TCONS_00004226 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004226
Unique Name	TCONS_00004226
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2179

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000041:217454..225801+
coding sequence from alignment at sc0000041:217454..225801+

transcript sequence

>TCONS_00004226 ID=TCONS_00004226|Name=TCONS_00004226|organism=Clytia hemisphaerica|type=transcript|length=2179bp
ATCATCTTCTTGTAGCATACAATATCGTTACCATACCTCTGATTCCTTTA
TTATGTAGTGGTTGACAAAAAGATTGGGTCCTAAGGAGGTCCTTAATTGA
TTTTCCTCAGTTACGAAATATGTATATAATGCCAAATCACTTCCATGAAA
aacgagttatttttttcagtcgTTGAAGCGTTGGATCACCAACCAAAGCC
ATATTTAATAAGAAGATCATTTTCATCGTCTTGAGCCTTGAAAGAATGAA
AGAGACTGCGATTCAAACAAGagaTTTTGTAGAGAAAGAAATGGATGCag
gaatcaaaagaaaaagtgaagatcATCCCaatgaagattttgaaaagCGA
GCAAAATATGCCTACTTGGGAAAGATTCCGAATGTGAATGATACAAACAC
TCCTTGTATTGTTTTTTCACTCCCAGAAGAAGTTGGTGTGTTAGCTGACG
CCCTTAAGATCTTCAAGAAACGTCAAATTAATTTGAAGCATATCGAGTCA
CGACCATCTAAATCTAACAAGAAGGATTATGAATTTTATGTGGATATCGA
TGCAGAGACTGCCAATTCCGAAAGTGTCAAACTTGTCGTAGAAGATTTGA
AGTCGAAAGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGTTCCATGG
TTTCCAAGAAAAATCGCTGACCTTGACAAATTTGCTGACAGAGTTTTGAG
TTATGGTTCAGAGCTTGATTCAGAACATCCTGGATTCACTGACCCAGTCT
ACCGAGCAAGACGAAAAGAATTTGCTGACATTGCCATCAAATACCGACAc
ggAGAGCCGTTACCACGTGTCACTTACACGGAAGACGAAATTAGCGTTTG
GAACACAGTTTTCTCTGAGTTGACGAAGCTATTCCCGAAATATGCGTGCA
GAGAAGTCAACTTCATGCTTCCTCTTCTTGTAGAAAACTGTAATTACAGA
ATCGGAGCTATTCCTCAATTAGAAGATGTTTCCAAGTTCTTAAAAGATTG
TACTGGTTTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACGTGACT
TCTTAGCTGGACTTGCTTTCCGCGTTTTTCATTCCACGCAATATATCCGA
CATGCAAAGACTCCTATGTATACTCCTGAACCAGATTGCGTCCACGAGTT
AATTGGACACGTTCCTTTGTTCGCTGACCCGAGTTTCGCGCAATTCTCTC
AGGAAATCGGATTGGCGTCACTTGGTGCTCCCGATGAATGGATCGAAAAA
CTGGCTACCTTGTATTGGTTCACAGTGGAGTTTGGATTATGCCGTCAAGA
TGGTGAAATCAAAGCTTATGGCGCAGGATTGCTCTCTTCCTTTGGCGAGC
TACAATATTGTGTGTCTGACAAACCGGAACATTTGGCTTTCGATCCGGAA
AAGACATCACAGACCAAATACCCGATTACGGAATTCCAACCGCGATATTT
CGTAGCGGAATCCTTTGAAGATGCCAAAGAGAAAGTTAGGAAATGGGCGA
ATCATATTCCCAAGCCATTCGCACTGCACTTCAACCCTTACACACAAATT
GTTGAGACGCTAGATCGTAAAGAACAGGTCCTTAAATTGATTGAAGACGT
GCGAGGAGAATTGGACCATGTATCGACAGCTCTCTCCAAGCAGCAATGAC
GAATCTTTTTAAAGTGACTAAATTGATGACCCGAATACGATTGATAAAAT
AACTCCCTAGAATAAGCTTAGATAAATAACTTGGACGTGTCTACTAGAAA
TCCGATGAAACCTCAAAAGGAACATAGCTGGAGCAGAGGAActttaaatt
tctttgaaagaatTTGTTGCTTGTGGCTTTCATTTGGATCGATATTTTCG
TGACTTTTTGTCATGAAGTCAACCGGAATGACGtttagaatttttgaatt
attatttttgaaagaagataaacatgaaatattttttctcaaatggtttt
ttttttttttttcatcattaatttcttgatctccaaaagtatattggttc
ttcttacaagaagttgaaatattttatgtatatgttatgtatATAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttatgtatatgttatg
tatataaatgtatataaaattctaCGATTCAAACTGATACGAAGTGGACA
GCTAAATCATTAATGGAAGCTTAGTGGGC

Run BLAST on NCBI

protein sequence of TCONS_00004226-protein

>TCONS_00004226-protein ID=TCONS_00004226-protein|Name=TCONS_00004226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MKETAIQTRDFVEKEMDAGIKRKSEDHPNEDFEKRAKYAYLGKIPNVNDT
NTPCIVFSLPEEVGVLADALKIFKKRQINLKHIESRPSKSNKKDYEFYVD
IDAETANSESVKLVVEDLKSKAKSVVLHNEESVPWFPRKIADLDKFADRV
LSYGSELDSEHPGFTDPVYRARRKEFADIAIKYRHGEPLPRVTYTEDEIS
VWNTVFSELTKLFPKYACREVNFMLPLLVENCNYRIGAIPQLEDVSKFLK
DCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHAKTPMYTPEPDCVH
ELIGHVPLFADPSFAQFSQEIGLASLGAPDEWIEKLATLYWFTVEFGLCR
QDGEIKAYGAGLLSSFGELQYCVSDKPEHLAFDPEKTSQTKYPITEFQPR
YFVAESFEDAKEKVRKWANHIPKPFALHFNPYTQIVETLDRKEQVLKLIE
DVRGELDHVSTALSKQQ

Run BLAST on NCBI

transcript from alignment at sc0000041:217454..225801+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004226 ID=TCONS_00004226|Name=TCONS_00004226|organism=Clytia hemisphaerica|type=transcript|length=8348bp|location=Sequence derived from alignment at sc0000041:217454..225801+ (Clytia hemisphaerica)
ATCATCTTCTTGTAGCATACAATATCGTTACCATACCTCTGATTCCTTTA
TTATGTAGTGGTTGACAAAAAGATTGGGTCCTAAGGAGGTCCTTAATTGA
TTTTCCTCAGTTACGAAATATGTATATAATGCCAAATCACTTCCATGAAA
aacgagttatttttttcagtcgTTGAAGCGTTGGATCACCAACCAAAGCC
ATATTTAATAAGAAGATCATTTTCATCGTCTTGAGCCTTGAAAGAATGAA
AGAGACTGCGATTCAAACAAGGTAAGGGTTATGCATTTAATTTCTTACAG
TGCAGTTTCTctttgattttcgaaaaagagaGTTGAAAATAAGTTCCTTC
TTATCCTTGGGTTGAAATAAGTCGGAATTTTCTATAGTGCAAACATTCAT
TGACCTCAAATCACGAAGAATTCCAAAGACTAATCTTTGGGTGAAACTTC
TCCTCGAGGCTCGATTTTTAAAACTCTTCTTCCACTGCGCCCGCCCGGGT
GGTTTGTGTTTGATCTCGCTTTTTTGGGCGGTGCGCCCTTAAAAAGAAGC
CGGTAAAAAACGGGGATACCCGGCTATTCTTAAACCCGGAAAATAAACAA
GGAAAGATCattttttgtcaacaaaattcttggaattctgtcacttttgt
tttctttttgtggTGCGAGAGCTttcgttttctatttttagactttcttt
tactttttttgaacAAAGTACTTATTATATAATTCTATAGCTATTTTCTT
GTGATTTGAATCTATATTTTCTCACTGAGATCATAACATATCAGGTCATA
AATAGTcataaatatgaaaaataagaGGGTGTTTTAGTGGGAGTGTGTTA
AAGTTATATTCGTTCTGTTCTGATTTTCCTCTTCTTGTATTGCTGTAGTT
GTTTATAGTCTCAATATTTTTCTCTATCATCTATGACATAGAACTAGAAT
GTATACTCTAAATTATATGTCTCTGTGTTTTcatcatcaaaattatttta
actcttttttttttgtaaaagctgtcATGTGATAGTAGAATATATCTGTT
AAAATACAACCCTGTCAAAAGCTTTGCTTTTTGTGAATGTTATCCATTCT
TGTGTTGATTAAAGTCAGGCAAAGGTTGTAGCAAGGCTTGTTGTGAAATG
TTTAGCTTGTTAATTTGGTTGGCATGAAGAGAACTTTTTTATCGCTATCT
TCTCcagtttcaaaagtttataaTTGTTGGGTATCCAGTtggaaattatt
ttcattttttgatgtgTTTCTTGGTCTGAATAGGTATTTGTATTCAGGCT
AGGAAACGTCAAAAATAAATATCCTTAGACCGCTTAGCTAGCTCGCAAAT
TTTAAGAGTGAAGACTTGTAATTTATTGAGCATTTTTAGTTTTATGTTAT
GAAATTGCAAATTCTCTCATAAGGTCAcatttaaaagaagaaatttctga
gtgaaagaaaatttgagggATTTGGCGGACTTATATTTATGAATGTATAA
CTGCAAAAATTTAAGTAATTTTTACCAAATTCCGGCTATTTTTTGCCtat
aaataagtttttttgcttTGTAATAACTTGTAATAAAGATTTTTGTCCGA
AATGTCCTGCAACAGccaaatcaaatttattcagGGTTATCCACCAAAAT
TGATTTCTTCTGTAAACAGAAAACTTTTCGGCTCTTATTAATAATATTTT
CTAATTTCTGTAAGAATAATAAAAAACATTATACGCTGTTGGATGGCATA
TTTTTTTTTGGCAATTggctttttaaaaagtttatcaCAGCAGGCCGAGT
ATATATATacatgagaaaaaaaagagaaaatttataTGCAAGTAGAGTAT
TTATTCTttacacctttttgaaaaatatcatgaattttcacaaaaagatt
CAAGAAAATCAATGTATATATGggagatgaaaaaaattttatgagcaaat
ttttgaaacttgtgtTTCTCTTCCAAACTATGCAGATAATCTAAATTGGC
CTACAGATACCTTATATTGATCTAGGCGGGAGAAACCTATAAATCATTTG
ACCCAATTGTTTCAAAAATCTGAgatatttcatttcaaaagtttggtttt
ttttaatgataGAACATAAAGAATATGTATATAACCTCCTtccttgaaat
ttcaaaatcaatttcaataTCATAGCTTTGGAAAGTACCAATATTCaagt
caaaaacttttctgGGTTTTCTGCTCCTGTGCAAGGTACAATATACTTGG
ATCttcaaaaaattagatttttttcaaatgaccTATGATGAAAAGTGTGA
TATTCAAAAAGactaaaatgaatttttgttgGAGTGTCTAATTTGCCGGT
TTGGTTGTCATTTTTAATTAATATCTCCTTTTGCTAATCAATTCATTCCA
AATGAAACAAAATTCTGTCTAAAATAGATAATTTTACCTCAGAGCATGAA
AGTGACAAAAGTTAGAATGCTTATTATTCATGATCACTTTTTAGATTAGA
TTGATATAAATGACTATTTAAATCATTTACTAGCTTTTTATGCTTGCGGA
CTTTCTGCTTTATAACATTATAACAATGTCAATTCAATCAATGGTGTATT
CTTTCAATGGGGATTCAGGAAAATTCTGCTATTTATATGATCATATCAGA
TCATCGAGAGTTATTTTGCTAAATGGTTTGAAAGCATAATTTAAACCatg
ttgaaaatatttatttaattgCAGTGTTAATAAGATAAGGGCAGCAGGTC
ATTAACAGCGATGTTATGCCGTTATTAATATTACTGTCGACATGCTTAGA
TGTATCTCATTGCTATCTtgtcagtttgaaaaaaagtggattatataata
taatattttttctaatttttacaactttttgatttttaagagaTTTTGTA
GAGAAAGAAATGGATGCaggaatcaaaagaaaaagtgaagatcATCCCaa
tgaagattttgaaaagCGAGCAAAATATGCCTACTTGGTGAGTCACCTTG
AAAGTTTTGGAATTCTCATATTTTAATCATTATTTATCTTATCAATGTTT
ATCTTAAGAAATACCTGTATAGCTCTTcctaaaatatattttgtttacat
ttctaCATCTTTACATTTTCAGGGAAAGATTCCGAATGTGAATGATACAA
ACACTCCTTGTATTGTTTTTTCACTCCCAGAAGAAGTTGGTGTGTTAGCT
GACGCCCTTAAGATCTTCAAGGTAAAAACTCGTcccttattttttgttat
tgcCTATCTATGCTACTTTTTAATACTGTTTCTTCATAGTAATTATAATT
CATATCTTATCAGGATAAATGTGTCTtgtatataatttcaaaaacacTAC
TTTTTCTTAGAAACGTCAAATTAATTTGAAGCATATCGAGTCACGACCAT
CTAAATCTAACAAGAAGGATTATGAATTTTATGTGGATATCGATGCAGAG
ACTGCCAATTCCGAAAGTGTCAAACTTGTCGTAGAAGATTTGAAGTCGAA
AGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGGTAGGTCGAAAATAA
GTTTGCAACATTATCATCTTAAAAAACCTACTGTACCAAGCTTCATAAGT
AATTAAAGCCAAAATCATTCTACtaaaaaacagatttttcacTCCTAAGT
TTAATAGAAATAGTATTATTTCAATAAAGCAACATTCTAATGTTGTGAAT
CAGATACGACGTATTGCGCATGGCAGATACGTCGGGGCcgtatcagattt
aaaaaggcTTCCGTCGCTCCTGTTTATTAAATACTACACTAATCTATTTT
GTACTTTGATGTATTACGTATTCAAGTCCACGGGATTTGTTTTACACACA
CTTACTATATATCGTTTAACATTGATTTGTTATTGAGCTAGCGACATTCT
TTCTTTTAGAAACTTGTACTATTTTTTTGCTAACTCAAATTTTTTCGCAA
TGTTTTTATGTACTTATATACGACTTGACGTAAATATTGCTGGAAGCTTT
TAAGTCTATCAATTCGGCTTCGAAACTTGTTTTTCTGAAAGCACATTCAA
GTAACATTCCATTTTCAATGCAAGTTGAGACATTAACCAAAAACAACTAA
CTTTGAAACTTCTCTTTGATTTCGTTTAGTTCCATGGTTTCCAAGAAAAA
TCGCTGACCTTGACAAATTTGCTGACAGAGTTTTGAGTTATGGTTCAGAG
CTTGATTCAGAACATCCTGTAAGTGACGTTTAGAAAATTTGTTTCAACTT
GAGGAACaatgaaaaattggccaaaatatcgtcctcagtggaaaattata
cttcaatttttgtccctgCTGAAAACAATCAGATAAGcgaatcctcactg
caaaatacttTGCTATTTtatccatccccactgaattttatggctcgaag
acaatggaattcaaatccccagccctTAAAAACGTGGGAATATTAATCct
catcgagttttggtccgttatttttacctccACTGGCTGTAAAAATCCTA
CGGGGTTtgcgagaagggggtgtagtGAGGTACTGAACTCGATAATGGTT
TAATAATCACTTAAACATTTCACTGTCTCATATTTTAGGGATTCACTGAC
CCAGTCTACCGAGCAAGACGAAAAGAATTTGCTGACATTGCCATCAAATA
CCGACAGTACGTCTTATGTTGATGTTAAGGCTAATAAGAATTTCACGTGC
TGTTATAGGTTTCATCCTTACTAAATTATCACGCACTGTGTTGCATAACA
TTTTACTTTCGATTATCAAATACATGTGGTTATTTTACTTCCATATCTGT
ATCATACGGCAGCTTAACCTCAATTAAAATCGATGaaaagataattattt
tttattttagcggAGAGCCGTTACCACGTGTCACTTACACGGAAGACGAA
ATTAGCGTTTGGTAAGTTTCCCATGTCTCTTAGTGACGTAAACTCTTATA
TTAATAAAGTGATTATCCTTCTCGTAAATCATAGCAAGTACTTTTCATCA
CGCAACTATTATCTCAATGAATTATCGGAATAATGAATATTGAATCACAT
TTTTTCTCGTATTTATAGGAACACAGTTTTCTCTGAGTTGACGAAGCTAT
TCCCGAAATATGCGTGCAGAGAAGTCAACTTCATGCTTCCTCTTCTTGTA
GAAAACTGTAATTACAGGTACGTCTCATTGAAGAAGCACTTTTGTATAAG
TTTACAGTGACTTCTCAAAAAATATTGccaatgaaaaaattgaaatgaac
cGCCTCTCCAActaaaggaaaaataaaagacgTCATCATCAGATATAAAA
GACCCTTCAGTCTATCCcaacagaccagaaaatattcaTTAGATCAATGA
GATAGGGATGTACATAATATTGAACAAACTTAACGGTGCGTGTTTTGTCA
AGGATATcttcatcatttttcattctaCTGACGCTTATTAATTTCAGAAT
CGGAGCTATTCCTCAATTAGAAGATGTTTCCAAGTTCTTAAAAGGTCAGT
TTCAAAATCCGTTTTCTCGATAAACTATTTCTTACGTCATTAATGAACTC
ATTTGACGTTTGTTGTTTTAGCAACACATCTAATTCTTGATCACCGTAAA
ACTATACATCAATTTTCACCATTTGATAATTTGCGCTTATCTTTTCCACA
GATTGTACTGGTTTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACG
TGACTTCTTAGCTGGANTCTTACGTCATTAATGAACTCATTTGACGTTTG
TTGTTTTAGCAACACATCTAATTCTTGATCACCGTAAAACTATACATCAA
TTTTCACCATTTGATAATTTGCGCTTATCTTTTCCACAGATTGTACTGGT
TTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACGTGACTTCTTAGC
TGGACTTGCTTTCCGCGTTTTTCATTCCACGCAATATATCCGACATGCAA
AGACTCCTATGTATACTCCTGAACCGTAAGTggaaagtaataattatgac
gtatgcgtttCGGAGCGCTATTACATGTACGTTTCAAGTAATTCAATACA
GTAATTTCGCGATTTAGCGACTACCACTCCGGTAGTGTAGTATTGCATGT
GATCGAAAAAGATTTCATCTTTTACTTACTTTGATTTTCAGAGATTGCGT
CCACGAGTTAATTGGACACGTTCCTTTGTTCGCTGACCCGAGTTTCGCGC
AATTCTCTCAGGTAAACAATGTCCCACctcgaaaattcaaaatattgtcT
TCTTTTCGATCTTGCTATAACAAAGAGATTTTATCCACCAACTTACCCCA
GACTTCTTGTTTAATGGgtcttttgatttgattctttttagGAAATCGGA
TTGGCGTCACTTGGTGCTCCCGATGAATGGATCGAAAAACTGGCTACCGT
AAGTTTTCCTTTTTGTTCAAcagttttattgttttttttttgttgttgtt
acaACTGATAATATGGACGGAAAAACTCTACACCTGTTGATTCCCTTAGG
CAGCAAACCTCGACGCGaactttctttattttgatagcTATTTATTTTAT
GCTTTATTATACGCTACCATGCTGTCAATTTTGTCATCTAAAAGAATTGG
TCAATACACCAAactttttataaagttttcacTATACATTTCTTCAGTAG
AAATTTCGCGTTTCCCTTTTTAGTTGTATTGGTTCACAGTGGAGTTTGGA
TTATGCCGTCAAGATGGTGAAATCAAAGCTTATGGCGCAGGATTGCTCTC
TTCCTTTGGCGAGCTACAAGTAAGTGAAAGAATACTTATATACCAGTAAA
CTTTAATCAGTTATCGGTTATACATTACTCCCGTTTTATTATacaccctt
tctcacagacccggtaggaatttttcagccagtgggaataaaaataacgg
actgaaactcgatggggattgatattcccaagtTTTTTATAGCTAGGGAT
TGATATTACACTGTTTTTTTTGTCAGAAATTTCAGTGATGATGGAAAAAT
AATATATtaatttgcagtgaggattggtttatttgattattttcagtggg
gacaaaaattggaggataattttccactggggacgatattatGGCCAAAT
TtccaagtgggtctgtgagaagggggtgttataaTTTGTTAGGAAGGGCT
TTGTTCGACATTCGATCCATTAACAAATCCTGATAAAGTGATTAAGTTTG
ACATGAATTGAAGCGGTAGTGTTTTCTTTTGGCGTCTTTTTGTTGAcggt
tatttttcacatttattcACAGTATTGTGTGTCTGACAAACCGGAACATT
TGGCTTTCGATCCGGAAAAGACATCACAGACCAAATACCCGATTACGGAA
TTCCAACCGCGATATTTCGTAGCGGAATCCTTTGAAGATGCCAAAGAGAA
AGTTAGGTAAGGATTCTAATTTAATTTTCATGTTCTTCTGTTTTTTGAAA
CActctgaaaagtttttttttttacatttgaatTTTAACACTGCAGACGT
GTAAGCTTTCTGACTTGATGATGTGTAACGGCTGACCGACTCAATGATTG
TTTGCGCAGagagaaaatgagcaaaaatctTTGGTTATGAAAGTTGGCAA
ACCTTGCTATTTATCATCCATCAGACAGTCGTATTGATGGGGGGCACGTT
TGTTTTAGGAAATGGGCGAATCATATTCCCAAGCCATTCGCACTGCACTT
CAACCCTTACACACAAATTGTTGAGACGCTAGATCGTAAAGAACAGGTCC
TTAAATTGATTGAAGACGTGCGAGGAGAATTGGACCATGTATCGACAGCT
CTCTCCAAGCAGCAATGACGAATCTTTTTAAAGTGACTAAATTGATGACC
CGAATACGATTGATAAAATAACTCCCTAGAATAAGCTTAGATAAATAACT
TGGACGTGTCTACTAGAAATCCGATGAAACCTCAAAAGGAACATAGCTGG
AGCAGAGGAActttaaatttctttgaaagaatTTGTTGCTTGTGGCTTTC
ATTTGGATCGATATTTTCGTGACTTTTTGTCATGAAGTCAACCGGAATGA
CGtttagaatttttgaattattatttttgaaagaagataaacatgaaata
ttttttctcaaatggttttttttttttttttcatcattaatttcttgatc
tccaaaagtatattggttcttcttacaagaagttgaaatattttatgtat
atgttatgtatATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtttatgtatatgttatgtatataaatgtatataaaattctaCGATTCA
AACTGATACGAAGTGGACAGCTAAATCATTAATGGAAGCTTAGTGGGC

Coding sequence (CDS) from alignment at sc0000041:217454..225801+

>TCONS_00004226 ID=TCONS_00004226|Name=TCONS_00004226|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000041:217454..225801+ (Clytia hemisphaerica)
ATGAAAGAGACTGCGATTCAAACAAGagaTTTTGTAGAGAAAGAAATGGA
TGCaggaatcaaaagaaaaagtgaagatcATCCCaatgaagattttgaaa
agCGAGCAAAATATGCCTACTTGGGAAAGATTCCGAATGTGAATGATACA
AACACTCCTTGTATTGTTTTTTCACTCCCAGAAGAAGTTGGTGTGTTAGC
TGACGCCCTTAAGATCTTCAAGAAACGTCAAATTAATTTGAAGCATATCG
AGTCACGACCATCTAAATCTAACAAGAAGGATTATGAATTTTATGTGGAT
ATCGATGCAGAGACTGCCAATTCCGAAAGTGTCAAACTTGTCGTAGAAGA
TTTGAAGTCGAAAGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGTTC
CATGGTTTCCAAGAAAAATCGCTGACCTTGACAAATTTGCTGACAGAGTT
TTGAGTTATGGTTCAGAGCTTGATTCAGAACATCCTGGATTCACTGACCC
AGTCTACCGAGCAAGACGAAAAGAATTTGCTGACATTGCCATCAAATACC
GACAcggAGAGCCGTTACCACGTGTCACTTACACGGAAGACGAAATTAGC
GTTTGGAACACAGTTTTCTCTGAGTTGACGAAGCTATTCCCGAAATATGC
GTGCAGAGAAGTCAACTTCATGCTTCCTCTTCTTGTAGAAAACTGTAATT
ACAGAATCGGAGCTATTCCTCAATTAGAAGATGTTTCCAAGTTCTTAAAA
GATTGTACTGGTTTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACG
TGACTTCTTAGCTGGACTTGCTTTCCGCGTTTTTCATTCCACGCAATATA
TCCGACATGCAAAGACTCCTATGTATACTCCTGAACCAGATTGCGTCCAC
GAGTTAATTGGACACGTTCCTTTGTTCGCTGACCCGAGTTTCGCGCAATT
CTCTCAGGAAATCGGATTGGCGTCACTTGGTGCTCCCGATGAATGGATCG
AAAAACTGGCTACCTTGTATTGGTTCACAGTGGAGTTTGGATTATGCCGT
CAAGATGGTGAAATCAAAGCTTATGGCGCAGGATTGCTCTCTTCCTTTGG
CGAGCTACAATATTGTGTGTCTGACAAACCGGAACATTTGGCTTTCGATC
CGGAAAAGACATCACAGACCAAATACCCGATTACGGAATTCCAACCGCGA
TATTTCGTAGCGGAATCCTTTGAAGATGCCAAAGAGAAAGTTAGGAAATG
GGCGAATCATATTCCCAAGCCATTCGCACTGCACTTCAACCCTTACACAC
AAATTGTTGAGACGCTAGATCGTAAAGAACAGGTCCTTAAATTGATTGAA
GACGTGCGAGGAGAATTGGACCATGTATCGACAGCTCTCTCCAAGCAGCA
ATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002353	XLOC_002353	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004226-protein	TCONS_00004226-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000041	supercontig	sc0000041:217454..225801 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.2206	0.572854	0	0.422955	0	4.71512e-09	0.00964209	0.000388942	0.243189	0.987627	0.00186918	0.0591407	0.00505613	3.55911e-06	10.855	0.230896	0.123542	1.35114	0	0	0.00313192	1.90146	0.033162	0.00366976	0.74005	0.104331	37.9531	62.5083	0.330681	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019774	Aromatic-AA_hydroxylase_C
IPR002912	ACT_dom
IPR001273	ArAA_hydroxylase
IPR019773	Tyrosine_3-monooxygenase-like
IPR018301	ArAA_hydroxylase_Fe/CU_BS

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0009072	aromatic amino acid family metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016714	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen
GO:0005506	iron ion binding
GO:0004497	monooxygenase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009072	aromatic amino acid family metabolic process
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016714	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen

Blast

[Close]

BLAST of TCONS_00004226 vs. Swiss-Prot (Human)
Match: PH4H (Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH PE=1 SV=1)

HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 249/423 (58.87%), Postives = 316/423 (74.70%), Query Frame = 3

Query:  381 NVNDTNTPCIVFSLPEEVGVLADALKIFKKRQINLKHIESRPSKSNKKDYEFYVDIDAET--ANSESVKLVVEDLKSKAKSVVL-HNEESVPWFPRKIADLDKFADRVLSYGSELDSEHPGFTDPVYRARRKEFADIAIKYRHGEPLPRVTYTEDEISVWNTVFSELTKLFPKYACREVNFMLPLLVENCNYRIGAIPQLEDVSKFLKDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHAKTPMYTPEPDCVHELIGHVPLFADPSFAQFSQEIGLASLGAPDEWIEKLATLYWFTVEFGLCRQDGEIKAYGAGLLSSFGELQYCVSDKPEHLAFDPEKTSQTKYPITEFQPRYFVAESFEDAKEKVRKWANHIPKPFALHFNPYTQIVETLDRKEQVLKLIEDVRGELDHVSTALSK 1640
            N N      ++FSL EEVG LA  L++F++  +NL HIESRPS+  K +YEF+  +D  +  A +  +K++  D+ +    +     +++VPWFPR I +LD+FA+++LSYG+ELD++HPGF DPVYRARRK+FADIA  YRHG+P+PRV Y E+E   W TVF  L  L+  +AC E N + PLL + C +    IPQLEDVS+FL+ CTGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH   PMYTPEPD  HEL+GHVPLF+D SFAQFSQEIGLASLGAPDE+IEKLAT+YWFTVEFGLC+Q   IKAYGAGLLSSFGELQYC+S+KP+ L  + EKT+   Y +TEFQP Y+VAESF DAKEKVR +A  IP+PF++ ++PYTQ +E LD  +Q+  L + +  E+  + +AL K
Sbjct:   28 NCNQNGAISLIFSLKEEVGALAKVLRLFEENDVNLTHIESRPSRLKKDEYEFFTHLDKRSLPALTNIIKILRHDIGATVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGILCSALQK 450

The following BLAST results are available for this feature:

BLAST of TCONS_00004226 vs. Swiss-Prot (Human)

BLAST of TCONS_00004226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PH4H	0.000e+0	58.87	Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH...	[more]

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TCONS_00004226 (transcript) - C. hemisphaerica