONS_00004120|organism=Clytia hemisphaerica|type=transcript|length=2586bp
atcgattgtggtttcaaaatttcccgggggatttcccttttttctcaaat
attacgaccatgattgcagataaaatccgttcatggggggtggaggatga
attgtccaggggtattgaaaaaataccaaaaaattgcaatgtccagaNAC
ATGAATTCCAAGCAGAAACCAGGCAACTTTTGGACATCGTTGCAAGATCC
CTCTATTCTGAAAAAGAGGTCTTCATTCGAGAGATTGTGTCGAATTCATC
GGATGCTCTCGAGAAGCTGCGGCAAGTTCAAGTTACTGGTCAACAAATTT
CTGATTCTGATTCTCCCCTTGAAATCCATCTGACCACTGATGAAGAAAAG
GGCCTGTTCATTATCCAAGATTTTGGTATCGGCATGAGCAAAGATGAGCT
TATCAATAACCTTGGTACGATCGCTCGATCAGGCTCAAAAGCTTTTATTG
AGAAAGCTAAGCACGAGAGCATTGACGCTCAAAACATCATTGGACAATTC
GGTGTGGGATTTTATTCCACCTTTATGGTTGGTGATAAGATTGATGTTTT
TACCAAATCTTATGAGCCAAGTGCTTCTGGATATCATTGGTCATCCGATG
GATCTGGCTCATACGAGATCGCCGAAGCTGAAGGCGTAACACGTGGTACA
AAAGTCATCATCCATTTGAAATCTGATGATCGAAGGTTCTCCCTCAAAAC
TACTGTCGAAGATATCATTCGGCGCTACAGTAACTTTGTCGGATTTCCCA
TTTACTTAAATGGCTCAAGACTCAACAACATTGATGCTTTATGGACGAGC
TCAGAGAGGGATGTCAGCGAAACAGACCATTCCCAATTCTATCAGTTTAT
TTCCAATACGTCAGACGAACCTCGCTATTCGCTCATGTACAAAGCGGACG
CCCCATTGAACATTCGTAGTGTTTTATACGTACCTTCCAATATCCCAGAA
ATGTTCGGTTTCGGGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGAA
GATTTTGATTCAATCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGTT
TCATTCGTGGTGTTGTTGATAGTGAAGACATCCCATTGAACTTGAGTAGA
GAACTCCTTCAAGATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTGT
TACTAAACTACTAAGGTACTTCTTAGAACAATCGcgaaaagatgaagaaa
aattCACGAAATTTATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGTG
GTCACTGACCAGTCACCATCTCGACGTGAAGATATCGCCAAATTGCTGAG
ATTTGAAAGTTCGAAAGAAAGACCAGGACATTTGAAATCTTTGATGGATT
ATATTTCTGGAATGAAAGAagatcaaaaagaaattttcttcctttcttcT
CCAAGCCGTGAGCTAGCAGAATCATCGCCATATTACGAAGCATTGAAAGT
AAAAGATGTGGAAGTACTTTTCACGTACgaagaaaatgatgaagtcGTTT
TTGCTGCTCTCAAAGAattccaaaagaaaaatataatttctgcGGAAAAC
TATTTGATGAGTTCAGATCCTctcactgatgacgtcatcaccgaTCAACC
CGACATTGaaaaattatcGGAAACTGAGACAAACGAACTAATGGATTGGA
TTCAAAACACACTTGGAAAAACGAAATGTCAAAACATTAAAGAATCGAAA
CGCCTCGCATCACACCCTGCAATGATCACAGTGCCCGATATGGGGGCAGC
TAGACGATGGTTGAAATTCGTCAAATCTGGCCCCAATACTGATCTTCTAA
AGATGAAATTTGAAGTACTTCAACCAACTTTCGAGATCAATCCCAACCAC
GAGATCGTCCGCTCACTGAACACACTAAAAGGAAGCAATCCCATGCTTGC
TGAACTCTTGGTCAACCAGCTTTTTGACAACGCACTTATTACTGCTGGTT
TGTTGGACGATCCTCGTGAAATGGTTGGCCGATTGAACACCCTTTTGTCT
AAAGTGATGACCAGATTGAATATCGAagaacagaaaaaagataaacaaca
GACCATTATTACTCCTTGAATATAGAAATATATTTTGCTGAAAACTGAAC
TCTTTGcggtttttctcatttttttcaatcattgCTTTGTTATTCAGAAA
TATAGTTCAATAAAGGTATCGACAAattattttaagttttgataataatc
ttttattttttcttgattCAAAATCATTATTAGGTTACAGGTTTGGTAGA
GTCAACCTCTAAGTTGTGCACAGGCAGGACATTTGCAAAGACAGTCGAAG
CTTTCAGCTCTGGCACTGAAAACCAATCTGTTCTTCTTATTTCTCTTCTG
TACACATTTCAAACAGCATGAGAATCGATCAGAATTTCGTATTCTGAGTG
GCAGTCGAGGTCCTGGACAGTTGGCAAATCGTCTGCAAACGAACATGGCT
TTTCGCGGGATatgtttctataaaaaaaaggaaaaagaagttAGAGTTTT
ATCGTCTGAGTATGGAAGCACAGGGTTGTACCTCCTTGGAACCTTATTTT
TGTTGAGGCACTTTGAGACTCAAATTCTTCGCGTaa
Run BLAST on NCBI

protein sequence of TCONS_00004120-protein

>TCONS_00004120-protein ID=TCONS_00004120-protein|Name=TCONS_00004120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=688bp
RLWFQNFPGDFPFFSNITTMIADKIRSWGVEDELSRGIEKIPKNCNVQXH
EFQAETRQLLDIVARSLYSEKEVFIREIVSNSSDALEKLRQVQVTGQQIS
DSDSPLEIHLTTDEEKGLFIIQDFGIGMSKDELINNLGTIARSGSKAFIE
KAKHESIDAQNIIGQFGVGFYSTFMVGDKIDVFTKSYEPSASGYHWSSDG
SGSYEIAEAEGVTRGTKVIIHLKSDDRRFSLKTTVEDIIRRYSNFVGFPI
YLNGSRLNNIDALWTSSERDVSETDHSQFYQFISNTSDEPRYSLMYKADA
PLNIRSVLYVPSNIPEMFGFGRMELGVSLYSRKILIQSKAQKILPEWLRF
IRGVVDSEDIPLNLSRELLQDSALIQKLSDVLVTKLLRYFLEQSRKDEEK
FTKFMKECGNYFREGVVTDQSPSRREDIAKLLRFESSKERPGHLKSLMDY
ISGMKEDQKEIFFLSSPSRELAESSPYYEALKVKDVEVLFTYEENDEVVF
AALKEFQKKNIISAENYLMSSDPLTDDVITDQPDIEKLSETETNELMDWI
QNTLGKTKCQNIKESKRLASHPAMITVPDMGAARRWLKFVKSGPNTDLLK
MKFEVLQPTFEINPNHEIVRSLNTLKGSNPMLAELLVNQLFDNALITAGL
LDDPREMVGRLNTLLSKVMTRLNIEEQKKDKQQTIITP
Run BLAST on NCBI

transcript from alignment at sc0000039:389860..398234-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004120 ID=TCONS_00004120|Name=TCONS_00004120|organism=Clytia hemisphaerica|type=transcript|length=8375bp|location=Sequence derived from alignment at sc0000039:389860..398234- (Clytia hemisphaerica)
ATCGATTGTGGTTTCAAAATTTCCCGGGGGATTTCCCTTTTTTCTCAAAT
ATTACGACCATGATTGCAGATAAAATCCGTTCATGGGGGGTGGAGGATGA
ATTGTCCAGGGGTATTGAAAAAATACCAAAAAATTGCAATGTCCAGANAC
ATGAATTCCAAGCAGAAACCAGGCAACTTTTGGACATCGTTGCAAGATCC
CTCTATTCTGAAAAAGAGGTTAGCTACGATATTAACTTTTATCAGATATT
TATTAGTCGGCCTAAAGTTACGAAACAACAAGAAAAGCTATTTAAGGTTT
TCCTTCAGACCGCAATTATTGCTCAAAACTTTAAAGTGTCATAAAAGCTT
GTAGCTTTTGATTTAGAAGATGGCTTTGGTACCATTGGTAGGCTATTTTC
ATACTCTGCGTCCCTCGTGGTCTAAGGGTTGAATTCTTTTGAAGGGAAAA
AATTCACTTATGATAATTGTCATTTAGGTCTTCATTCGAGAGATTGTGTC
GAATTCATCGGATGCTCTCGAGAAGCTGCGGCAAGTTCAAGTTACTGGTC
AACAAATTTCTGATTCTGATTCTCCCCTTGAAATCCATCTGACCACTGAT
GAAGAAAAGGGCCTGTTCATTATCCAAGATTTTGGTATCGGCATGAGCAA
AGATGAGCTTATCAATAACCTTGGTACGATCGCTCGATCAGGCTCAAAAG
CTTTTATTGAGAAAGCTAAGCACGAGAGCATTGACGCTCAAAACATCATT
GGACAATTCGGTGTGGGATTTTATTCCACCTTTATGGTTGGTGATAAGAT
TGATGTTTTTACCAAATCTTATGAGCCAAGTGCTTCTGGATATCATTGGT
CATCCGATGGGTAAGTAGAAAAAAAAGGCTTCACAAAATAATAACCAAAT
CTGTTATGTCGAATTCATTTTTTTTTCCTCGATTTAATCCTATTAATTTA
GTTGTAAGGTTGCCAGTCACTTTTAACTTTGTGATTTTCTCAAGCTTGTA
TCGGAGCAATAATCTCTTTCCCACCTTTGCGAGTTTGTCACGTATTTTGT
AGTTTGAAAGATAAATGAAATGTTTCAAAAATTATATTATCATGTTTGTG
TAATGCAATTGACGTAACATGTCTTAAAATACTATTCAATCGAAGTTTTT
TTGTTTACCGTTGCATAACAGCCTGTTCAAACGTTCAGTGAAGGGGTCAG
TCGTTCATATACTGAAACCGCTAAGGAAAAAAATTTACCTTAAGCGAGAA
TTTTATCACATCAATATGTCGGACGGCTATTTCATTTTGAAAAATTTGAA
GATTGGGTTCTCATAAAACTACTTTAAACTTTAAAGTGGCTCTTTAGGGT
TAGACCATGTTCACACACGACGGTTCCGTTTCGCTCCGAAACGAAATGAA
GCCATTCTATTGGTTAGAAGTGACGTAAAACTTGAATGGGATAATTGAAA
CAAATCTGAGCGATCTCCATCCATTTACGAAAGCTTTCTCCTATTAACAG
ATCTGGCTCATACGAGATCGCCGAAGCTGAAGGCGTAACACGTGGTACAA
AAGTCATCATCCATTTGAAATCTGATGATCGAAGGTTCTCCCTCAAAACT
ACTGTCGAAGGTGAGAATTTACAAAACTGTTCACTCATCATGGTGCTTGT
TCTTCTCTAGATGAAGAATCTAAAATGGAAGGTGCTGTGAAAATACGATG
CCATTACAAAAACAGTAATATCCTTTGTATATGTTCAATTTTATGGCTTT
TTTTAAAACAAGTACCTGAAAGAATGGTCCAGGCAACTATCTGTTTTTGA
ACGTTTTGAAGCTTGGAATAGACTTCGGAAATAACTTACCTGTATATTTT
AGATATCATTCGGCGCTACAGTAACTTTGTCGGATTTCCCATTTACTTAA
ATGGCTCAAGACTCAACAACATTGATGTAAGTGTATCTGAATGGGTTGGC
AAACGATATCATCCACCAGGATGCATCCTCTCTTATTTTCCCCCTATTTT
CTACTTTCCTATCTTCTATCCTGATTTTCTGACTTTCTCTAGTGTTTCTA
ACTGTTTTCTAAGTATTTTTCTGAAATTTGACCGTACCGGTGTGGTCTCC
GACCCCGGCTCGAACCACCAAATGCGAGTAACCTTGGTTTACAAACCCAA
CGCTCAACCGCTTGAGCCAACGAGACACGGCAGAAAGTTGTCACTCACAA
ATACTTATAGCGTGTAATTTACAGACCTTTATTAAGAAAGCTCCCAACCC
TACCGGTGCCCCTACAAGGATCCCTACGGGATCCTAAGTTAGGTCACAGG
GTACGGATGCCCCTAAGAAGGCCTTCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCTCCA
ACCCTAACCCTAACTGATAATAACCGAACCCCCGTCTAGGTCCGCAGATT
GAAAAATTTCACTTGCATCCTGGTGGATGATATCGTCTGCCAACCATCTG
AATGGGCGTGTATTCCTTAAATTTTCTAATAGTTTCAACGTTATTTGATG
CCTTAGATACCTGTATCTAAAGGATTGTTTATAAAGAATTAAACGAGGTT
GGCATGAATTACCCCCTTACTCCACACATGTTTAAATAAAGAACCTTTTG
ATAAATGGCTCATAAGATTATGTACATCCCTCATCCCTTGACCCTGACCT
TGGTAGATACTTCATACGGACACTCGTTCGTTTACGTTCTTGCAATATTT
GCTGAAATGGTTTTGAGAACTTCACAGACAATTATCAATACGAATGTAAA
AACTTGACTTGAATAATTATAGGCTTTATGGACGAGCTCAGAGAGGGATG
TCAGCGAAACAGACCATTCCCAATTCTATCAGTTTATTTCCAATACGTCA
GACGAACCTCGCTATTCGCTCATGTACAAAGCGGACGCCCCATTGAACAT
TCGTAGTGTTTTATACGTACCTTCCAATATCCCAGAAATGTTCGGTTTCG
GGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGAAGATTTTGATTCAA
TCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGTTTCATTCGTGGTGT
TGTTGATAGTGAAGACATCCCATTGAACTTGAGTAGAGAACTCCTTCAAG
ATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTGTTACTAAACTACTA
AGGTACTTCTTAGAACAATCGCGAAAAGATGAAGAAAAATTCACGAAATT
TATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGTGGTCACTGACCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAAGAACCTTCTGATAAATGGCTCATAAGATTATGTACATCCCTCATCC
CTTGACCCTGACCTTGGTAGATACTTCATACGGACACTCGTTCGTTTACG
TTCTTGCAATATTTGCTGAAATGGTTTTGAGAACTTCACAGACAATTATC
AATACGAATGTAAAAACTTGACTTGAATAATTATAGGCTTTATGGACGAG
CTCAGAGAGGGATGTCAGCGAAACAGACCATTCCCAATTCTATCAGTTTA
TTTCCAATACGTCAGACGAACCTCGCTATTCGCTCATGTACAAAGCGGAC
GCCCCATTGAACATTCGTAGTGTTTTATACGTACCTTCCAATATCCCAGA
AATGTTCGGTTTCGGGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGA
AGATTTTGATTCAATCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGT
TTCATTCGTGGTGTTGTTGATAGTGAAGACATCCCATTGAACTTGAGTAG
AGAACTCCTTCAAGATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTG
TTACTAAACTACTAAGGTACTTCTTAGAACAATCGCGAAAAGATGAAGAA
AAATTCACGAAATTTATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGT
GGTCACTGACCAGTCACCATCTCGACGTGAAGATATCGCCAAATTGCTGA
GATTTGAAAGTTCGAAAGAAAGACCAGGACATTTGAAATCTTTGATGGAT
TATATTTCTGGAATGAAAGAAGATCAAAAAGAAATTTTCTTCCTTTCTTC
TCCAAGGTACGCTACTTTCTTCCCGTCATGCCTTTCTTCTAAGGAAGTTT
CAAAACAAAACTTACGTGGTCTTTAAAAAAATGTTGATCTCGATTATGTT
TTATGATTGTTCATTTCAATAAGAGGCCACTCACATATCGATTTTCCCAC
GACTAACGTCAAAATGACACGAGACGATACTGGCTTTGTGTAAAAACCAT
GAAAAATAGATGACCAAAACTATGCGTAGCGAGAGTAATTAACAAAATGA
AAAAAAAATTTGATATTTGTTAGAAAAATTAGAATTAAATCAGTCCCGAA
GATCGATGTTTTGATTAATTTTCTTAGCGTCAATGCCTCTGACCCCCACT
CCCTCGCGTCATTTTGGCGTTAGTTTATTAGGAAATATCGATATGTGAGT
GGCCACTAATCGATTCTATAAATGTATCACGCGCAGTTTCGAACGAGCCA
ACCCGACAACAAAATTTTCACATAGTAGTCAACTAGTACCACTTATTTTC
CAGCCGTGAGCTAGCAGAATCATCGCCATATTACGAAGCATTGAAAGTAA
AAGATGTGGAAGTACTTTTCACGTACGAAGAAAATGATGAAGTCGTTTTT
GCTGCTCTCAAAGAATTCCAAAAGAAAAATATAATTTCTGCGGAAAACTA
TTTGATGAGTTCAGATCCTCTCACTGATGACGTCATCACCGATCAACCCG
ACATTGGTAAGAGCACTCTTCGTTTTGTTTTGTACAAATATTGATCATCC
CTGTACTAATAAAGCCTTCAAGCGTCTGCTTTAAGAACAACAACGACTTT
GAAAACACAAACTTATAAGAATTTACAATATACCCAATATTCATTCATTT
CAGACCACTCTAATTCTAGGAAATTTACAAGGTACCACTTTGGATTGATT
TAGTTCCCTTCTTATCACTTTTCCTTTCTTTTATTGATTTCAGAAAAATT
ATCGGAAACTGAGACAAACGAACTAATGGATTGGATTCAAAACACACTTG
GAAAAACGAAATGTCAAAACATTAAAGAATCGAAACGCCTCGCATCACAC
CCTGCAATGATCACAGTGCCCGATATGGGGGCAGCTAGACGATGGTTGAA
ATTCGTCAAATCTGGCCCCAATACTGATCTTCTAAAGATGAAATTTGAAG
TACTTCAACCAACTTTCGAGATCAATCCCAACCACGAGATCGTCCGCTCA
CTGAACACACTAAAAGGAAGCAATCCCATGCTTGCTGAACTCTTGGTCAA
CCAGGTAAAGAAACGAATTTTAAAAGTCTGTTCCAAAATTTTTGACATTC
GGAAATACATACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCG
GGAGGGGGGTTGGAAAAAATCTCAAAACTTAATAAGCGGGGGGGGGTTGG
AATAAAAATGTCCTGGGTGGAAAATGTTTGAAAATGAGACAAATACAGCT
GAATTAGGACAAAAGAGGGAACTTTCAAAAACATTTTCCCAAAAAATAAT
AAGCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTATCATCATATATTGTGAATTCAGATTTTTCATACCATTTTCAG
ATCTGATCTGATTAACTGATTAAATATTTGAAATTTGAGATTTTGGTTGA
AAAATCTTCAAGCAATCTATCAAGACTGTCATTTTTTCGGAGAAAAAACA
CGATTTTAAATCTAGGACGTAATCTCTAACATATTCGTGAATAACTAGAA
CGTAGAAGGATAAAAAACTATAAACACGCTCTTTTTATAAGAATACCTTA
TCGGCCAAAACTTAGTCGGCCTTGATTTTAGCTAGTCGGCCCTGATTTTA
ATCACCAAGCCAAAATTTAGTCACTTAGGGCCGACTAAGTTTTGGCCGAT
AAGGTAGTGCCTATAAGAATATCAGGGGAGATTTTGTGAATTGACAAGAA
TATAAGGGTGGGAAAACTCAAATGGAAGCATGATTTCTATCAGGAGATGA
GTTGTTGTTTTTTATACGTAAAACGTAAATAAGAAATTTTGATATCGTCT
TAGAAAATGAAAAATATTTTTTTATAAAAAATAAGAATAATGTAAAGAAA
ATCTCATCCTCGGATTCGGAAAACTCCTAAGAATACTTCATCCTCAGCCA
AAAAGAAACACTTTTCTTATAAAAAACCGTGCATCATTTCGATTTAATGG
TACGACCTTTTGCGTAGGCTCACAAGCTGAACTTGTAATCACCATATTAA
GTATAATTGAATGCAGGTTTTCATATCAAAAAAGGTGTGGTTTTAATTCA
GAAAAAAGTTTTATGTCAACGGAAGGTACCTGCAGAAAGCAGTACGGGGT
GTACGGCTGTTCAAGTTACCTTTCTTAGCCTTCTTGAGTCACTGCTTGGC
AAGAGTTTCTTTTTGGAAATTACATATTTAGATGAGTTCAGGACGTTAAA
TTTCTTACGGAAACACCCCGGTTTTTGCCAGTAGTGGCAAATTTAAAGTA
AGGAAAAAATAATTGCTTCATTTTTTCATCTAGTTGCAAAACCCGGGAAT
TTGCGTAGAAAGCGTTACATCAATCTAGTATCGCTTGCTTCACAAACTGC
GACAAAAATCTTCAAAATAAAAAACTTGGACTGATTCTTTGCTTTGTGTT
GCCATTATAATCAATTTTAACAATTTTAAACCACCTCTATTTTCTTTTAT
CGTTTTAGCTTTTTGACAACGCACTTATTACTGCTGGTTTGTTGGACGAT
CCTCGTGAAATGGTTGGCCGATTGAACACCCTTTTGTCTAAAGTGATGAC
CAGATTGAATATCGAAGAACAGAAAAAAGATAAACAACAGACCATTATTA
CTCCTTGAATATAGAAATATATTTTGCTGAAAACTGAACTCTTTGCGGTT
TTTCTCATTTTTTTCAATCATTGCTTTGTTATTCAGAAATATAGTTCAAT
AAAGGTATCGACAAATTATTTTAAGTTTTGATAATAATCTTTTATTTTTT
CTTGATTCAAAATCATTATTAGGTTACAGGTTTGGTAGAGTCAACCTCTA
AGTTGTGCACAGGCAGGACATTTGCAAAGACAGTCGAAGCTTTCAGCTCT
GGCACTGAAAACCAATCTGTTCTTCTTATTTCTCTTCTGTACACATTTCA
AACAGCATGAGAATCGATCAGAATTTCGTATTCTGAGTGGCAGTCGAGGT
CCTGGACAGTTGGCAAATCGTCTGCAAACGAACATGGCTTTTCGCGGGAT
ATGTTTCTATAAAAAAAAGGAAAAAGAAGTTAGAGTTTTATCGTCTGAGT
ATGGAAGCACAGGGTTGTACCTCCTTGGAACCTTATTTTTGTTGAGGCAC
TTTGAGACTCAAATTCTTCGCGTAA

Coding sequence (CDS) from alignment at sc0000039:389860..398234-

>TCONS_00004120 ID=TCONS_00004120|Name=TCONS_00004120|organism=Clytia hemisphaerica|type=CDS|length=2067bp|location=Sequence derived from alignment at sc0000039:389860..398234- (Clytia hemisphaerica)
CGATTGTGGTTTCAAAATTTCCCGGGGGATTTCCCTTTTTTCTCAAATAT
TACGACCATGATTGCAGATAAAATCCGTTCATGGGGGGTGGAGGATGAAT
TGTCCAGGGGTATTGAAAAAATACCAAAAAATTGCAATGTCCAGANACAT
GAATTCCAAGCAGAAACCAGGCAACTTTTGGACATCGTTGCAAGATCCCT
CTATTCTGAAAAAGAGGTCTTCATTCGAGAGATTGTGTCGAATTCATCGG
ATGCTCTCGAGAAGCTGCGGCAAGTTCAAGTTACTGGTCAACAAATTTCT
GATTCTGATTCTCCCCTTGAAATCCATCTGACCACTGATGAAGAAAAGGG
CCTGTTCATTATCCAAGATTTTGGTATCGGCATGAGCAAAGATGAGCTTA
TCAATAACCTTGGTACGATCGCTCGATCAGGCTCAAAAGCTTTTATTGAG
AAAGCTAAGCACGAGAGCATTGACGCTCAAAACATCATTGGACAATTCGG
TGTGGGATTTTATTCCACCTTTATGGTTGGTGATAAGATTGATGTTTTTA
CCAAATCTTATGAGCCAAGTGCTTCTGGATATCATTGGTCATCCGATGGA
TCTGGCTCATACGAGATCGCCGAAGCTGAAGGCGTAACACGTGGTACAAA
AGTCATCATCCATTTGAAATCTGATGATCGAAGGTTCTCCCTCAAAACTA
CTGTCGAAGATATCATTCGGCGCTACAGTAACTTTGTCGGATTTCCCATT
TACTTAAATGGCTCAAGACTCAACAACATTGATGCTTTATGGACGAGCTC
AGAGAGGGATGTCAGCGAAACAGACCATTCCCAATTCTATCAGTTTATTT
CCAATACGTCAGACGAACCTCGCTATTCGCTCATGTACAAAGCGGACGCC
CCATTGAACATTCGTAGTGTTTTATACGTACCTTCCAATATCCCAGAAAT
GTTCGGTTTCGGGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGAAGA
TTTTGATTCAATCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGTTTC
ATTCGTGGTGTTGTTGATAGTGAAGACATCCCATTGAACTTGAGTAGAGA
ACTCCTTCAAGATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTGTTA
CTAAACTACTAAGGTACTTCTTAGAACAATCGCGAAAAGATGAAGAAAAA
TTCACGAAATTTATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGTGGT
CACTGACCAGTCACCATCTCGACGTGAAGATATCGCCAAATTGCTGAGAT
TTGAAAGTTCGAAAGAAAGACCAGGACATTTGAAATCTTTGATGGATTAT
ATTTCTGGAATGAAAGAAGATCAAAAAGAAATTTTCTTCCTTTCTTCTCC
AAGCCGTGAGCTAGCAGAATCATCGCCATATTACGAAGCATTGAAAGTAA
AAGATGTGGAAGTACTTTTCACGTACGAAGAAAATGATGAAGTCGTTTTT
GCTGCTCTCAAAGAATTCCAAAAGAAAAATATAATTTCTGCGGAAAACTA
TTTGATGAGTTCAGATCCTCTCACTGATGACGTCATCACCGATCAACCCG
ACATTGAAAAATTATCGGAAACTGAGACAAACGAACTAATGGATTGGATT
CAAAACACACTTGGAAAAACGAAATGTCAAAACATTAAAGAATCGAAACG
CCTCGCATCACACCCTGCAATGATCACAGTGCCCGATATGGGGGCAGCTA
GACGATGGTTGAAATTCGTCAAATCTGGCCCCAATACTGATCTTCTAAAG
ATGAAATTTGAAGTACTTCAACCAACTTTCGAGATCAATCCCAACCACGA
GATCGTCCGCTCACTGAACACACTAAAAGGAAGCAATCCCATGCTTGCTG
AACTCTTGGTCAACCAGCTTTTTGACAACGCACTTATTACTGCTGGTTTG
TTGGACGATCCTCGTGAAATGGTTGGCCGATTGAACACCCTTTTGTCTAA
AGTGATGACCAGATTGAATATCGAAGAACAGAAAAAAGATAAACAACAGA
CCATTATTACTCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002294XLOC_002294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004120-exon-sc0000039-1575043694:398017..398234TCONS_00004120-exon-sc0000039-1575043694:398017..398234Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1575043694:397375..397757TCONS_00004120-exon-sc0000039-1575043694:397375..397757Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1575043694:396625..396734TCONS_00004120-exon-sc0000039-1575043694:396625..396734Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1575043694:396309..396382TCONS_00004120-exon-sc0000039-1575043694:396309..396382Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1575043694:393479..394098TCONS_00004120-exon-sc0000039-1575043694:393479..394098Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1575043694:392779..392981TCONS_00004120-exon-sc0000039-1575043694:392779..392981Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1575043694:392231..392541TCONS_00004120-exon-sc0000039-1575043694:392231..392541Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1575043694:389860..390526TCONS_00004120-exon-sc0000039-1575043694:389860..390526Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:398017..398234TCONS_00004120-exon-sc0000039-1510915933:398017..398234Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:397375..397757TCONS_00004120-exon-sc0000039-1510915933:397375..397757Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:396625..396734TCONS_00004120-exon-sc0000039-1510915933:396625..396734Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:396309..396382TCONS_00004120-exon-sc0000039-1510915933:396309..396382Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:393479..394098TCONS_00004120-exon-sc0000039-1510915933:393479..394098Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:392779..392981TCONS_00004120-exon-sc0000039-1510915933:392779..392981Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:392231..392541TCONS_00004120-exon-sc0000039-1510915933:392231..392541Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1510915933:389860..390526TCONS_00004120-exon-sc0000039-1510915933:389860..390526Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:398017..398234TCONS_00004120-exon-sc0000039-1491911889:398017..398234Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:397375..397757TCONS_00004120-exon-sc0000039-1491911889:397375..397757Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:396625..396734TCONS_00004120-exon-sc0000039-1491911889:396625..396734Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:396309..396382TCONS_00004120-exon-sc0000039-1491911889:396309..396382Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:393479..394098TCONS_00004120-exon-sc0000039-1491911889:393479..394098Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:392779..392981TCONS_00004120-exon-sc0000039-1491911889:392779..392981Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:392231..392541TCONS_00004120-exon-sc0000039-1491911889:392231..392541Clytia hemisphaericaexon
TCONS_00004120-exon-sc0000039-1491911889:389860..390526TCONS_00004120-exon-sc0000039-1491911889:389860..390526Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004120-proteinTCONS_00004120-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:389860..398234 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
108.115	107.994	61.2603	55.2292	79.1476	62.497	57.3859	62.8101	95.3767	84.9461	147.853	129.857	139.826	144.787	147.564	131.126	100.488	109.888	104.245	107.899	147.471	149.266	110.381	142.226	165.787	173.624	102.777	130.82	73.7623	76.4451
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020575Hsp90_N
IPR003594HATPase_C
IPR001404Hsp90_fam
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0051082unfolded protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0006950 response to stress
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
Blast
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BLAST of TCONS_00004120 vs. Swiss-Prot (Human)
Match: TRAP1 (Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens GN=TRAP1 PE=1 SV=3)

HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 346/626 (55.27%), Postives = 461/626 (73.64%), Query Frame = 3 
Query:  150 HEFQAETRQLLDIVARSLYSEKEVFIREIVSNSSDALEKLRQVQVT-GQQISDSDSPLEIHLTTDEEKGLFIIQDFGIGMSKDELINNLGTIARSGSKAFIEKAKHESIDAQNIIGQFGVGFYSTFMVGDKIDVFTKSYEPSASGYHWSSDGSGSYEIAEAEGVTRGTKVIIHLKSDDRRFSLKTTVEDIIRRYSNFVGFPIYLNGSRLNNIDALWTSSERDVSETDHSQFYQFISNTSDEPRYSLMYKADAPLNIRSVLYVPSNIPEMFGFGRMELG--VSLYSRKILIQSKAQKILPEWLRFIRGVVDSEDIPLNLSRELLQDSALIQKLSDVLVTKLLRYFLEQSRKDEEKFTKFMKECGNYFREGVVTDQSPSRREDIAKLLRFESSKERPGHLKSLMDYISGMKEDQKEIFFLSSPSRELAESSPYYEALKVKDVEVLFTYEENDEVVFAALKEFQKKNIISAENYLMSSDPLTDDVITDQ-PDIEKLSETETNELMDWIQNTLGKTKCQNIKESKRLASHPAMITVPDMGAARRWLKFVKSGPNTDLLKMKFEVLQPTFEINPNHEIVRSLNTLKGSNPMLAELLVNQLFDNALITAGLLDDPREMVGRLNTLLSKVMTR 2015
            HEFQAET++LLDIVARSLYSEKEVFIRE++SN+SDALEKLR   V+ GQ + +    +EIHL T+ EKG   IQD GIGM+++EL++NLGTIARSGSKAF++  ++++  +  IIGQFGVGFYS FMV D+++V+++S  P + GY W SDGSG +EIAEA GV  GTK+IIHLKSD + FS +  V D++ +YSNFV FP+YLNG R+N + A+W    +DV E  H +FY++++   D+PRY+L YK DAPLNIRS+ YVP   P MF   R ELG  V+LYSRK+LIQ+KA  ILP+WLRFIRGVVDSEDIPLNLSRELLQ+SALI+KL DVL  +L+++F++QS+KD EK+ KF ++ G + REG+VT      +EDIAKLLR+ESS    G L SL +Y S M+   + I++L +P+R LAE SPYYEA+K KD EVLF +E+ DE+    L+EF KK +IS E  ++  D   ++   D+ P  E LSE ET ELM W++N LG ++  N+K + RL +HPAM+TV +MGAAR +L+  +     +    + ++LQPT EINP H +++ LN L+ S P LA+LLV+Q+++NA+I AGL+DDPR MVGRLN LL K + R
Sbjct:   88 HEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPE----MEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNTLQAIWMMDPKDVREWQHEEFYRYVAQAHDKPRYTLHYKTDAPLNIRSIFYVPDMKPSMFDVSR-ELGSSVALYSRKVLIQTKATDILPKWLRFIRGVVDSEDIPLNLSRELLQESALIRKLRDVLQQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVTATEQEVKEDIAKLLRYESSALPSGQLTSLSEYASRMRAGTRNIYYLCAPNRHLAEHSPYYEAMKKKDTEVLFCFEQFDELTLLHLREFDKKKLISVETDIV-VDHYKEEKFEDRSPAAECLSEKETEELMAWMRNVLG-SRVTNVKVTLRLDTHPAMVTVLEMGAARHFLRMQQLAKTQE---ERAQLLQPTLEINPRHALIKKLNQLRASEPGLAQLLVDQIYENAMIAAGLVDDPRAMVGRLNELLVKALER 703
The following BLAST results are available for this feature:
BLAST of TCONS_00004120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAP10.000e+055.27Heat shock protein 75 kDa, mitochondrial OS=Homo s... [more]
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